TCONS_00055922 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055922
Unique Name	TCONS_00055922
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	708

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_266:182945..187584+

transcript sequence

>TCONS_00055922 ID=TCONS_00055922|Name=TCONS_00055922|organism=Clytia hemisphaerica|type=transcript|length=708bp
GTctagagaagaagaagaagaagagaaatGAACAGTAAAATATGgcagat
gattttttatttcttgatGGGCGCATGTCTTACTGAGGCTGTACTCAACC
CAAATGGGACTCACGTTTGTAAAGAGACTGGAAACACCACTGTTTGTTGT
AAAGGTTGGAAACAACAGGGCAACGCGTGTCCATTAGACATCGACGAATG
CACAGCAAAACCATGTcaacaaaattgcaaaaacacTGCTGGAAGTTTTC
AATGTTCGTGTAACGTAGGATACAAAGTTGACCCTAAAGACTCTTCCAAA
TGTTTGGATATTGACGAGTGCACCACAAGTCCATGTCAACAAGATTGTAA
AAATACTGCTGGAAGTTTTCAATGTTCGTGTGGAGTGGGCTACAAAGTTG
AtccaaaagatttaaaaaagtgCTTGGACATAGACGAATGCACAACAAAA
CCATGTcaacaaaattgtaaaaacacACCTGGAAGTTTTCAATGTTCGTG
TGGAGTTGGCTACAAAGTTGATTCTAAAGATCCCACAAAGTGTTTGGACA
TCGACGAATGTTCAACAAAACCATGTcaacaaaattgcaaaaatacagCT
GGAGGTTTTCGATGCTCTTGCCGGGAGGGCTACAAAGTGGACCCGAAAGA
TTCCACGAAATGTTCTGACATCGATGAGTGCACAACAAAACCATGTCAGC
AAGATTGT

