TCONS_00055929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055929
Unique NameTCONS_00055929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055929 ID=TCONS_00055929|Name=TCONS_00055929|organism=Clytia hemisphaerica|type=transcript|length=1919bp
ggcgatggctcaagggatagagcgctggcttccgaatccgaaggtctttc
tttggtggtggttcgaatcccactcggtgcgaaaattagacNNctcagaa
actcagacagtcagaaaagagaaagacggGATCAGAGATAAGGATCACAT
TTCGGAGGTTTGTATCTTACGTTTTCCAAAGTCGAAAAGTCAAAGTTACC
AGATTACATTCCAATATTCCACTTTATAAAGGATGTCAGAATATGGGCAG
GTGAAACttggaaaattgaaattgaaaggagaagggaaaagtaaaaagaa
aagtaagaaaaataaacgaaaaCATGATGAAGAAGGAGGCGAATCTTCAT
CAAGTACGAAGGCTTGGAATGAGGAGACCAAAAAGTATCATGGCTGGTGG
CCCTTAAAGACTTTTGAGGATCTTGGTTGTGGTATTGTAGCTGTACAGAC
AAGTTTCAAGAACTCGTATATTTTTGCAGTAGACAATGGAACTTTGAGAT
TAGGATCTGAGCATGATGATCATTTAGAAGCCATACCAATGGAAGAAGAA
ATCTTCACTTTGATCAAAATCTCTGAAAATAAAATTGCCTTCAAATCAGG
ATAtgGTAAATACGTATCAGTGAACGCTCGAGGGGATGTTATGGCTCGTT
CAGAAGCAGTTGGACCTCAAGAACAAATAGAGGTTGTGATAGAGAATGAG
AAAATCGCATTACAAGGGCACAACGGCTATTTCATTACTATTAATGACGA
AGGAGACTTCAAAGCTCTCAGTCGAACCGCCaaagataaagaaattttcG
TCTTGAGATCAAACGTTTCACGAAACAAAAAGAAGAAGACGTtaaacgaa
gaagaagaagcagGTGACGTACGTCATTTCGAAATCAATTACGTTAAACA
GTTCCAAAGCTTCAAAAATAATAAACTTAAACTACACGAGGGACCGTCCT
CGTCATTAGAGAAAGCACGAAATAAAGGGAAACTTCACGAAGCAATGCTG
GATCGAAGGGAGAAAATGAAAGCGGATCGATACAAGAAGCTTGAAGAAGA
CCTAAGAAAAGACAACCGAAGGAAACACAAATAGACATACAAACGAAGGA
TGGGAAAGAAAGGATTGGCATCTGGCgaaggaaagaaaaagaagaagaag
gaacAAGCACCtcaagatgaagaagaaaatgaacaaCAAGAAGAACAAAA
ACCAACGTTAGAAGACCTCGAAAAAGACATCGCTCTATTGAGGGAAAAAG
GCAGAGAAGATCCGGAGAATGTGGATTTCGTCCAAGAATTACGAAAGATT
CAAGATCAAATGGCCGACATCATGGGTAAAGACAAACGCCCGATGACCGC
CAAACCGGGCGAAGAAGAAGAGAgtgaggaagaagaagaagAGGAGGAAG
AGGATCCTGACAAAGAAGTAAAAGACTTGATCAACAAACGTCTGACGTCA
TGTATGTTACTGGCTCTCTCTTTCGAAAGTGAAGACTCCTATCCTGAAGA
TTTTTACGAAAAACTCAAAGAATCTGCAAAACTCGACGAAGTCACTGAGC
CCATCACCAATGAAGAACGCAAAATTCTCAATAATTTGTTGAAAGAGAAA
AAACCTGAAGCAAAGAAACGAGTAAAACGTGCTGGTAAAAATAAAGACAC
GGCGAAGTCACCCAAGAAGTAATTTTCGTGTTTGTGTTTTTTCGACCGAg
accaaagtttttgaaattttatcaatAATGGATCACCGTTGATACGTCTA
AGCTAGGAAGAATGAAACATTTGATTTGACTGGAATTGAGAGATTCTTGA
TAGAAAAGCTAAAGAATTGTAAATTTAGTATTGCTGACAATAACGCACAA
TTATATTTTCCTTTGTAAATACACTTTTGTTCCAATAGTATCGAAAAACC
TACACATTTTTGCCCTTGT
Run BLAST on NCBI

protein sequence of TCONS_00055929-protein

>TCONS_00055929-protein ID=TCONS_00055929-protein|Name=TCONS_00055929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSEYGQVKLGKLKLKGEGKSKKKSKKNKRKHDEEGGESSSSTKAWNEETK
KYHGWWPLKTFEDLGCGIVAVQTSFKNSYIFAVDNGTLRLGSEHDDHLEA
IPMEEEIFTLIKISENKIAFKSGYGKYVSVNARGDVMARSEAVGPQEQIE
VVIENEKIALQGHNGYFITINDEGDFKALSRTAKDKEIFVLRSNVSRNKK
KKTLNEEEEAGDVRHFEINYVKQFQSFKNNKLKLHEGPSSSLEKARNKGK
LHEAMLDRREKMKADRYKKLEEDLRKDNRRKHK
Run BLAST on NCBI

transcript from alignment at scaffold_266:202341..219171+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055929 ID=TCONS_00055929|Name=TCONS_00055929|organism=Clytia hemisphaerica|type=transcript|length=16831bp|location=Sequence derived from alignment at scaffold_266:202341..219171+ (Clytia hemisphaerica)
ggcgatggctcaagggatagagcgctggcttccgaatccgaaggtctttc
