TCONS_00055982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055982
Unique NameTCONS_00055982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055982 ID=TCONS_00055982|Name=TCONS_00055982|organism=Clytia hemisphaerica|type=transcript|length=2107bp
GTTTCAggagaaaaaaacacaaaataaaaatagaaaaaaaacacataggA
TGGAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAA
CTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACC
TGATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTG
TACCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGAT
GGGATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTATG
TGCTGGTTTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCATCAAAT
TAAgtgcacccttattgaaactTCGTCCGCGAAAAGACTTGGTAGAAACA
CTCCTTCATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATAACAA
GgATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGAATCA
ATAAAGAGACTGGGACCAACATTTCAgtttatcattcttttcacgACGAG
gtGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAA
ACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCT
CTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCT
TTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTaagaaaag
taaaaagttaGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAA
GCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGAT
TCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGA
TTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTT
ACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAaactaactctaac
cctaagaCAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTAA
ATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAA
CTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTAT
CGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTC
TGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAG
GCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGT
GgacgagaaaattttttgaaacgatTAGAAAATAACATGAAAGGGAATAC
TCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTT
CAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAA
AATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAA
CCAACCCTCGTTCTCAAGAAATCCTacaacaaaccaaaacaagTCTCCCT
ATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACTAAA
CGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAA
AAAGActaaattttcgaaagaaacGCACATGGTTATTTCTTCAGACGAAG
AGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCT
ATGAGAGTTCCtgaacatcttttgaatgaacacttGGATGAATGCTTAAC
TTCTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCAA
TTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTCG
GACCCTCATTCTTtcgtttcaatgtttttttttagtttttttagtcattt
ttaccAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTAT
GACTCGTtatattttgtttcattttttactGTGAATTtagaaaactgaaa
atatttattttttatcccAAAATTATATCAACGATTTCATGAATCATAGA
GCCTCGC
Run BLAST on NCBI

protein sequence of TCONS_00055982-protein

>TCONS_00055982-protein ID=TCONS_00055982-protein|Name=TCONS_00055982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
FQEKKTQNKNRKKTHRMENEDEDFALALKLFTELNEGEGEQSQSVKGGKP
DEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLC
AGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNK
DHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVK
RPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKIKEPEKPVKQSKKS
KKLEETGQKLGSSSSESNKNNKNAITNWFQKTDSSKLSTSSNSSNSISID
CEEDLKPPINPWADDSYTSNSKNSKPTSKTNSNPKTKNNTSNHGNQNKGK
YPAGSTAVKGGGSRTSTITSKGKNPPTNENDIYRSSSTGASSNIYGFKMS
ANNKEDSAKQPLASFSGNGKRISSTNDEPSGNSGRENFLKRLENNMKGNT
QRKPSTNSSQISIPPSSNTFRKPKDSDFSMKNQNKDRTQKKETTEKTPPN
QPSFSRNPTTNQNKSPYTNKQPHNAQSNLTNTKRNLSSSSSQNSSSTSPK
KTKFSKETHMVISSDEEDNVQQQQNLVDCPACPMRVPEHLLNEHLDECLT
S
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..122331-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055982 ID=TCONS_00055982|Name=TCONS_00055982|organism=Clytia hemisphaerica|type=transcript|length=5310bp|location=Sequence derived from alignment at scaffold_266:117022..122331- (Clytia hemisphaerica)
GTTTCAGGAGAAAAAAACACAAAATAAAAATAGAAAAAAAACACATAGGA
TGGAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAA
CTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACC
TGATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTG
TACCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGAT
GGGATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTA
ANCAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACC
AAATGTTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGA
TGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAGAT
TTGATCAATCTTCCCTTGCTCATTTCTTTTTTTCCCAGATCATTTTTAAT
AAGTATAACGGAAAAAACTTTTTATGTGACTGCCACAATGTTTGATTAAA
ATTAACAGAGTGGATAGTGTATTTTACGGTGTGCAAACCTATGACATTCT
AAGATTTTGAATAATGTCCAACTGATACCGACACAAGGATCTATTTTATC
CAAATATGTCGACACGGGACTTGAAATGTTAAGCGAAAATAAAGTTACAT
TTACTTTCATTTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTT
TGAAGCTAATTCCCTTCCTTTGTCTGNGTTTACTTTCATTTGTTGTCTGG
AAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCACTTCCTTT
GTCTGAAGGTTTCTTCTGACAAAAAGCTCAGTCCTTCTTGAATTTGAGAG
TTTTCAACAAAGATAACAAGACCTACATTATCTAAACAAATGAATGTGCT
TCTACTTATGGCCAGGTTATGAACAGTACCTCATTTGTCATTCCGTAAAA
GTTCGTTGACTTATCGGACGTGTTTAAACGAAAAGCAGTAGGTCAGGTGA
CCTACTTAATCTGTTCGGTTTGACGATCCAAATAATCATTATCCTCTACA
GAGTATCGCTTTTTTGATGTGGAAACTTTTGAGGTTTTTTGGAAATTGAC
GTTTGTCTGGTCGTGGTTTGACCTGGCATCTGGGGAAGCTCTATCTGGGT
GTAATGAAGGTTTCAAAATGTGAAATCAATATATGTTTTTAGTGGTTTTC
GCACATGTTACTCCCATCTTGCTGACTATACTAATATATTAGTTTTATTA
TGTGACTGGAATTTCGCACATGCTTCTTCTATTCTATATTGCTGACTACA
ATTTATGTATATATGGCTACAATAATTTTCAAATTACGAAATCATACAGC
TTGGATATCATTACTCTCTTAAAGATTTGGCCATTAGAAAATATCTTCTC
AGTTATTCATCAGAAAAATGCTTCATCCCTCTTTCCTTAGATGTGCTGGT
TTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCANATTTACTTTCAT
TTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAAT
TCCCTTCCTTTGTCTGAAAGTTTCTTTTGACAAAAAGCTCAGTCCTTTTT
GAATTTGAGAGTTTCCGACAAAGATAATAAGACCAACATGATCTAAACAA
ATAAATGTGCTTCTGTTTATAGCCAGGTTATGAACAGTACCTCATTTGTC
ATTCCGTAAAAGTTCGTTGACTTATCAGACGTGTTTAAAGTGGGGGCGTA
CGGTTTTTCGGAATTGCGGAAATCGACCCTTTTTTCTTCGGTATTTCGGA
ATTCTAAAATTGTTTCGGAATGGAAAATCCATAATTTTTTGCTTCGAAAT
TTCGGTATTATAAAGTTTTTATCCCCTTTTTTCGGAATTCATACACGAAA
AATCAAATTTGATGAAAAATTAGTCAAAACGAAGAAAAATACCCAAAAAA
AATCGGTATCGGAATTGCAAGTACTCTTTTACGGAATTCCGGAAACTTTG
GCAAAGTTATTCGGTATTTCGGCAATCGCAAAACCCGTACGCCCCCCCCT
TTAAACGAAAAGCAGTAGGTCAGGTGACCTACTTTATTTGTTCATAAATT
CGATTGTTGACGATCCAAATAATCATTATCCTCTACAGAGTATCGCTTTT
TGATGTGGAAACTTTTGAGGTTTTTTGGAATGCGATGTTTGTCTGGTCGT
GGTTTGACCTGCCATCTGGGGAAGCTCTATTTGGGTGTAATGAAGGTTTC
AAAATGTGAAACCAATATGTTTTTAGTGGTTTTCGCACATGTTACTCCCA
TCTTGCTGACTATACTAATATATTTGTTTTATTATGTGACTGGAATTTCG
CACATGCTTCTTCTATTCTATATTGCTGGCTACAATTTATGTATATATGG
CTACAATAATTTTCAAATTACGAAATCATACAGCTTGGATATTATTACTC
TCTTAAAGATTTGGCCATTAGAAAATATTTTCTCAGTTATTCATCAGAAA
AATGCTTCATCCCTCTTTCCTTAGATGTGCTGGTTTGTGCTACTATGAGC
GGCGTGGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTT
CGTCCGCGAAAAGACTTGGTAGAAACACTCCTTGNATCAAATTAAGTGCA
CCCTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTGT
AAGAATACTCTCCTTGTACAATTCTTCCTCTGTCGGGATTACTATTCACG
GCCATGTCTGTCTCTGAAAACTTATTAAGTGAACGTAGTTAAAACTAAAT
TGAAATTGAATTTAATTGAAACCTTTGTTATTAAATTCATTTTCGAAAAG
CTGGTAAAATTGTTTTTTACTTTTCAGCATGAAATGATTCACGCTTTACT
GTTTGTCACAGATAATAACAAGGTACTGTTCTGTTCTTGTTTATTCGTAT
TTCCGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATAGCACTTTCTGTT
GGTTTCTTTAAAGAAGGTAACACAAATTGGTTTTCCGTTGGTTAATGTTC
TAATAAAAACTGTCGTGTCCATTTTCGAAACCTTGCTATCGATTTCGCCC
TCGTTAGTTGAATCATAACATGGATCTACATTATGAACAAAATGTCACGC
CTATCCCGACCTTATTTCCGTAGATATGAGATGCAGACCATTCTACACTT
TTTCACTTTTCTTTTGTAGGATCACGATGGACATGGACCAGAATTTCACA
AACACATGTACCGAATCAATAAAGAGACTGGGACCAACATTTCAGTATGA
ATCTTTTCATTATGTTGTGTCGACCATCAAAATTTATGCCAATATTTCAG
AGATTTTCCATTTTCACGCGCTTTGAAAATTCCTACAGTGTCTTCTTTCG
TGATTTAACCAACAATTAGCTTGTGCGGATGCAAAATTGAGTCCAAATTG
ATATGACAATCTAAAATATTTGACTTTGATTTCATTTTATCCACTTTTTA
GGTTTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTTTACTATT
TGATCTGGATGTCCNTTATCATTCTTTTCACGACGAGGTAAGCAAGATAT
TTGTTTACTATTTGATCTGGATGTCATTCGCCCATTAAAACCTATTGCAT
GAACTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAAATTTATTTTCTTT
TAGGTGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGT
TAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGC
CCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGA
GCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAA
AAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTG
AAAGCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACA
GATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCAT
AGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATA
GTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAACTCT
AACCCTAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGG
TAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTT
CAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATT
TATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAAT
GTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTT
CAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAAC
AGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGGGAA
TACTCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCT
CTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAAC
CAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCC
GAACCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGTCTC
CCTATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACT
AAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACC
GAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAGACG
AAGAGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGT
CCTATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATGCTT
AACTTCTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCG
CAATTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTT
TCGGACCCTCATTCTTTCGTTTCAATGTTTTTTTTTAGTTTTTTTAGTCA
TTTTTACCAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAG
TATGACTCGTTATATTTTGTTTCATTTTTTACTGTGAATTTAGAAAACTG
AAAATATTTATTTTTTATCCCAAAATTATATCAACGATTTCATGAATCAT
AGAGCCTCGC

Coding sequence (CDS) from alignment at scaffold_266:117022..122331-

>TCONS_00055982 ID=TCONS_00055982|Name=TCONS_00055982|organism=Clytia hemisphaerica|type=CDS|length=10836bp|location=Sequence derived from alignment at scaffold_266:117022..122331- (Clytia hemisphaerica)
GTGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAA
ACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCT
CTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCT
TTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAAAAG
TAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAA
GCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGAT
TCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGA
TTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTT
ACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAACTCTAAC
CCTAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTAA
ATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAA
CTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTAT
CGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTC
TGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAG
GCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGT
GGACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGGGAATAC
TCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTT
CAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAA
AATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAA
CCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGTCTCCCT
ATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACTAAA
CGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAA
AAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAGACGAAG
AGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCT
ATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATGCTTAAC
TTCTTGAGTTTATCATTCTTTTCACGACGAGGATCACGATGGACATGGAC
CAGAATTTCACAAACACATGTACCGAATCAATAAAGAGACTGGGACCAAC
ATTTCACATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATAACAA
GATGTGCTGGTTTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCATC
AAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGA
AACACTCCTTTTTCAGGAGAAAAAAACACAAAATAAAAATAGAAAAAAAA
CACATAGGATGGAGAATGAAGATGAAGACTTTGCATTGGCTTTGAAACTG
TTCACTGAACTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGTAAAAGG
AGGTAAACCTGATGAAAAACTCTCCATCGTTGATCCAAGTTGGGAGTTAA
TCGATCCTGTACCAAATATTCATGAACTTTTCGTCCAATTCAACGCAGCT
TATTTTGATGGGATGCTGGCTAGTGTATCCGTACAATGGAGCCCAAGGAT
GACCTTGTGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTG
TGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAG
CGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGA
GGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAA
GAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTT
CTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAA
ACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAG
CATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACG
ATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAAC
TCTAACCCTAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAA
AGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAA
CTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGAC
ATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAA
AATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCT
TTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGA
AACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGG
GAATACTCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTC
CCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAA
AACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCC
TCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGT
CTCCCTATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAAC
ACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTC
ACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAG
ACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCG
TGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATG
CTTAACTTCTTGAGTTTATCATTCTTTTCACGACGAGGATCACGATGGAC
ATGGACCAGAATTTCACAAACACATGTACCGAATCAATAAAGAGACTGGG
ACCAACATTTCACATGAAATGATTCACGCTTTACTGTTTGTCACAGATAA
TAACAAGATGTGCTGGTTTGTGCTACTATGAGCGGCGTGGCAAGTGTTGC
TCCATCAAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAAAGACTT
GGTAGAAACACTCCTTTTTCAGGAGAAAAAAACACAAAATAAAAATAGAA
AAAAAACACATAGGATGGAGAATGAAGATGAAGACTTTGCATTGGCTTTG
AAACTGTTCACTGAACTAAATGAGGGCGAAGGAGAGCAATCACAGTCCGT
AAAAGGAGGTAAACCTGATGAAAAACTCTCCATCGTTGATCCAAGTTGGG
AGTTAATCGATCCTGTACCAAATATTCATGAACTTTTCGTCCAATTCAAC
GCAGCTTATTTTGATGGGATGCTGGCTAGTGTATCCGTACAATGGAGCCC
AAGGATGACCTTGTGGATCACCATAGACAACATTGGTGGCGTTGTGATGG
TCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGA
ATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAA
TGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCA
ATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCT
CAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAACTGGTTT
CAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTC
CATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGG
CAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAA
ACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAACCATGGAAACCA
AAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGT
CGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAG
AATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGG
CTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAG
CCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGACGAACCT
TCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAATAACAT
GAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTA
TCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCA
ATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAA
AACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAA
ACAAGTCTCCCTATACTAACAAACAACCACATAACGCACAATCAAATTTA
ACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATC
AACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTT
CTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTGGATTGC
CCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGA
TGAATGCTTAACTTCTTGAGTTTATCATTCTTTTCACGACGAGGATCACG
ATGGACATGGACCAGAATTTCACAAACACATGTACCGAATCAATAAAGAG
ACTGGGACCAACATTTCACATGAAATGATTCACGCTTTACTGTTTGTCAC
AGATAATAACAAGATGTGCTGGTTTGTGCTACTATGAGCGGCGTGGCAAG
TGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTTCGTCCGCGAAA
AGACTTGGTAGAAACACTCCTTTTTCAGGAGAAAAAAACACAAAATAAAA
ATAGAAAAAAAACACATAGGATGGAGAATGAAGATGAAGACTTTGCATTG
GCTTTGAAACTGTTCACTGAACTAAATGAGGGCGAAGGAGAGCAATCACA
GTCCGTAAAAGGAGGTAAACCTGATGAAAAACTCTCCATCGTTGATCCAA
GTTGGGAGTTAATCGATCCTGTACCAAATATTCATGAACTTTTCGTCCAA
TTCAACGCAGCTTATTTTGATGGGATGCTGGCTAGTGTATCCGTACAATG
GAGCCCAAGGATGACCTTGTGGATCACCATAGACAACATTGGTGGCGTTG
TGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCAGGCGTG
CTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGACCACAAA
CAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAAACCGGT
GAAGCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAAAGCTTG
GTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATCACAAAC
TGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAATTCATC
TAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGATAAACC
CGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAACCAACA
AGCAAAACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAACCATGG
AAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTAAAGGAG
GTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCTCCGACC
AATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAGTAATAT
CTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAAAGCAAC
CCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACAAATGAC
GAACCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATTAGAAAA
TAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCATCACAAA
TTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGATTCTGAT
TTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGAAACCAC
TGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTACAACAA
ACCAAAACAAGTCTCCCTATACTAACAAACAACCACATAACGCACAATCA
AATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACAAAACTC
TTCATCAACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGCACATGG
TTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAATCTTGTG
GATTGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAATGAACA
CTTGGATGAATGCTTAACTTCTTGAGTTTATCATTCTTTTCACGACGAGG
ATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGAATCAAT
AAAGAGACTGGGACCAACATTTCACATGAAATGATTCACGCTTTACTGTT
TGTCACAGATAATAACAAGATGTGCTGGTTTGTGCTACTATGAGCGGCGT
GGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTTCGTCC
GCGAAAAGACTTGGTAGAAACACTCCTTTTTCAGGAGAAAAAAACACAAA
ATAAAAATAGAAAAAAAACACATAGGATGGAGAATGAAGATGAAGACTTT
GCATTGGCTTTGAAACTGTTCACTGAACTAAATGAGGGCGAAGGAGAGCA
ATCACAGTCCGTAAAAGGAGGTAAACCTGATGAAAAACTCTCCATCGTTG
ATCCAAGTTGGGAGTTAATCGATCCTGTACCAAATATTCATGAACTTTTC
GTCCAATTCAACGCAGCTTATTTTGATGGGATGCTGGCTAGTGTATCCGT
ACAATGGAGCCCAAGGATGACCTTGTGGATCACCATAGACAACATTGGTG
GCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCATCGTCA
GGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGGAATGAC
CACAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCCAGAGAA
ACCGGTGAAGCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTGGACAAA
AGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAATGCAATC
ACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTCGTCTAA
TTCATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAACCTCCGA
TAAACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAACAGTAAA
CCAACAAGCAAAACTAACTCTAACCCTAAGACAAAAAACAATACTTCGAA
CCATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAGCCGTTA
AAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAGAACCCT
CCGACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGCTTCAAG
TAATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACTCAGCAA
AGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGCTCAACA
AATGACGAACCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAAACGATT
AGAAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAAATTCAT
CACAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCAAAAGAT
TCTGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAAGAAAGA
AACCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAAATCCTA
CAACAAACCAAAACAAGTCTCCCTATACTAACAAACAACCACATAACGCA
CAATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTCTTCACA
AAACTCTTCATCAACCTCACCGAAAAAGACTAAATTTTCGAAAGAAACGC
ACATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAACAAAAT
CTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCTTTTGAA
TGAACACTTGGATGAATGCTTAACTTCTTGAGTTTATCATTCTTTTCACG
ACGAGGATCACGATGGACATGGACCAGAATTTCACAAACACATGTACCGA
ATCAATAAAGAGACTGGGACCAACATTTCACATGAAATGATTCACGCTTT
ACTGTTTGTCACAGATAATAACAAGATGTGCTGGTTTGTGCTACTATGAG
CGGCGTGGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACT
TCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTTTTCAGGAGAAAAAAA
CACAAAATAAAAATAGAAAAAAAACACATAGGATGGAGAATGAAGATGAA
GACTTTGCATTGGCTTTGAAACTGTTCACTGAACTAAATGAGGGCGAAGG
AGAGCAATCACAGTCCGTAAAAGGAGGTAAACCTGATGAAAAACTCTCCA
TCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAATATTCATGAA
CTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGCTGGCTAGTGT
ATCCGTACAATGGAGCCCAAGGATGACCTTGTGGATCACCATAGACAACA
TTGGTGGCGTTGTGATGGTCCTTGTGTTAAACGCCCTCCTTTCTTCGGCA
TCGTCAGGCGTGCTATGAATCGAGCGCCCTCTCCGCGCGACCGCTGGTGG
AATGACCACAAACAAAAATGTGGAGGAGCTTTCACGAAAATCAAGGAGCC
AGAGAAACCGGTGAAGCAATCTAAGAAAAGTAAAAAGTTAGAAGAAACTG
GACAAAAGCTTGGTTCCTCAAGTTCTGAAAGCAACAAAAATAATAAGAAT
GCAATCACAAACTGGTTTCAGAAAACAGATTCTTCAAAGCTTTCAACCTC
GTCTAATTCATCTAACTCCATCAGCATAGATTGTGAAGAAGATCTGAAAC
CTCCGATAAACCCGTGGGCAGACGATAGTTACACCAGTAATTCAAAGAAC
AGTAAACCAACAAGCAAAACTAACTCTAACCCTAAGACAAAAAACAATAC
TTCGAACCATGGAAACCAAAACAAAGGTAAATACCCAGCAGGTTCAACAG
CCGTTAAAGGAGGTGGGTCGCGAACTTCAACTATCACCTCCAAGGGGAAG
AACCCTCCGACCAATGAGAATGACATTTATCGGAGCTCCTCCACAGGTGC
TTCAAGTAATATCTACGGCTTCAAAATGTCTGCTAATAACAAAGAAGACT
CAGCAAAGCAACCCTTAGCCTCCTTTTCAGGCAACGGCAAACGAATAAGC
TCAACAAATGACGAACCTTCGGGAAACAGTGGACGAGAAAATTTTTTGAA
ACGATTAGAAAATAACATGAAAGGGAATACTCAAAGAAAACCCTCAACAA
ATTCATCACAAATTAGTATCCCTCCCTCTTCAAACACTTTCCGTAAACCA
AAAGATTCTGATTTCTCAATGAAAAACCAAAATAAGGACAGAACTCAAAA