Run BLAST on NCBI

transcript from alignment at scaffold_266:182945..187584+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055922 ID=TCONS_00055922|Name=TCONS_00055922|organism=Clytia hemisphaerica|type=transcript|length=4640bp|location=Sequence derived from alignment at scaffold_266:182945..187584+ (Clytia hemisphaerica)
GTctagagaagaagaagaagaagagaaatGAACAGTAAAATATGgcagat
gattttttatttcttgatGGGCGCATGTCTTACTGAGGCTGTACTCAACC
CAAATGGGTGAGTTTGATTTTCCATTTGTGTTGAGACGGTCTAATCGACA
TGAAAATTCATATGATGAACAAAGCTAACAACATTCAACTTTCTGCATGA
TCATAATATTTTCGTATTGATATCTTTTTGGAATTCTCCCGATTTTAACT
TTTACTTCATTGTTTTACAACAGGACTCACGTTTGTAAAGAGACTGGAAA
CACCACTGTTTGTTGTAAAGGTTGGAAACAACAGGGCAACGCGTGTCCAT
TAGGTGAGTTAAAAGTCGGGCTTCTCTAGGCCATTCCCCTCTTCATTTTC
CGAGGTTCACAGCCTCCTGGACCTCTAGTTTAATAGctcatttcacagtc
gcaaagcgtaatgggtaatcaggagcactgcgcgctaatgacgacttact
attggtccaaagttttgaaaatttttgaagatttttgcgtctagctaACC
GGAAGTCGTTATTTGAGCTCAACAAGTCCTGAtgacccatgattcatttc
gactctGAAATGGGAGAAAGACCACCTCAAGATTCCCAAGTAGTTCAAAG
GAATGAGGATATTCGAAGTCGTCACTcgccctggatatcctctcttgtAG
GCTTTTTGTTataaaacattgaaacaatataagattacatgtacaaaatt
aaatttcttcATTCTTATAAccttttttaaccgttttagACATCGACGAA
TGCACAGCAAAACCATGTcaacaaaattgcaaaaacacTGCTGGAAGTTT
TCAATGTTCGTGTAACGTAGGATACAAAGTTGACCCTAAAGACTCTTCCA
AATGTTTGGGTGAGATTTTCAATGTTATAAATATTTACCCACACTCAGTT
AATGAATCGAGGCTACACATTGGGAAGGGCCTTTTTCAGGGAAGGGTTAT
TAAAGTAAACACTCGATAGAAATACCGAGAAAAATCGCGaaatattttat
ctttcttTCAGATATTGACGAGTGCACCACAAGTCCATGTCAACAAGATT
GTAAAAATACTGCTGGAAGTTTTCAATGTTCGTGTGGAGTGGGCTACAAA
GTTGAtccaaaagatttaaaaaagtgCTTGGGTAAGATTGTGTAGGAATG
TCTATAACTGAGACTGAGTAGTTTAATATTTGTTAACATAGCCAtttaga
caaaaaaaattaaatatgttATGCTCTGGCAATCATCTTTCTATGCTCTG
AGTGAAGATAGCTGGACTGGActaaaacagtttttttatctttttaaata
ctAGACATAGACGAATGCACAACAAAACCATGTcaacaaaattgtaaaaa
cacACCTGGAAGTTTTCAATGTTCGTGTGGAGTTGGTTACAAAGTTGACC
CTAAGGATTTGACAAAGTGTTTGGGTACGATTTTAAACGCACTTAGTTTG
TAATTATCTTACAGCCCTGCAAAGGTAggctaaaaaacaaaaataggcAA
ATCAAGCCGCTGCGCTTTAATGGGTGTTAACTCTCAATCCAAGAAAGATG
GAATCAGCAATCCTCGATATTTAAAGATAAATAGAAATTCTAGACTATCT
CTGCGAAGAGGTATTGCTTTCAATTTACAccctttttctttcaagaatGT
CAAAATGTGTGAACTGCCATATTTAGTACAGACTATAATCTCTTTAATTT
TCAGACATCGACGAATGCACAACAAATCCATGTCAGCAAGATTGCAAAAA
TACTGCTGGAAGTTTCCAATGTTCATGCAAAGGAGGCTACAAAGTTGACC
CCAAAGATTCTACAAAGTGTTTAGGTAAGGGTTGATCCAGTAAAGTTTCT
TGTAGTAATTTCTTCAATTTATTACCTTATCGTACTATGAAATGTCATAG
GGTTGATCGTAAAGATTTAACAAAATGTTTGGGTAAGTTCTTAGCTTACc
cattataataaaaaatcttACCAGTGAAAAGAAAAGCTCGAGAATTGATA
AATCGAAAAAATAGGAGTTTTCAATCACATTGACCCCTTTCTAACAGACA
TCGACGAATGCACAACAAATCCATGTCAACAAGATTGTAAAAACACTGCT
GGAAGTTTTAAATGTTCGTGTGGAGTAGGCTACAAAGTTGACCCCAAAGA
TAAGACAAAATGTTTAGGTAAGCCTTAATTTCACAAGACTATTTTTGAAA
TACCATTATCTGAATGAGATGCTAGACAATCGGATGAAAATTATATCCAT
GATGATGATCCTTTATCTATTAATTTCTAAACAGACATCGATGAATGCAC
