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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055925 ID=TCONS_00055925|Name=TCONS_00055925|organism=Clytia hemisphaerica|type=transcript|length=2586bpRun BLAST on NCBI transcript from alignment at scaffold_266:182945..194194+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055925 ID=TCONS_00055925|Name=TCONS_00055925|organism=Clytia hemisphaerica|type=transcript|length=11250bp|location=Sequence derived from alignment at scaffold_266:182945..194194+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055925 vs. Swiss-Prot (Human)
Match: LTBP4 (Latent-transforming growth factor beta-binding protein 4 OS=Homo sapiens GN=LTBP4 PE=1 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 4.948e-68 Identity = 204/601 (33.94%), Postives = 293/601 (48.75%), Query Frame = 1
Query: 223 NCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSP---CQQDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDEC--TTKPCQQN-CKNTPGSFQCSCGVGYKVDSKDPTKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKC-SDIDECTTNPC---QQDCKNTAGSFQCSCGVGYRVDPKDLTKCLDINECTTNP---CQQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKPC--QQNCKNTAGSFKC-SCNVGYKVDPKDKTKCLDIDECTTKS----CQQNCKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECTTNPC---QQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKPCHQN--CKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTK-PC---QQDCKNTAGSFQC--SCRDGYRVDPKDRTKCQPTCLENGCVQGVCSAPNFCDCHPGFVGKNCSSECS---EDTFGKNCSQICLCKN------GASCDKVNGS--CTCTPGWIG-------------EFCEKACENSWGLGCENNFTCV-ANQTRATDHVTGRCECERGYTG 1848
C + + C+C+ G+++ P+ ++C+D+DEC P C+N+ GSF+C CG G++ P+ +CLD+DEC PC C+NTPGSF C C GY+ C D+DEC+ P + CKN G FRC C G++ + C D+DEC P C NTAGSF C+C G+R C D++EC +P C+NT GSFQC C +G++ + S +C D+DEC Q C N+ GSF+C +C G+ + + +C D+DEC++ + +C NT GSF+CSC GY+ C D++EC C NT GSF C+C GY+ + ++ CLD+DEC+ + Q+ C NT GSF+C C G++ P +S CLD+DEC + P Q C+N+ GS++C C GY P+ C E G +C A C+ PG C+ C + T G C + C+N A C + GS C C G+ G E + C + E +F CV N D +TGRC R G
Sbjct: 560 RCISRPSGYTCACDSGFRLSPQ-GTRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHG-ASCQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFR-----GSACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAGS-ECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHL---HRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGPDLAS-CLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYG--PEICGA-QRCENTPG--SYRCTPACDPGYQPTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVCPNSPEEFDPMTGRCVPPRTSAG 1140 HSP 2 Score: 223.787 bits (569), Expect = 3.715e-60 Identity = 167/437 (38.22%), Postives = 231/437 (52.86%), Query Frame = 1
Query: 142 VCCKGWKQQGNACPLDIDECTAKPC---QQNCKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSP---CQQDCKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKPC--QQNCKNTPGSFQC-SCGVGYKVDSKDPTKCLDIDECST--KPC--QQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC---QQDCKNTAGSFQCSCGVGYRVDPKDLTKCLDINECT-TNPCQQD-CKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTK-PC---QQNCKNTAGSFKC--SCNVGYKVDPKDKTKCLDIDECTTKSCQ----QNCKNTAGSFQC--SCKDGYKVDPKDKTKCLDIDECTTNP---CQQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKP---CHQNCKNTAGSFKCSCK 1344
VC G++ G+AC D+DEC +P C NTAGSF C+C G++ + C D+DEC SP C+NT GSFQC C +G++ + +C D+DEC Q C N+PGSFQC +C G+ + +C D+DECS+ PC +C NT G FRCSC GY+ C+D++EC +C NT GSF C+C GYR P+ + CLD++EC+ + CQ C NT GSF+C C G++ D CLD+DEC + P Q C+N+ GS++C C+ GY P+ C D+DEC + Q C+NT GS++C +C GY+ P C D+DEC C+N GSFQC C +GY+ +D C+D++EC T C+N GSF C C
Sbjct: 697 VCPAGFR--GSACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAG-SECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRG---RCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAG-PDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEG--TCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYE-GARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVCP 1119 The following BLAST results are available for this feature:
BLAST of TCONS_00055925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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