tttggtggtggttcgaatcccactcggtgcgaaaattagacNNctcagaa
actcagacagtcagaaaagagaaagacggGATCAGAGATAAGGATCACAT
TTCGGAGGTTTGTATCTTACGTTTTCCAAAGTCGAAAAGTCAAAGTTACC
AGATTACATTCCAATATTCCACTTTATAAAGGGTATTCTTTTTCGATATA
ATTCATTGACTGGCCttttttcattacttttgatcaCATATGCATTTTCG
AATTACACCAGAATACTAATTGGGAATATGTGGGGTTTTTTGTACCCACA
AGCAGttgtcagtcaggcacatcctggcaaatgaacggggtgagcatttg
catggggtattcatCACCCAGTGTAAAATGAGATAgcacgtctcaggcta
aaagcgtgaaaatgaataaaaatgaacttcacactgaaaaagggaaaaaa
ggaagaaaactgggaactttattttttcgttaaaagtttcttcaatcttt
cgaagacaaaattgacccatggaaaaacaagccgtatatgtataaaagtt
gcgaagcgatccagagcgtccctcaattcgcaagttgcaagcaaaacatt
ttagACACACAAACACTGTATATTCAACATCATTTTTGCAGTTTTCCTTT
ACATTCGCGAATATCCtatcatttgcaaattttttatagtccctctctat
aaagcttcaaccgttctatttttcattttctaaaataaatagcaaaaagt
ttaaagaaacaacaaaataagaagtaagatgaaaacactaacAAACTCGG
GGCATTttgaatttataaaataaaaacaaactgtacccttataatcataa
aggttggtgagtccagtcaaaacacagatttgatctgtagcgtcacgctt
cacctttacaaaaaggaggatatcataaaatgaaccaaggaaaatttcat
aatttgaaaaaaaagagtcATTTTGCATATAACTAATAATGTTAAATAAG
GATATAATTTCCAACAAATTGCAAGgagggaaaaaaatcttttgggaaac
atttttgtaatctgaaagaatgcccAAAGGGAAAAAAAACGTATGCGGAA
GGAAACTTCAAGgcgacaacaaaagttttccatatgAGACACACgtgtgc
taggtgcggcgcctagaagtttaacgcggcctcttagcgcctagagcgca
TGCTTGCAATAAACAATAAGGACGGGGAAACCATGTCGACTAAGcgcaca
aattatttttatcacgtgacttgaagcgtaattgcctaataaagttgtaa
aattttaacgaTGGatacgagaaagttacgaggaagtttggaTGCGTTTC
Atgtgttgtgtaaaattgcttataatttggctgctttttttttaattgaa
tggATTGCAATgcttactgaacttctagtttgatggatgaacttgtttga
taagaatgaggaccctgccgacgcaccggacttaacgaacactgGACCCC
GAAAGTCCGGTgtataatgataattttttttaccactggacaatctctac
atcggacttaaggaagtcagATGTCCGGTGTCAGAgttggatattttttt
ccaccggacaatcaaaacaccggacctGACCAGTCCGGTGGGTCCGgcgt
ttcttaattttttgtttcataaatgtccggcgtccaaaattccctgtatg
caacaccggactgacaccggacttattgcgtcagGTGTAACGAAAGGTTA
CCTTTTGCCACCAGACAAATACACAGGACAGTTCGGTGCGTCGGCAggtg
ataccaagaatttcaatcTTAATCATAACCTGGCAGCTCAAAATATGGCA
ATAATGGGTATGTTTCTAACGGGGCATCAGAGAACGCCATAGAAATAAAT
AAGTGTTTCATCACAATTTTAACTGGATCATTTTCAGTACTTTGACAAAC
AAACTTCCGAAAGGCATCACTGAATATAATACAATGCTTGaataacagaa
ttgaaaaaacacACATTTCGACCAAAATTGGTAAGCCCTGTTGGACAAAT
TATGTCTGGAGAATCTGACATATATTTTActaaaataatcaattttgcaG
TACAGTAAACACGGCtagcaaaaaataattaattcggTTGAATGGCAAAC
AAAAGTTGCTTCAATATACGGTATCTTTTAAACAGAAGGGCAAGCAAGGA
GGATATACTCGAAGACCAAAACCCAAACAATAACCAAGTACAATAACAGG
CCAGTGCCTTCTTTCTTTCAGTTCTTTGCTGTcgatttgattgaaatgaa
aGTCGAAACCAAACCAACAACCAAAAAAGAACGATGCCAATCAAGGATCG
AAGCCAAGAAAAACAGGACAAATTATAGTAAATTGTAATGATGATAACAG
AAAGTAATGACTCAATAAAAATTCAANNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAGCGAACCGAAAGAG
TTCAGCGAACTAAAAGAGCGAATATCATGAAAAAAGAGCGCACAAAAAGA
GCACTTATGGCAGCTATGGCGTTCCATACTTTACACTTTGTACTTCCGTC
CGttttgtttggtttgggaacgtgAACTTTAccgatgtctaaacttttca
atatatctccagaagtaccgtaacttggtctaatgtcgacatcccttctc
taattccgacaccctttttcagcttttatcagctgaaattgatagaaagg
ttgaatgtgtttttctttgattaatggtcagagaggaataattctttttc
aatcagtgattcaagctttcatattattcctgtctctaaagtaAAGGAGG
GTGTCCGAAGGTAGCTCAAGGTAgacaagggatgtcgatattagaccaac
ttacagtcaggcacatcctggcaaatgaacggggtgagcatttgcatggg
gtattcgtcacccagtgtaaatgagataggacgtctcaggctaaaagcgt
gaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNtttcttcaatcttcgaagacaaaattgaccc
atggaaaaaaaatttcatctatgcagttctttgaaatgaagcaaaatatt
tccaacccggttcaattaaacttggtattcggcgctattacgtcactttc
gttttcaaccccgttcatttgccaatggtcgcaagtgaaaaataccccgt
tcatttgccaggattttttgaaatgctgTAAAAAATTCCAAGTTCCTAAA
TacttttactatgttctgttaaaaaatcataaccatcagtgaaATACTCA
TTCATCTATATATTTAAGATCGAAGACAAAAATGTGCAAAGAAAAACAAG
CCTTGAGCACAAAAGATACGGCTAGTTCAAAAcgcaggttcaggtttcag
ggttAAAACGGAATAATTGCCAGACTAGATATATCATTTCGACTTGAAGT
TTGCAGaccagataaaaaaaaattgttatttatttttctcttttctgtgt
atgttaaatttttttttctaacatGTATATAGATTTGTTCTGTATATATT
TCTGGTATACCTCTTGTGGGTAATAAAATAGAAAGATTAATATAAATACT
CATTGTgagtcatttttcttttaacaaaTATTTGCCTTAATTGcttattt
tattttcccattGTTGTTGATGTCTCTCGACTggatatatataattttta
taagaatacaacgTTTGAACGGAGAGAATTgtgcattttttaaaacaaat
ttagaaCCTTCAGCTTTGAATAGGAAGActtgaaagtttttaaaagatta
taTTTGTTCCTGGGATACGCCGGGATACACTCTTCTTTCATTATAAGCAT
ATTCAAGCCTAAATTTAATGGGATTCTATCTAGCTCAGATTCTTACTCGC
TCGAAAGTAGACGGTTCTCATAGCCGAAAATGCTTTGGCTGATTAAGCTT
GTGCGTTTTGATCGGCTAATTTTTGTAATTGTCAATTTGGTGGCaaattc
aaatctttcaaagAAACCATCATACCATTTTATTCTCATATGAGCTTTGT
GAAATGGGAAAGTTATGGATCCAGGTTACTTCAATTGGGATGtttgaaat
aaatgtatttttgttTAGTTTGCAAGGCAACTCTCAGTAACAAGTAAAAT
AACtcaaagaatcaaatcaattaacttgtgcattttttataagaacggcT
CTGCAGGAATTTATAAAAAGGAAGAGACGAACGACATGTAATTTTACAtg
taaaagtttctttttattaaaaatataaaaacctGTTCATAAATAGATAT
GTAAAAACTCCTAAACAATATAAGCAAAATATAACTCTTTCGTATTAAAA
TGCgaacaaaaaacaaataaagtAAGTATGTTGCCCGACACTTAAATTAA
TTTTGGGCAATTTTTTTGAATACCGTACTCTCACCCTAACGGActcgaaa
aaattaaaactagaaTGGCTCGTTCAATTATATTCAAATATATTTGTGGc
tatttcattttcatattcaaaaGTTATGTAATTAGATTATGTAATCTTTT
CTCGCTATTGGTTTTGAATAGAAACGAGAAAACAAACGCACCGTCTGTAA
AATGAATATTAAGTCAGTAAATTGAACacgtttcaaaataaaaacagaca
TTTTACTTTGTATGATAATTAAATGACTACTAANNNNNNNNNNNNNNNNN
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ttcgttttcaaccccgttcatttgccaatggtcgcaagtgaaaaataccc
cgttcatttgccaggattttttgaaatgctgTAAAAAATTCCAAGTTCCT
AAATacttttactatgttctgttaaaaaatcataaccatcagtgaaATAC
TCATTCATCTATATATTTAAGATCGAAGACAAAAATGTGCAAAGAAAAAC
AAGCCTTGAGCACAAAAGATACGGCTAGTTCAAAAcgcaggttcaggttt
cagggttAAAACGGAATAATTGCCAGACTAGATATATCATTTCGACTTGA
AGTTTGCAGaccagataaaaaaaattgttatttatttttctcttttctgt
gtatgttaaatttttttttctaacatGTATATAGATTTGTTCTGTATATA
TTTCTGGTATACCTCTTGTGGGTAATAAAATAGAAAGATTAATATAAATA
CTCATTGTgagtcatttttcttttaacaaaTATTTGCCTTAATTGcttat
tttattttcccattGTGGTTGATGTCTCTCGACTGGATATACTTTTTATA
AGAGTACAACGTTTGAACGGAGAGAATTGtgtatcttttttataaaaatt
tcacACTTTCGCACGTGTATACAGAAAATTCGAATAATCAAATTGATGGC
TCACGTGGctatttcattttcatattcaaaaGTTATGTAATTAGATTATG
TAATCTTTTCTCGCTATTCGTTTTGAAATGAGAAAACAAAACGCACCGTC
TGTAAAATGAATATTAAGTCAGTAAATTGAATgcgtttcaaaataaaaac
aggcATTTTACTTTGTATGATCATTCAATGACTACTAACAATTATAGAAT
AATTTATATATTGTCAAAACCGCAAAGCTCCACTCTAATCGTtgggatat
tttatttttgaaatttccatcaaaaaagatttaacctgtaacctgaacct
gtaacctgaaacctgaacctgcgtttcgaacttgccgcaaaaaatgcttt
tgtaattaacacttttttccaccgttcatttgttcttaaattgttcttat
gttttggcgattttgagccttattgATCTTGTaacattgttcttatatta
aaaaagtgtaattttaGGATTCGGATCTATTTTAATTATAAGGTCTGTAA
ACTTCAGCTGTAACTAATTGTCAATAACCAGATTCTGGCCTGTCTCGGTG
GCACAATCAGTTAGGAGGTGTGTTGGGTTTATAAACCAAGAAGGTTGCTT
