TCONS_00055932 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055932
Unique Name	TCONS_00055932
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3480

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_266:287261..291743+
coding sequence from alignment at scaffold_266:287261..291743+

transcript sequence

>TCONS_00055932 ID=TCONS_00055932|Name=TCONS_00055932|organism=Clytia hemisphaerica|type=transcript|length=3480bp
GAGACCGACGATGGTGAAAACAACACGAAGAGCGACTTCAACAACACGAA
CACCAATTCAAGGGTACAAGTACCCGCCAAAGAAAACAACTCGaCTGCGA
GCGTAGCATTCCAACAAAAGGCGAAGATTGAAGACCAGATGAACAATGAG
AATTTGGAGCAATTGCAAAAGATCTTCGAAGACGCTGATGAGGATGGAGG
AGGTGGGTTGGATATAGAAGAATTCGGACAAGCTATGAAAATGGCGTTTG
GAAGTTCGGATGAGTTAGATGACGAACAACTACAATTGATGTTCATGAAA
GTTGACACAAATTGTGACGGTACGGTGGATTGGGAAGAATTTTGTTCCTA
TATGTTGTTAGAGAATCAACAAAAAGATAGTATGACCAGAGATGTTATCG
ATCTTCCCTTCCCAAATGCTGCAAGAGAAATAGCTAACCCGCATCATGAC
TCTCTCGCTAAAATCACGTATTTCCCAAGTCTTGGAGTCGCGCAACGTGC
GTCCAACGCCGTTGACAGTGAAGAACTGGATAACGGGAACGGGCGTTACA
TCTCGTGCAGTAAAGACGGTTTGTTCGTTTTCTGGAACCTGGACCTTCAG
ATTCAACGTACAATCAACTTGAATGACATGCAGACCAACGGTAGCAAATC
CAAACAAATCTGGGTTACCGACGTCGTTGCATTAGCGAACGTAAAAAAAG
TTGCCGTGGCTACAACAGAACGCGATATTACATTTTATGATTGTTCTGCT
AACAGTTTTGAGAAGCAATTTCTGTTGACAGGACTTCCACATTGTGTCTT
ATGCATGGATTACTGGTTCAACCCACAGAATATGAACGAAGGAGTTCTAG
TGACCGGTGACGCAGGAGGAAGCGTATCGTGCATGCAATTTACTCAAGCA
ACGGTCGGTTTATTTGATGTCAGTATTGGTAAACAGCACAATATGTCCAC
ATCCACTGTTCGCCGTATTCCGTTCCAAGAGTTATGTGTAGGAAGACACT
CCAGTGTCAACACCATTCTCTTCAGTGACTTACACGATGATTGGGTACGA
AAAGTCAAGTACATTCCCAACCTACAATGTTTCATTTCGTGTTCTAACAC
CGGTACGTCTTCATTATTCCTTGGTGatctacaaaataaaaagatcAAGT
CATCCTTCAAGATTCCCAAAGGTGTTTATTCCTTTGATTATGACAAAGAA
AATAACATCATTGTCACCGGAGGTCTGGATCGGTACATCCGACTCTGGAA
TCCATACGTCACTATCAAATCAACTTCAGTGTTGAAAGGACATAATTCTT
CAGTTATTCATATTGTCGCTTGTGCTGACCAAATCATCAGCTTTTCTAAG
gataaaatgattaaaatatGGGACACCAGAGATCATTGTTGTATACAAAC
CATACCAAGTAGGTTGACCGACTTTGGTGCACATCAGATCACCACTGTTT
ATTATAATCGCAAGTTACAAACATTGTTATTGGGGAGCTGCTCAATAGCG
GTGCTTGAGAAACGAAAGCCAGAGGAAGTGAATGTCTCATTGATCACAGA
GGAAGAACAACTTAGCCATCCAAAACCGCTTTGTGGTGCTCTGTATAATG
ACTTATTTAACCAAGTAGTGAGCGCGTGTCACGGATCTATCGTGAATGTG
TGGCATGTGGACACAGGAGAAAAAGCTATCATGTTCACCAATGCGCATAA
TGGTCACGAAATCACATCCATGACTTTCGATCCAACCAAACGTCGCTTAA
TTACCGGCTCACGAAATGGTTCCGTCAAGATTTGGAATTTCAACAATGGC
GCGTGTTTACATTCCATGAACGCTTTAGATGATAGTGAAGTGACAGGTAT
CGTCTGCTTGAAACAACGCATCGTAACTGTCGGCTGGAATCATAAGATTA
TGGTGTATCGTGACGTTAGAGGGGCGGAAGACGATCCGCCCAAAATGTGG
AATAACCTTCACAAAGATGATATTCTATCCGTTGATCATACCAAAGCTGG
CCTTATGGTAACCACCAGCTATGACGGACAAGTCTGTTGCTGGAACATCG
AGACGGCGCACGTCTTTTGTCAGATGAACGTCAATGACAAAAGGACCAGG
TCCAATCAAGGCGGAAAGATTGCTTGGAATAACCGTATTTTACCACGAAG
AGCCACCATCGATCTAAAGCCTGATGATATCAATAAACATTTATCAGTCG
ATAAAGTGATCTTCCTTCAGAACAGAGAACAGGACAAGAAAACAGCCACT
TTGTTGGTCAGTGTTGACGGAATCATTCAAGCATGGAGTGTTCAAGGTGG
TCTTCTGGGAAGATTTGATGCTACGGGCCGTCGTAATGATGAATCTATCT
TAGCGTTGAAAAGTGATAGCCTCAATCATATCCTGTTTACAGGTGATAGT
TCAGGCTACATCAAGATATGGGATATCAGTGATTATTGCattaaacaaca
acaaacaccTGTACAAACTAGAAGTCCTTCACCCTTAGACCAGTTCTCTA
GAAAAAAAGCTGGTAATTCGTTAGCAGGTCTTCTGAAACGATCAACCGTG
GATAGCTTTAATCGTATGACTTCTTCAAACACTAAATCTTCTAGCTCAAA
ATCTTCGAGTGACATCTTTGATTCGATTTGTAGCCCTCCTGAAACTTTAC
TTCAATTCAGGGGGCACGGTAAAAGCATTGTTTCTATTGACTACTGTGAG
AAAAAACAACTCATTGTCACTGCATCAACCGATTGCTATGTCCGATTATG
GACAATCAATGGTAAATACCTTGGTACATTCGGACAAAAACAACCCTGGG
ACTCACTCGAGAATTCAGTCAACTTGAAAAAAGCACGGCGCCTACCTCCT
GATCTTCAACGTATTGCATCCACTCAAACATTAAAGGTGGTGAACGGGTC
CGCACCACGCTGGAAACTAGCGAGaaatattttcactattttacaCATGG
GCAGACGGAACACAAAGTCCGCCGTCAAGGACGAGGACGTCACACAAATT
ATTACGAGCGAGACATCCGCTATCAATAGACACCAAATACTAGATATCCC
TATTCATGAAGTGCTGGGCAAAAATTACAAACCGAAACAACGACACCGTA
TGCCACCCATCATTAAACCAAAAATCAACAATTTGCAATGCGTCGCTTTC
TCTTCCTTACCGTTCAAAGAACTAGAACACATTGAAGAGCCCAAAATGCC
GCAAGTTTTGGTGCACGCCATGGCTGCTAggcaacagcaacaacaacaac
aaaacaatagaACGGTCGCATCTGCCATTAACGGTGATCAAAATCGAAAA
AGTCAGTATTCGAATAACCGCAAAGGAGGGACGTCGCCCATTAGACATAC
TGTCAATAATCGTTTGCTACCGGCTATCGCAATGAATAGGAACAAACCCA
ATTGATTTtatcaacaaaaatattctacttgtaattttcttttcaattat
tATAATAAACATATTTTAATCCTATACAAA