AGCAAAACCATGTCAGCAAGAATGTAAAAACACACCTGGAAGTTTTAAAT
GTTCGTGTGGAGTAGGCTACAAAGTTGATTCTAAAGATCCCACAAAGTGT
TTGGGTAGGTATTACGCAACGGGTTCATGTTTAACAATTTTCATACCTAT
CTTTCTAAGTGACATCCGAAGTGATAtccgaatgaatgaatgaatgaatg
aatgatatTCTAAGCTTTCCTTCATACTCCCTCAGACATCGACGAATGTT
CAACAAAACCATGTcaacaaaattgcaaaaatacagCTGGAGGTTTTCGA
TGCTCTTGCCGGGAGGGCTACAAAGTGGACCCGAAAGATTCCACGAAATG
TTCTGGTAAGTGACGGAGAGAGTTCAGTACGTAAATTGTGATTACCCTTT
TCACGTAAATAAGTCagatcacgcatcacgcaaaaTCGTTGGTTGCTCGT
TTGGAAAGACTTAATCCATGTTAACAGTAAGATGAAAATTATATCTATAA
TATCTTCTTTATCTATTAAATCCAAACAGACATCGATGAATGCACAACAA
ATCCATGTCAACAAGATTGTAAAAACACTGCTGGAAGTTTTCAATGTTCG
TGTGGAGTTGGCTACAGAGTTGATCCTAAAGATTTGACAAAATGTTTAGG
TAAGCCTCAATTTGACTTGAGTATTTGTGGAAATCGCCATAACTTAAGTG
TAGTAACAAAGGTGTGCATGTGgatatttgttctttttcaaatttaccgA
AAAAGTTTCCAGAAGTTTCTGACAGATGTTCTCCTTAAAATACTAGAAAA
TCCTACTTTTAGTCGGTTCAAAGTACAATAATTTGTTCGTTCTTTTAGAC
ATCAACGAATGCACCACAAATCCATGTCAACAAGATTGTAAAAACACTGC
TGGAAGTTTTCAGTGTTCGTGTAGAGTTGGCTACAAAGTCGATCAAAAAG
ATTCAACAAAATGCTTAGGTAAACCTTAATTTCACAagaccatttttgaa
atacCATTATCTGAATGAGTACAACTAAGACCAATTATAAGATTTCCCAA
TAAGTTTCTGACAGACTTCAAAATACTATTTTACGGACGGTCATACAATA
CGCAATTTTTCTCTCTCAGATATCGACGAATGTTCAACAAAACCATGTca
acaaaattgcaaaaacacTGCTGGAAGTTTTAAATGTTCGTGTAACGTAG
GCTACAAAGTTGACCCCAAAGATAAGACAAAATGTTTGGGTAAGTATCAA
TTTAACATGAAGTATCTCGGAAAAGTAACGATGTTGTTAAATCAATGACT
CGAGCCAAGCCATTCATGGGTTTGTAATTTTTACCTTTCCAGAAGATTCT
GATGTAAGCTTTTCTATCTAACACGAAATTGTTCTACTTTTCACTCTTTT
AGATATCGATGAATGTACGACAAAATCTTGtcagcaaaattgcaaaaata
ctgCTGGAAGTTTTCAATGTTCGTGTAAAGATGGCTACAAAGTTGACCCT
AAAGATAAGACAAAGTGTCTAGGTAGGTAGTTAGCAAGTTAACTGTGTCC
AGATCAAgtttaaaatctgaaatctgACTGAATGATTTTCCCATTTGAAT
AAAGAATTGACGATTATACATACAAGCCCCTCTCTTTATTCTCTTTCTTA
GACATTGATGAATGCACAACAAATCCTTGtcagcaaaattgcaaaaacac
TGTTGGAAGTTTTCAATGTTCGTGTAGAAAGGGATACAAAGTCGACCAGA
AAGATTCGACGAAGTGCTTGGGTAAGACTTTGACCAAATAAAATTCGAGT
CGAAGTAAttcttaatttcattaaaacgCTTTACTACTTATTGTCAAAAT
GTCAATCTAGATTGATAAGGCCACATCTGTGGGTGCTAATTCCATGACAA
TAACATACACATCGACCTTCATCGTGAAtggactttttttctttctcaga
CATCGACGAATGTGCNAATAACATACACATAGACCTTCATCGTGAAtgga
ctttttttctttctcagaCATCGACGAATGTGCTACAAAACCATGtcatc
aaaattgtaaaaatactGCTGGAAGTTTTAAATGTTCATGCAAAGTGGGC
TACAAAGTTGACCCGAAGAACTCCTCAAAATGCTTGGGTAATAACTTGAA
TTTAAGGCCATAAGAGTAATTCTTtgcactttaaaaaaatacctcacAGT
AAATCAAGATATTTATAAAAGATAACCCGCACTTTTACTGTTATTTCAGA
CATCGATGAGTGCACAACAAAACCATGTCAGCAAGATTGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035215	XLOC_035215	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_266	supercontig	scaffold_266:182945..187584 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.1169	0.184824	0	0.143233	0.745598	0.331641	0.528138	0	1.51576	0	0.513729	0.448876	0.476322	1.8122	0.265669	0.039798	0	0.0877951	0	0.654654	0.00550556	0	0	0.19457