GCGTATTGGCCATTTGGTATGGCTCTTTAAAGGGCGCTTTGATCTTGAGG
TGCGCGAGTCTCATGCTCAATGGGTAACATACCTTGTATAATTCTGAtat
agcaactatctggtccAAAAATTAGTTAGAGTGATTTTTTAAGCAGGATA
CTCAGAAGGTTTTACATATTAACATTTAAACAACCAGATACCTATCACCG
AATAGTTGTTTAGGAGAAAGCAACAgtagtcttttgaataactaataaCT
CCAGCATAATTTAATGATAACATTGtattattgatttgtcttttaaaACA
AAGCTGTTACCTAGGGACAAGATAAATTATCCCGTTTGTAccggctgagg
gaaagtaatgtatgctGGAGTAATGAGTTATTCAAAAGAGTGTCGCGTTC
TTCCAAACAACTATTAGACAAGATATGCCAGTATCACACAAAGTTACGGT
AACTGTACTGTAAGTAGCCATCATTATAACCATTAGCTTTTTTTTGTATT
AACTGATATTTAATGTAAGCGCCTCGCTACTATTTGGTGGTCAAAATAGC
AACAGATCTGCtttattcttaaaatgttcaatCTTTTTTTGGTGTGTTCA
TAATTCTGCCATCCGCAAATGGaaagtttccaattttttgcacaattgtC
ATATTTGGTATACCAAATCTATTCGTGAATGTGAATCATTGGAGAGAACC
tacacttttaaattttttttcctagttatgaattttttcttttgctaatc
aggatgTCATGATGtcatagacctgagaaatacacttctataaataaata
aaaaaaaagatagaaaaaataaaaaaatgttaaatgatTGAAAACTGCAG
CATCAAATCAATGATAAGAAAAATATTAGTGCAATTTTACATAATTTGTT
ACTCAATAAACTGTTGCATTATTTTAAACAAATAAAGACNaaaaaaaaag
ataaaaaaaataaaaaaatgttaaatgatTAAAAACTGCAGCATCAAATC
AATGATAAGAAAAATATTAGTGCAATTTTACATAATTTGTTACTCAATAA
ACTGTTGCATTATTTTAAACAGATAAAGACACATTACAGTAATCATAatt
tttatcataattatcaatTATTCAATATGACATCCTGATTAGCacatgag
atttttttctagtCTTTGAAATAATATTATTACCTTACTCTTAAGTGCCA
GTTAAACAGGGGGGTTCGATTAaacagggggttggaaaattttcgaaatt
ttaataaacagggggacCTAAGGGGTTCGagattgtacttctgaaaaccc
aaaaaataaggtaaatataggctaaaatcaggctttttggagcaaaataa
ggcgACTTCTTCTTGctaaatgaaaatattcttaaaaattaataaacggg
gggggtcctaataaggtctggggggttggaaaattttcgaataaTATGCa
tgttcaatttttaaatttttaaatatgtttCTGAACTAATATGACCAATG
AAATTGAGCCATATGTTATGAAAACAATTTCAGGAcgggattttttcttt
ttactttaagAAACTTTTACATGGAAACCTTTTTGCTGAAGAACAAATCT
GCAAAATGATGCTAAATTCACTTTTGCCTAGGAATCTCAACACAATATAT
AAATAATTTCTATGAAGGATGCAATTTTCAATGTCATTCATTATGATAAC
TCCCATCAAATCAAACAATACCACGAAATCTcccattgtatatttttata
tgtTTAGATGTCAGAATATGGGCAGGTGAAACttggaaaattgaaattga
aaggagaagggaaaagtaaaaagaaaagtaagaaaaataaacgaaaaCAT
GATGAAGAAGGAGGCGAATCTTCATCAAGTACGAAGGCTTGGAATGAGGA
GACCAAAAAGTATCATGGCTGGTGGCCCTTAAAGACTTTTGAGGATCTTG
GTTGTGGTATTGTAGCTGTACAGACAAGTTTCAAGAACTCGTATATTTTT
GCAGTAGACAATGGAACTTTGAGATTAGGATCTGAGCATGATGATCATTT
AGAAGCCATACCAATGGAAGAAGAAATCTTCACTTTGATCAAAATCTCTG
AAAATAAAATTGCCTTCAAATCAGGATAtggtaattattattattttttt
ttttgctgacgtcagggAGGCAATTTTTTGAAGGAGGAGCTGTTTTGATT
ATAGTGACAACTAAAAGATATAAGTAAACGGATACAGGTCTTGAGAATTT
CGGTTGGTAATAGGTCATTGCAAGCCTGTTGTTAGATCTTCTGAAGAAAA
GGATTTGAATTGTTTATAATTATTAGGATTATCGGTAAAATAaataggtt
ttatttttatcattctatTGTCTAAGTTGAATTTTTGATTGTTACTGTGC
ATTTATATATTTTAGCTAAGTGTGAATTATCCACATGGACCATGAATATT
TCTTCcaaattcaaccaaaatttttaCGAGATCTTATCTTTAATGTTCTT
TAGTTGTgatttattttctgtttttgtttaatTTGGGTGTATGGATGATT
GCTGTGACAAATTCAACCTTTGGGAAGTTTGATGTctaaaatatgtgtct
gatggccgaattttcttataatcaatattttaaaatgatGTGCTTGGACT
TACTTTTCCAGGTAAATACGTATCAGTGAACGCTCGAGGGGATGTTATGG
CTCGTTCAGAAGCAGTTGGACCTCAAGAACAAATAGAGGTTGTGATAGAG
AATGAGAAAATCGCATTACAAGGGCACAACGGCTATTTCATTACTATTAA
TGACGAAGGAGACTTCAAAGCTCTCAGTCGAACCGCCaaagataaagaaa
ttttcGTCTTGAGATCAAACGTTTCACGAAAGTACGGGTttccttatttt
tactttttttttaattctaaagAGTTTGTTATTATCCTTGAACGGCTTTG
TTGCTTGCTACAATAGTATAATCTTGTTTTACGAGAGCTTATCTTTAATG