GAAAGAAACCACTGAAAAAACTCCTCCGAACCAACCCTCGTTCTCAAGAA
ATCCTACAACAAACCAAAACAAGTCTCCCTATACTAACAAACAACCACAT
AACGCACAATCAAATTTAACAAACACTAAACGAAACCTTTCGTCTTCTTC
TTCACAAAACTCTTCATCAACCTCACCGAAAAAGACTAAATTTTCGAAAG
AAACGCACATGGTTATTTCTTCAGACGAAGAGGACAATGTACAGCAACAA
CAAAATCTTGTGGATTGCCCTGCGTGTCCTATGAGAGTTCCTGAACATCT
TTTGAATGAACACTTGGATGAATGCTTAACTTCTTGAGTTTATCATTCTT
TTCACGACGAGGATCACGATGGACATGGACCAGAATTTCACAAACACATG
TACCGAATCAATAAAGAGACTGGGACCAACATTTCACATGAAATGATTCA
CGCTTTACTGTTTGTCACAGATAATAACAAGATGTGCTGGTTTGTGCTAC
TATGAGCGGCGTGGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATT
GAAACTTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTTTTCAGGAGA
AAAAAACACAAAATAAAAATAGAAAAAAAACACATAGGATGGAGAATGAA
GATGAAGACTTTGCATTGGCTTTGAAACTGTTCACTGAACTAAATGAGGG
CGAAGGAGAGCAATCACAGTCCGTAAAAGGAGGTAAACCTGATGAAAAAC
TCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAATATT
CATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGCTGGC
TAGTGTATCCGTACAATGGAGCCCAAGGATGACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055982-proteinTCONS_00055982-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055982-exon-scaffold_266-1575043694:122035..122331TCONS_00055982-exon-scaffold_266-1575043694:122035..122331Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1575043694:119649..119757TCONS_00055982-exon-scaffold_266-1575043694:119649..119757Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1575043694:119360..119404TCONS_00055982-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1575043694:118988..119062TCONS_00055982-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1575043694:118757..118780TCONS_00055982-exon-scaffold_266-1575043694:118757..118780Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1575043694:117022..118578TCONS_00055982-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:122035..122331TCONS_00055982-exon-scaffold_266-1510915933:122035..122331Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:119649..119757TCONS_00055982-exon-scaffold_266-1510915933:119649..119757Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:119360..119404TCONS_00055982-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:118988..119062TCONS_00055982-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:118757..118780TCONS_00055982-exon-scaffold_266-1510915933:118757..118780Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1510915933:117022..118578TCONS_00055982-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:122035..122331TCONS_00055982-exon-scaffold_266-1491911889:122035..122331Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:119649..119757TCONS_00055982-exon-scaffold_266-1491911889:119649..119757Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:119360..119404TCONS_00055982-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:118988..119062TCONS_00055982-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:118757..118780TCONS_00055982-exon-scaffold_266-1491911889:118757..118780Clytia hemisphaericaexon
TCONS_00055982-exon-scaffold_266-1491911889:117022..118578TCONS_00055982-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..122331 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5104	21.8999	33.6533	34.8415	2.33852e-06	1.71903	1.95753	3.87109	2.08664	3.79627	1.09436	3.00727	3.86682	4.40596	3.79014	5.06471	3.15854	5.71353	1.61183	1.40349	3.56055	2.83958	22.1041	18.0821	1.64386e-06	1.74923e-06	2.48618	1.58636	13.8704	17.1128
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006640SprT-like_domain
IPR006642Znf_Rad18_put
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00055982 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.324e-92
Identity = 134/217 (61.75%), Postives = 164/217 (75.58%), Query Frame = 2 
Query:   62 DEDFALALKLFTELNEGEGEQSQSVKGGKPDEKLSIVDPSWELIDPVPNIHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 712
            D+D  LAL+L  E N  E E+  +       E LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CSI+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+VYH+FHDEVD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KI
Sbjct:    2 DDDLMLALRLQEEWNLQEAERDHA------QESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
BLAST of TCONS_00055982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN1.324e-9261.75SprT-like domain-containing protein Spartan OS=Hom... [more]
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