Blast

[Close]

BLAST of TCONS_00055922 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 1.171e-35
Identity = 85/212 (40.09%), Postives = 119/212 (56.13%), Query Frame = 1

Query:   94 LNPNGTHVCKETGNTTVCCKGWK--QQGNACPLDIDECT--AKPCQ--QNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSP---CQQDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKPCQQNCKNTPGSFQCSCGVGYKVDSKDPTKCLDIDECST----KPCQQNCKNTAGGFRCSC-REGYKVDPKDSTKCSDIDECTT 687
            +N  G++ C++  N   C +G+   ++G  C +D+DEC   A+PC     C N+ GSF+C C  GY  D   S  C+D++EC   P   C   C+NT GS+ CSC VG+++   D + C DI+EC++ PC Q C N  GS+QC C  GY++   D   C DIDEC+       C   C N  G F+CSC   GY++ P +   C DIDEC T
Sbjct:  326 INTEGSYTCQK--NVPNCGRGYHLNEEGTRC-VDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFD-GISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLS-VDGRSCEDINECSSSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAP-NGRNCQDIDECVT 531

HSP 2 Score: 126.331 bits (316), Expect = 1.335e-32
Identity = 77/196 (39.29%), Postives = 107/196 (54.59%), Query Frame = 1

Query:  145 CCKGWKQQGNACPLDIDECTAK----PCQQNCKNTAGSFQCSCNV-----GYKVDPKDSSKCLDIDECT--TSPCQ--QDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKP---CQQNCKNTPGSFQCSCGVGYKVDSKDPTKCLDIDECSTKPCQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECT 684
            C  G+ Q      +DI+EC +     P    C NT GS+ C  NV     GY ++ ++ ++C+D+DEC     PC     C N+ GSF+C C  GY  D    + C+D++EC   P   C   C+NT GS+ CSC VG+++ S D   C DI+ECS+ PC Q C N  G ++C CR GY++   D   C DIDEC 
Sbjct:  294 CKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLN-EEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGIS-RMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRL-SVDGRSCEDINECSSSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECA 486

HSP 3 Score: 115.161 bits (287), Expect = 9.285e-29
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 1

Query:  184 LDIDECTAKP---CQQNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSPCQQDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTT----KPCQQNCKNTPGSFQCSC-GVGYKVDSKDPTKCLDIDECSTK----PCQQNCKNTAGGFRC---SCREGYK 636
            +D++EC   P   C   C+NT GS+ CSC+VG+++   D   C DI+EC++SPC Q+C N  GS+QC C  GY++   D   C DIDEC        C   C N PGSFQCSC   GY++ + +   C DIDEC T        + C N  GGFRC    C E Y+
Sbjct:  398 VDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLS-VDGRSCEDINECSSSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRL-APNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYR 561

HSP 4 Score: 107.842 bits (268), Expect = 3.131e-26
Identity = 83/235 (35.32%), Postives = 124/235 (52.77%), Query Frame = 1

Query:   79 LTEAVLNPNGTHVCKETGNTTVCCKGWK-QQGNACPLDIDECTA--KPCQQN--CKNTAGSFQCS----CNVGYKVDPKDSSKCLDIDECTTS----PCQQDCKNTAGSFQC-----SCGVGYKVDPKDLKKCLDIDECT--TKPCQ--QNCKNTPGSFQCSCGVGYKVDSKDPTKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTKPCQQDC 708
            L E+ +N  G+  C+   +   C  G++  + N+C  DIDEC +    C  +  C+NT GSF+C     C  G+  D      C+DI+EC +     P    C NT GS+ C     +CG GY ++ ++  +C+D+DEC    +PC     C N+PGSF+C C  GY  D      C+D++EC   P   C   C+NT G + CSC  G+++   D   C DI+EC++ PC Q+C
Sbjct:  229 LGESCINTVGSFRCQRDSS---CGTGYELTEDNSCK-DIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDAL--GNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLN-EEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGIS-RMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLS-VDGRSCEDINECSSSPCSQEC 454

HSP 5 Score: 87.4261 bits (215), Expect = 2.113e-19
Identity = 72/226 (31.86%), Postives = 101/226 (44.69%), Query Frame = 1

Query:  211 PCQQNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSP----CQQDCKNTAGSFQC----SCGVGYKV----------------------------------DPK----------DLKKCLDIDECTTK----PCQQNCKNTPGSFQC-----SCGVGYKVDSKDPTKCLDIDECS--TKPC--QQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTKP 693
            PC+Q C++T     CSC VGY++   D   C D++EC T        + C NT GSF+C    SCG GY++                                   PK           L  C+DI+EC +     P    C NT GS+ C     +CG GY ++ ++ T+C+D+DEC+   +PC     C N+ G FRC C+ GY  D   S  C D++EC   P
Sbjct:  185 PCKQQCRDTGDEVVCSCFVGYQL-LSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLN-EEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFD-GISRMCVDVNECQRYP 407

The following BLAST results are available for this feature:

BLAST of TCONS_00055922 vs. Swiss-Prot (Human)

BLAST of TCONS_00055922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBLN1	1.171e-35	40.09	Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4	[more]

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TCONS_00055922 (transcript) - C. hemisphaerica