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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055924 ID=TCONS_00055924|Name=TCONS_00055924|organism=Clytia hemisphaerica|type=transcript|length=2335bpRun BLAST on NCBI transcript from alignment at scaffold_266:182945..188884+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055924 ID=TCONS_00055924|Name=TCONS_00055924|organism=Clytia hemisphaerica|type=transcript|length=5940bp|location=Sequence derived from alignment at scaffold_266:182945..188884+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055924 vs. Swiss-Prot (Human)
Match: LTBP4 (Latent-transforming growth factor beta-binding protein 4 OS=Homo sapiens GN=LTBP4 PE=1 SV=2) HSP 1 Score: 295.049 bits (754), Expect = 3.300e-84 Identity = 213/579 (36.79%), Postives = 306/579 (52.85%), Query Frame = 1
Query: 223 NCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSP---CQQDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDEC--TTKPCQQ-NCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTNPC---QQDCKNTAGSFQCSCKGGYKVDPKDSTKCL-DIDECTTNPCQ---QDCKNTAGSFKCSCGVGYKVDPKDKTKCLDIDECTAKP---CQQECKNTPGSFKCSCGVGYKVDSKDPTKCLDIDECSTKPC--QQNCKNTAGGFRC-SCREGYKVDPKDSTKCSDIDECTTN--PC--QQDCKNTAGSFQCSCGVGYRVDPKDLTKCLDINECTTNPC---QQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTK-PCQQN-CKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKSC----QQNCKNTAGSFQC--SCKDGYKVDPKDKTKCLDIDECTTNPCQ----QNCKNTVGSFQC--SCRKGYKVDQKDSTKCLDIDECATKP---CHQNCKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTKPC---QQDCKNTAGSFQCSC 1821
C + + C+C+ G+++ P+ ++C+D+DEC P C+N+ GSF+C CG G++ P+ +CLD+DEC PC C+NTPGSF C C GY+ P + C D+DECT +P + CKN GSF+C C G++ + C D+DEC P C NTAGSF C+C G++ C D+DEC P C+NT GSF+C C +G++ ++ ++C D+DEC Q C N+ G F+C +C G+ + +C+D+DEC++ PC C NT GSF+CSC GYR C D+NEC +C NT GSF C+C GY+ + ++ CLD+DECS + CQ C NT GSF+C C G++ P D CLD+DEC + Q C+N+ GS++C C GY P+ C D+DEC + Q C+NT GS++C +C GY+ C D+DEC + H C+N GSF+C C GY+ ++ C+D++EC T C+N GSF C C
Sbjct: 560 RCISRPSGYTCACDSGFRLSPQ-GTRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFR-----GSACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAG-SECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLH---RGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGP-DLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGT--CDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYE-GARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVC 1118 HSP 2 Score: 291.582 bits (745), Expect = 5.831e-83 Identity = 217/578 (37.54%), Postives = 305/578 (52.77%), Query Frame = 1
Query: 115 VCKETGNTTVCCKGWK--QQGNACPLDIDECTAKP---CQQNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSPCQQD---CKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKP---CQQNCKNTPGSFQCSCGVGYKVDPKDLTKC-LDIDECTTNPC---QQDCKNTAGSFQCSCKGGYKVDPKDSTKCLDIDECTTNP---CQQDCKNTAGSFKCSCGVGYKVDPKDKTKCLDIDECTAKPC--QQECKNTPGSFKC-SCGVGYKVDSKDPTKCLDIDECST--KPC--QQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC---QQDCKNTAGSFQCSCGVGYRVDPKDLTKCLDINECT-TNPCQQD-CKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTK-PC---QQNCKNTAGSFKC--SCNVGYKVDPKDKTKCLDIDECTTKSCQ----QNCKNTAGSFQC--SCKDGYKVDPKDKTKCLDIDECTTNP---CQQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKP---CHQNCKNTAGSFKCSCK 1704
+ + +G T C G++ QG C +D+DEC P C+N+ GSF+C C G++ P+ +++CLD+DEC P D C+NT GSF C C GY+ P C D+DECT P + CKN PGSF+C C G++ + C D+DEC P C NTAGSF C+C G++ C D+DEC +P C+NT GSF+C C +G++ + ++C D+DEC QEC N+PGSF+C +C G+ + +C D+DECS+ PC +C NT G FRCSC GY+ C+D++EC +C NT GSF C+C GYR P+ + CLD++EC+ + CQ C NT GSF+C C G++ D CLD+DEC + P Q C+N+ GS++C C+ GY P+ C D+DEC + Q C+NT GS++C +C GY+ P C D+DEC C+N GSFQC C +GY+ +D C+D++EC T C+N GSF C C
Sbjct: 562 ISRPSGYTCACDSGFRLSPQGTRC-IDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHG-ASCQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRG-----SACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRG---RCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAG-PDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEG--TCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYE-GARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVCP 1119 HSP 3 Score: 278.87 bits (712), Expect = 1.280e-78 Identity = 200/539 (37.11%), Postives = 289/539 (53.62%), Query Frame = 1
