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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055927 ID=TCONS_00055927|Name=TCONS_00055927|organism=Clytia hemisphaerica|type=transcript|length=4243bpRun BLAST on NCBI protein sequence of TCONS_00055927-protein >TCONS_00055927-protein ID=TCONS_00055927-protein|Name=TCONS_00055927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1082bp MNSKIWQMIFYFLMGACLTEAVLNPNGTHVCKETGNTTVCCKGWKQQGNARun BLAST on NCBI transcript from alignment at scaffold_266:182945..194194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055927 ID=TCONS_00055927|Name=TCONS_00055927|organism=Clytia hemisphaerica|type=transcript|length=11250bp|location=Sequence derived from alignment at scaffold_266:182945..194194+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:182945..194194+ >TCONS_00055927 ID=TCONS_00055927|Name=TCONS_00055927|organism=Clytia hemisphaerica|type=CDS|length=81225bp|location=Sequence derived from alignment at scaffold_266:182945..194194+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055927 vs. Swiss-Prot (Human)
Match: LTBP4 (Latent-transforming growth factor beta-binding protein 4 OS=Homo sapiens GN=LTBP4 PE=1 SV=2) HSP 1 Score: 293.123 bits (749), Expect = 1.641e-80 Identity = 219/577 (37.95%), Postives = 307/577 (53.21%), Query Frame = 1
Query: 115 VCKETGNTTVCCKGWK--QQGNACPLDIDEC--TAKPCQQN-CKNTAGSFQCSCNVGYKVDPKDSSKCLDIDECTTSPCQQD---CKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKP---CQQNCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTNP---CQQDCKNTAGSFQCSCKGGYKVDPKDSTKCLDIDECTTNP---CQQDCKNTAGSFKCSCGVGYKVDPKDKTKCLDIDEC---TAKPCQQECKNTPGSFKC-SCGVGYKVDSKDPTKCLDIDECST--KPC--QQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC---QQDCKNTAGSFQCSCGVGYRVDPKDLTKCLDINECT-TNPCQQD-CKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTK-PC---QQNCKNTAGSFKC--SCNVGYKVDPKDKTKCLDIDECTTKSCQ----QNCKNTAGSFQC--SCKDGYKVDPKDKTKCLDIDECTTNP---CQQNCKNTVGSFQCSCRKGYKVDQKDSTKCLDIDECATKP---CHQNCKNTAGSFKCSC 1701
+ + +G T C G++ QG C +D+DEC PC C+N+ GSF+C C G++ P+ +++CLD+DEC P D C+NT GSF C C GY+ P C D+DECT P + CKN PGSF+C C G++ + D+DEC P C NTAGSF C+C G++ C D+DEC +P C+NT GSF+C C +G++ + ++C D+DEC A P QEC N+PGSF+C +C G+ + +C D+DECS+ PC +C NT G FRCSC GY+ C+D++EC +C NT GSF C+C GYR P+ + CLD++EC+ + CQ C NT GSF+C C G++ D CLD+DEC + P Q C+N+ GS++C C+ GY P+ C D+DEC + Q C+NT GS++C +C GY+ P C D+DEC C+N GSFQC C +GY+ +D C+D++EC T C+N GSF C C
Sbjct: 562 ISRPSGYTCACDSGFRLSPQGTRC-IDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHG-ASCQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRGSACE----EDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACP-GQECVNSPGSFQCRTCPSGHHLHRG---RCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAG-PDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEG--TCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYE-GARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVC 1118 HSP 2 Score: 280.796 bits (717), Expect = 1.469e-76 Identity = 201/539 (37.29%), Postives = 289/539 (53.62%), Query Frame = 1
Query: 346 CKNTAGSFQCSCGVGYKVDPKDLKKCLDIDECTTKP---CQQNCKNTPGSFQCSCGVGYKVDPKDLTKCLDIDECTTNPCQQD---CKNTAGSFQCSCKGGYKVDPKDSTKCLDIDECTTNP---CQQDCKNTAGSFKCSCGVGYKVDPKDKTKCLDIDECTAKP---CQQECKNTPGSFKCSCGVGYKVDSKDP-TKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPC--QQDCKNTAGSFQC-SCGVGYRVDPKDLTKCLDINECTTN--PC--QQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKPC---QQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKS-CQQN-CKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECT-TNPC---QQNCKNTVGSFQC--SCRKGYKVDQKDSTKCLDIDEC---ATKPC-HQNCKNTAGSFKC--SCKVGYKVDPKNSSKCLDIDECTTKP---CQQDCKNTAGSFQCSCRDGY 1833
C + + C+C G+++ P+ +C+D+DEC P C+N+PGSF+C CG G++ P+ +CLD+DEC P D C+NT GSF C C GY+ P ++ C D+DECT +P + CKN GSF+C C G++ ++ D+DEC +P C NT GSF C+C G++ S+ P C D+DEC+ P C+NT G F+C C G++ + ++C D+DEC + Q+C N+ GSFQC +C G+ + +C D++EC++ PC C NT GSF+CSC GY+ C D++EC C NT GSF C+C GY+ P+ + CLD+DEC+ + CQ C NT GSF+C C G++ P D CLD+DEC P Q C+N+ GS++C C GY + + C D+DEC + C Q C+NT GS++C +C GY+ P C D+DEC + C+N GSFQC C GY
Sbjct: 561 CISRPSGYTCACDSGFRLSPQG-TRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRGSACEE----DVDECAQEPPPCGPGRCDNTAGSFHCACPAGFR--SRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHL---HRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGAS-CLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGP-DLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGT--CDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQ--PTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGY 1080 HSP 3 Score: 203.371 bits (516), Expect = 1.414e-52 Identity = 134/367 (36.51%), Postives = 195/367 (53.13%), Query Frame = 1
Query: 823 ECKNTPGSFKCSCGVGYKVDSKDPTKCLDIDECSTKP---CQQNCKNTAGGFRCSCREGYKVDPKDSTKCSDIDECTTNPCQQD---CKNTAGSFQCSCGVGYRVDPKDLTKCLDINECTTNPC---QQDCKNTAGSFQCSCRVGYKVDQKDSTKCLDIDECSTKP---CQQNCKNTAGSFKCSCNVGYKVDPKDKTKCLDIDECTTKS---CQQNCKNTAGSFQCSCKDGYKVDPKDKTKCLDIDECTTNPC--QQNCKNTVGSFQC-SCRKGYKVDQKDSTKCLDIDECAT--KPC--HQNCKNTAGSFKCSCKVGYKVDPKNSSKCLDIDECTTKPC---QQDCKNTAGSFQCSCRDGYRVDPK 1848
C + P + C+C G+++ + T+C+D+DEC P C+N+ G FRC C G++ P+ + +C D+DEC P D C+NT GSF C C GY+ P + C D++ECT +P + CKN GSF+C C G++ + D+DEC+ +P C NTAGSF C+C G++ C D+DEC C+NT GSFQC C G++ + ++C D+DEC + Q C N+ GSFQC +C G+ + + +C D+DEC++ PC H +C NT GSF+CSC GY+ C D++EC +C NT GSF C+C GYR P+
Sbjct: 560 RCISRPSGYTCACDSGFRLSPQG-TRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPR-AAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGAS-CQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFRGSACEE----DVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSR-GPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPN-TAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRG---RCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPR 914 The following BLAST results are available for this feature:
BLAST of TCONS_00055927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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