TTCTTTAACCATcatttattttctgtttttgtttaatTTGGGAGTATGGA
TGATTGCTGTGACGAATTCACTAGCTACCTGTTAGTTATATTAGGGAAAA
GCTGGCGATCTTGTTGTTTCTAACTATCTCTACATGCGAGactttgggac
aagctggagtttttacaagctcttatttgatttggttggttgttaagatg
taataaaagaatcttattactttttctaaagaacgcgtcatctctatcac
tttaaatgaccaattagtgaagtatcttgtaaaaactccaaggcatctcg
aGACTTTACCGCAAACTAACGCcaacaaactttctttcctatacaaacat
ttttgattaatttctttaactcgaacctctataactcgaatgtctcatta
tttttttattttatttattttatagcaatatatttcgcaggtctattgac
ctctatgaccTCTTTGACCtcattaactcgaacaagttttatggtccctc
aGTTAACAGCGCCTTATAAACTCAATTTTCTTAATTTGTATTCACCGTGC
GTGCTCGAGTTATGACGAGTAATGAGACTTCACtgtatttcatttttgtt
tcaGCAAAAAGAAGAAGACGTtaaacgaagaagaagaagcagGTGACGTA
CGTCATTTCGAAATCAATTACGTTAAACAGTTCCAAAGCTTCAAAAATAA
TAAACTTAAACTACACGAGGGACCGTCCTCGTCATTAGAGAAAGCACGAA
ATAAAGGGAAACTTCACGAAGCAATGCTGGATCGAAGGGAGAAAATGAAA
GCGGATCGGTATTGCAAATAATTTGTGGATGtggatttgaaatattttct
attgCCGATATGAGAGACAGTTATTTCAGAGTGAACCTTGTGCTTCGAAT
ACTCTCGGTGGAGACATTAATGTTGATCTTGGCATTCGCCAGCCGTCTTT
TGATTCAAATGATCAAAGTGTGTTGCTGATAtgaacttttttaaagaaat
tcagCATGGCTGTGACAAGTCTGCAGAGAGTCTCAATAAAAGAACTTTTT
TATATGGTTTTGTGTTATGAATTATGTAGCTAAAACATACTTTTCAACCT
TTCTAAGACCAATGAGATCAAATTTTAGGCTCTTAAAATATATTTAGTAG
CAATAATTTATTGAAACGAAATCCAGAATCGAAATTATTTCTTTCGTGTG
CACTTAGTTTGATTACCATCATTTGCTCTTTCAATAGCGTGATAATACTG
ATGTCTTGTTCATAAAATCatgctcaattaaataaaaacaaaatcaaatt
aaatcGAACTGAATTATTtaaatgcattttttgaaagtttcataattttg
aaaatatttacttGACATTTTGTggttatttattttaaaaaatcatgATT
TATTTGACATCTAAacgattagctatcgattttGTCACCATATCAATGTA
AGAAACAAATTTTTCGGCTACCGTATTTTTCTACTCACGCCATTTTTACA
GTTCCTATGGTAACTTTGAATTCACGCATGGAAAGGTTATTGATATATTG
AAACCACTTGAATGGATCTATTGAAATTCATCAATTCTATTGATGACGTT
TCAAATGAAGATTCACTTTCAATCTCACTATGACGATGAAACGAATGAAA
CTAACAAACCCCTAGGAACataatatttttctgttttttcaaaaatcgaa
agaGTAAAAATTAAGCTTAGAAAACTATTTTGTTCAGTTGAACTTTTTCT
TATACTCTAGTAAGACGTCATTTTGCAAGGAGCTTCAAGAAAAAAGGTGA
ACTTCATTTTTGCAAAGGCAACATATTTTAAAACCTTTTCGACTTTTAAT
ACAATAAACAGTAATCAGACAAAGTCAAGTCGTTATCTAATGTCTTATTT
ACTAGAAATTTAATTTCTCATTCGTTATTTTTCACAAGATACAAGAAGCT
TGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAAATAGACATACA
AACGAAGGATGGGAAAGAAAGGATTGGCATCTGGCgaaggaaagaaaaag
aagaagaaggaacAAGCACCtcaagatgaagaagaaaatgaacaaCAAGA
AGAACAAAAACCAACGTTAGAAGACCTCGAAAAAGACATCGCTCTATTGA
GGGAAAAAGGTAAGAAAACATTAATAAGAGATGGTAGTATTAGTAGTAGA
TACAGAAAACATTTTCCACTTTCATCTAGTGATCAttgtaaaaatttatt
tgattgaATTCTTGAAATTAATACTCTAGCTAAATGATGATGAATCCTAA
AATAATTTTCTGCATTATTTTATGAAATATGAAtgttttttatctgaaaa
ttgaATCTCTttctatttcaatgaatttttcAGGCAGAGAAGATCCGGAG
AATGTGGATTTCGTCCAAGAATTACGAAAGATTCAAGATCAAATGGCCGA
CATCATGGGTAAAGACAAACGCCCGATGACCGCCAAACCGGGCGAAGAAG
AAGAGAgtgaggaagaagaagaaggtgAGAAAGGAAGATTGGATTTTTTA
TGGGGAGCGGAAGATCGGATTTCCGATGAAGGGAAAAGGAAAGCACAATA
GacaaccctgtctcagtgacaAACATTTTGCTGTTTAAGGGCAGAATGAA
AAAAGCTAATACCAATGTGTGTTGTCTAATTTTAACTGGCTGGGTTTCAT
ATCTTATTACTTCATGTCTCTACCAGTGAGTAGGATAGTGTAGATTTCCA
ATTTAGGATGTTTTTCTCATCGGGGACGATTTTACCAGCGGGAGAGATCC
ATACGGGGATGTAGATCAATAAGTGGATAAACCGAATTAAACGAGTGTAA
CAAAAAGGAAGCAAAGCTGACTATAAGAAATATTAAGGTTTTTTATCCAC
AAAGGTTTGCTGGGAGGGGGGTCGAAGTGATGCAGGATCGTTCGAGGAAA
AGGTTTTACCGAAACCACTAcgatcaaagtcataatattttagaagaaag