Query: 346 CKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKP---CQQNCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTNPCQQD---CKNTAGSFQCSCKGGYKVDPKDSTKCLDIDECTTNP---CQQDCKNTAGSFKCSCGVGYKVDPKDKTKCLDIDECTAKPC---QQECKNTPGSFKCSCGVGYKVDSKDP-TKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC--QQDCKNTAGSFQC-SCGVGYRVDPKDLTKCLDINECTTN--PC--QQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKPC---QQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKSCQQN--CKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECT-TNPC---QQNCKNTVGSFQC--SCRKGYKVDQKDSTKCLDIDEC---ATKPC-HQNCKNTAGSFKC--SCKVGYKVDPKNSSKCLDIDECTTKP---CQQDCKNTAGSFQCSCRDGY 1833
C + + C+C G+++ P+ +C+D+DEC P C+N+PGSF+C CG G++ P+ +CLD+DEC P D C+NT GSF C C GY+ P ++ C D+DECT +P + CKN GSF+C C G++ ++ D+DEC +P C NT GSF C+C G++ S+ P C D+DEC+ P C+NT G F+C C G++ + ++C D+DEC + Q+C N+ GSFQC +C G+ + +C D++EC++ PC C NT GSF+CSC GY+ C D++EC C NT GSF C+C GY+ P+ + CLD+DEC+ + Q+ C NT GSF+C C G++ P D CLD+DEC P Q C+N+ GS++C C GY + + C D+DEC + C Q C+NT GS++C +C GY+ P C D+DEC + C+N GSFQC C GY
Sbjct: 561 CISRPSGYTCACDSGFRLSPQG-TRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRGSACEE----DVDECAQEPPPCGPGRCDNTAGSFHCACPAGFR--SRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHL---HRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGP-DLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGT--CDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGY 1080 HSP 4 Score: 234.572 bits (597), Expect = 6.140e-64 Identity = 188/557 (33.75%), Postives = 272/557 (48.83%), Query Frame = 1
Query: 706 CKNTAGSFKCSCGVGYKVDPKDKTKCLDIDECTAKP---CQQECKNTPGSFKCSCGVGYKVDSKDPTKCLDIDECSTKPCQ---QNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC---QQDCKNTAGSFQCSCGVGYRVDPKDLTKCL-DINECTTNPCQ---QDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKP---CQQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKSC--QQNCKNTAGSFQC-SCKDGYKVDPKDKTKCLDIDECTTN--PC--QQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKPC---HQNCKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTK-PCQQD-CKNTAGSFQCSCRDGYRVDPKD---------RTKCQPTCLENGCVQGVCSAPNFCDCHPGFVGKNCSS-----ECSEDTFGKNCSQICLCKNGASCDKVNGSCTCTPGWIGEFCEKACENSWGLGCE------NNFTCVANQTRATDHVTGRCECERGYTGINCEKKCA 2232
C + + C+C G+++ P+ T+C+D+DEC P C+N+PGSF+C CG G++ + +CLD+DEC P C+NT G F C C GY+ P ++ C D+DECT +P + CKN GSF+C C G+R + C D++EC P C NTAGSF C+C G++ + C D+DEC+ P C+NT GSF+C C +G++ + ++C D+DEC Q C N+ GSFQC +C G+ + + +C D+DEC++ PC +C NT GSF+CSC GY+ C D++EC H C NT GSF C+C GY+ P+ +S CLD+DEC+ + CQ C NT GSF+C C G+R P R + C C S DC PG+ + EC E +G +IC C+ GS CTP C+ + + G GC+ N C A+ + +C C++GY G + C
Sbjct: 561 CISRPSGYTCACDSGFRLSPQG-TRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPRA-AECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRG-----SACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFR-SRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLH---RGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQE--YGP---EIC---GAQRCENTPGSYRCTPA-----CDPGYQPTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCV 1090 HSP 5 Score: 202.216 bits (513), Expect = 1.524e-53 Identity = 134/367 (36.51%), Postives = 195/367 (53.13%), Query Frame = 1
Query: 823 ECKNTPGSFKCSCGVGYKVDSKDPTKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPCQQD---CKNTAGSFQCSCGVGYRVDPKDLTKCLDINECTTNPC---QQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKPCQ---QNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKS---CQQNCKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECTTNPC--QQNCKNTVGSFQC-SCRKGYKVDQKDSTKCLDIDECAT--KPC--HQNCKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTKPC---QQDCKNTAGSFQCSCRDGYRVDPK 1848
C + P + C+C G+++ + T+C+D+DEC P C+N+ G FRC C G++ P+ + +C D+DEC P D C+NT GSF C C GY+ P + C D++ECT +P + CKN GSF+C C G++ + D+DEC+ +P C NTAGSF C+C G++ C D+DEC C+NT GSFQC C G++ + ++C D+DEC + Q C N+ GSFQC +C G+ + + +C D+DEC++ PC H +C NT GSF+CSC GY+ C D++EC +C NT GSF C+C GYR P+
Sbjct: 560 RCISRPSGYTCACDSGFRLSPQG-TRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRGSACEE----DVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRG---RCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPR 914 The following BLAST results are available for this feature:
BLAST of TCONS_00055924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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