ggaaattcccaagaaatcttacaaccacaaacgatttgaaaGCGCTCTAA
ATTAAGTTGGATGGATAAGAGCTCTAACTCTGagttaacgctagacttaa
ggtCCAAGAATGGTCCGATGGGGCTCAGAATACAGCCTGAAAGTCTATAA
ACCACTCCCGGGTTGAAATATtccaataaatttatcaattagctaGCCTC
AAAGCGACTTtcttgcccgaactttaaattgctaaaaacgaggaattaac
caaaattctcaatatattttgaccaagaTTGTAGATGGTTGttaatattt
ataaaatttaacattttattttataaaatttaacattttattttataaaa
aaatttaacattttattttataaaatttaacattttatttcattttttta
cagAGGAGGAAGAGGATCCTGACAAAGAAGTAAAAGACTTGATCAACAAA
CGTCTGACGTCATGTATGTTACTGGCTCTCTCTTTCGAAAGTGAAGACTC
CTATCCTGAAGATTTTTACGAAAAACTCAAAGAATCTGCAAAACTCGACG
AAGTCACTGAGCCCATCACCAATGAAGAACGCAAAATTCTCAATAATTTG
TTGAAAGAGAAAAAACCTGAAGCAAAGAAACGAGTAAAACGTGCTGGTAA
AAATAAAGACACGGCGAAGTCACCCAAGAAGTAATTTTCGTGTTTGTGTT
TTTTCGACCGAgaccaaagtttttgaaattttatcaatAATGGATCACCG
TTGATACGTCTAAGCTAGGAAGAATGAAACATTTGATTTGACTGGAATTG
AGAGATTCTTGATAGAAAAGCTAAAGAATTGTAAATTTAGTATTGCTGAC
AATAACGCACAATTATATTTTCCTTTGTAAATACACTTTTGTTCCAATAG
TATCGAAAAACCTACACATTTTTGCCCTTGT

Coding sequence (CDS) from alignment at scaffold_266:202341..219171+

>TCONS_00055929 ID=TCONS_00055929|Name=TCONS_00055929|organism=Clytia hemisphaerica|type=CDS|length=3408bp|location=Sequence derived from alignment at scaffold_266:202341..219171+ (Clytia hemisphaerica)
ATGTCAGAATATGGGCAGGTGAAACttggaaaattgaaattgaaaggaga
agggaaaagtaaaaagaaaagtaagaaaaataaacgaaaaCATGATGAAG
AAGGAGGCGAATCTTCATCAAGTACGAAGGCTTGGAATGAGGAGACCAAA
AAGTATCATGGCTGGTGGCCCTTAAAGACTTTTGAGGATCTTGGTTGTGG
TATTGTAGCTGTACAGACAAGTTTCAAGAACTCGTATATTTTTGCAGTAG
ACAATGGAACTTTGAGATTAGGATCTGAGCATGATGATCATTTAGAAGCC
ATACCAATGGAAGAAGAAATCTTCACTTTGATCAAAATCTCTGAAAATAA
AATTGCCTTCAAATCAGGATAtgGTAAATACGTATCAGTGAACGCTCGAG
GGGATGTTATGGCTCGTTCAGAAGCAGTTGGACCTCAAGAACAAATAGAG
GTTGTGATAGAGAATGAGAAAATCGCATTACAAGGGCACAACGGCTATTT
CATTACTATTAATGACGAAGGAGACTTCAAAGCTCTCAGTCGAACCGCCa
aagataaagaaattttcGTCTTGAGATCAAACGTTTCACGAAACAAAAAG
AAGAAGACGTtaaacgaagaagaagaagcagGTGACGTACGTCATTTCGA
AATCAATTACGTTAAACAGTTCCAAAGCTTCAAAAATAATAAACTTAAAC
TACACGAGGGACCGTCCTCGTCATTAGAGAAAGCACGAAATAAAGGGAAA
CTTCACGAAGCAATGCTGGATCGAAGGGAGAAAATGAAAGCGGATCGATA
CAAGAAGCTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAAAT
AGATGTCAGAATATGGGCAGGTGAAACttggaaaattgaaattgaaagga
gaagggaaaagtaaaaagaaaagtaagaaaaataaacgaaaaCATGATGA
AGAAGGAGGCGAATCTTCATCAAGTACGAAGGCTTGGAATGAGGAGACCA
AAAAGTATCATGGCTGGTGGCCCTTAAAGACTTTTGAGGATCTTGGTTGT
GGTATTGTAGCTGTACAGACAAGTTTCAAGAACTCGTATATTTTTGCAGT
AGACAATGGAACTTTGAGATTAGGATCTGAGCATGATGATCATTTAGAAG
CCATACCAATGGAAGAAGAAATCTTCACTTTGATCAAAATCTCTGAAAAT
AAAATTGCCTTCAAATCAGGATAtgGTAAATACGTATCAGTGAACGCTCG
AGGGGATGTTATGGCTCGTTCAGAAGCAGTTGGACCTCAAGAACAAATAG
AGGTTGTGATAGAGAATGAGAAAATCGCATTACAAGGGCACAACGGCTAT
TTCATTACTATTAATGACGAAGGAGACTTCAAAGCTCTCAGTCGAACCGC
CaaagataaagaaattttcGTCTTGAGATCAAACGTTTCACGAAACAAAA
AGAAGAAGACGTtaaacgaagaagaagaagcagGTGACGTACGTCATTTC
GAAATCAATTACGTTAAACAGTTCCAAAGCTTCAAAAATAATAAACTTAA
ACTACACGAGGGACCGTCCTCGTCATTAGAGAAAGCACGAAATAAAGGGA
AACTTCACGAAGCAATGCTGGATCGAAGGGAGAAAATGAAAGCGGATCGA
TACAAGAAGCTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAA
ATAGATGTCAGAATATGGGCAGGTGAAACttggaaaattgaaattgaaag
gagaagggaaaagtaaaaagaaaagtaagaaaaataaacgaaaaCATGAT
GAAGAAGGAGGCGAATCTTCATCAAGTACGAAGGCTTGGAATGAGGAGAC
CAAAAAGTATCATGGCTGGTGGCCCTTAAAGACTTTTGAGGATCTTGGTT
GTGGTATTGTAGCTGTACAGACAAGTTTCAAGAACTCGTATATTTTTGCA
GTAGACAATGGAACTTTGAGATTAGGATCTGAGCATGATGATCATTTAGA
AGCCATACCAATGGAAGAAGAAATCTTCACTTTGATCAAAATCTCTGAAA
ATAAAATTGCCTTCAAATCAGGATAtgGTAAATACGTATCAGTGAACGCT
CGAGGGGATGTTATGGCTCGTTCAGAAGCAGTTGGACCTCAAGAACAAAT
AGAGGTTGTGATAGAGAATGAGAAAATCGCATTACAAGGGCACAACGGCT
ATTTCATTACTATTAATGACGAAGGAGACTTCAAAGCTCTCAGTCGAACC
GCCaaagataaagaaattttcGTCTTGAGATCAAACGTTTCACGAAACAA
AAAGAAGAAGACGTtaaacgaagaagaagaagcagGTGACGTACGTCATT
TCGAAATCAATTACGTTAAACAGTTCCAAAGCTTCAAAAATAATAAACTT
AAACTACACGAGGGACCGTCCTCGTCATTAGAGAAAGCACGAAATAAAGG
GAAACTTCACGAAGCAATGCTGGATCGAAGGGAGAAAATGAAAGCGGATC
GATACAAGAAGCTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACAC
AAATAGATGTCAGAATATGGGCAGGTGAAACttggaaaattgaaattgaa
aggagaagggaaaagtaaaaagaaaagtaagaaaaataaacgaaaaCATG
ATGAAGAAGGAGGCGAATCTTCATCAAGTACGAAGGCTTGGAATGAGGAG
ACCAAAAAGTATCATGGCTGGTGGCCCTTAAAGACTTTTGAGGATCTTGG
TTGTGGTATTGTAGCTGTACAGACAAGTTTCAAGAACTCGTATATTTTTG
CAGTAGACAATGGAACTTTGAGATTAGGATCTGAGCATGATGATCATTTA
GAAGCCATACCAATGGAAGAAGAAATCTTCACTTTGATCAAAATCTCTGA
AAATAAAATTGCCTTCAAATCAGGATAtgGTAAATACGTATCAGTGAACG
CTCGAGGGGATGTTATGGCTCGTTCAGAAGCAGTTGGACCTCAAGAACAA
ATAGAGGTTGTGATAGAGAATGAGAAAATCGCATTACAAGGGCACAACGG
CTATTTCATTACTATTAATGACGAAGGAGACTTCAAAGCTCTCAGTCGAA
CCGCCaaagataaagaaattttcGTCTTGAGATCAAACGTTTCACGAAAC
AAAAAGAAGAAGACGTtaaacgaagaagaagaagcagGTGACGTACGTCA
TTTCGAAATCAATTACGTTAAACAGTTCCAAAGCTTCAAAAATAATAAAC
TTAAACTACACGAGGGACCGTCCTCGTCATTAGAGAAAGCACGAAATAAA
GGGAAACTTCACGAAGCAATGCTGGATCGAAGGGAGAAAATGAAAGCGGA
TCGATACAAGAAGCTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAAC
ACAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035216XLOC_035216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055929-exon-scaffold_266-1491911889:202341..202572TCONS_00055929-exon-scaffold_266-1491911889:202341..202572Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:202341..202572TCONS_00055929-exon-scaffold_266-1510915933:202341..202572Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:202341..202572TCONS_00055929-exon-scaffold_266-1575043694:202341..202572Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:213998..214370TCONS_00055929-exon-scaffold_266-1491911889:213998..214370Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:213998..214370TCONS_00055929-exon-scaffold_266-1510915933:213998..214370Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:213998..214370TCONS_00055929-exon-scaffold_266-1575043694:213998..214370Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:214902..215121TCONS_00055929-exon-scaffold_266-1491911889:214902..215121Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:214902..215121TCONS_00055929-exon-scaffold_266-1510915933:214902..215121Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:214902..215121TCONS_00055929-exon-scaffold_266-1575043694:214902..215121Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:215845..216048TCONS_00055929-exon-scaffold_266-1491911889:215845..216048Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:215845..216048TCONS_00055929-exon-scaffold_266-1510915933:215845..216048Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:215845..216048TCONS_00055929-exon-scaffold_266-1575043694:215845..216048Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:217179..217399TCONS_00055929-exon-scaffold_266-1491911889:217179..217399Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:217179..217399TCONS_00055929-exon-scaffold_266-1510915933:217179..217399Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:217179..217399TCONS_00055929-exon-scaffold_266-1575043694:217179..217399Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:217624..217764TCONS_00055929-exon-scaffold_266-1491911889:217624..217764Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:217624..217764TCONS_00055929-exon-scaffold_266-1510915933:217624..217764Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:217624..217764TCONS_00055929-exon-scaffold_266-1575043694:217624..217764Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1491911889:218644..219171TCONS_00055929-exon-scaffold_266-1491911889:218644..219171Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1510915933:218644..219171TCONS_00055929-exon-scaffold_266-1510915933:218644..219171Clytia hemisphaericaexon
TCONS_00055929-exon-scaffold_266-1575043694:218644..219171TCONS_00055929-exon-scaffold_266-1575043694:218644..219171Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055929-proteinTCONS_00055929-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:202341..219171 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43105	3.91365	2.41855	3.27594	2.1045	2.94112	11.9454	11.325	14.0196	8.62951	10.042	9.47732	5.24718	6.86734	3.21257	3.23587	5.56284	6.48819	3.86879	3.98774	4.72909	4.5106	3.53921	6.46328	13.349	15.1461	1.30043	0.494907	3.95009e-09	0.171565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010414FRG1
IPR013865DUF1754_euk
IPR008999Actin_cross-linking
Blast
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BLAST of TCONS_00055929 vs. Swiss-Prot (Human)
Match: FRG1 (Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.235e-52
Identity = 101/215 (46.98%), Postives = 144/215 (66.98%), Query Frame = 2 
Query:  395 WWPLKTFEDLGCGIVAVQTSFKNSYIFAVDNGTLRLGSEHDDHLEAIPMEEEIFTLIKISENKIAFKSGYGKYVSVNARGDVMARSEAVGPQEQIEVVIENEKIALQGHNGYFITINDEGDFKALSRTAKDKEIFVLRSNVSRXXXXXXXXXXXXAGDVRHFEINYVKQFQSFKNNKLKLHEGPSSSLEKARNKGKLHEAMLDRREKMKADRYKK 1039
            WW +  F ++  G +A++   K +YI A+DNG   LG+ H +  E  P   E FT +K+S+++IA KSGYGKY+ +N+ G V+ RS+A+GP+EQ E V +N K+AL   N  FI  N+ GD +A S+TA ++E+  +RS   R  KKK    EE+ G+V+  EINYVK+FQSF+++KLK+ +  S  L+KAR  G LHE +LDRR K+KADRY K
Sbjct:   47 WWTVTNFGEIS-GTIAIEMD-KGTYIHALDNGLFTLGAPHKEVDEG-PSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK 258
The following BLAST results are available for this feature:
BLAST of TCONS_00055929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRG13.235e-5246.98Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1[more]
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