Run BLAST on NCBI

protein sequence of TCONS_00055932-protein

>TCONS_00055932-protein ID=TCONS_00055932-protein|Name=TCONS_00055932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1134bp
ETDDGENNTKSDFNNTNTNSRVQVPAKENNSTASVAFQQKAKIEDQMNNE
NLEQLQKIFEDADEDGGGGLDIEEFGQAMKMAFGSSDELDDEQLQLMFMK
VDTNCDGTVDWEEFCSYMLLENQQKDSMTRDVIDLPFPNAAREIANPHHD
SLAKITYFPSLGVAQRASNAVDSEELDNGNGRYISCSKDGLFVFWNLDLQ
IQRTINLNDMQTNGSKSKQIWVTDVVALANVKKVAVATTERDITFYDCSA
NSFEKQFLLTGLPHCVLCMDYWFNPQNMNEGVLVTGDAGGSVSCMQFTQA
TVGLFDVSIGKQHNMSTSTVRRIPFQELCVGRHSSVNTILFSDLHDDWVR
KVKYIPNLQCFISCSNTGTSSLFLGDLQNKKIKSSFKIPKGVYSFDYDKE
NNIIVTGGLDRYIRLWNPYVTIKSTSVLKGHNSSVIHIVACADQIISFSK
DKMIKIWDTRDHCCIQTIPSRLTDFGAHQITTVYYNRKLQTLLLGSCSIA
VLEKRKPEEVNVSLITEEEQLSHPKPLCGALYNDLFNQVVSACHGSIVNV
WHVDTGEKAIMFTNAHNGHEITSMTFDPTKRRLITGSRNGSVKIWNFNNG
ACLHSMNALDDSEVTGIVCLKQRIVTVGWNHKIMVYRDVRGAEDDPPKMW
NNLHKDDILSVDHTKAGLMVTTSYDGQVCCWNIETAHVFCQMNVNDKRTR
SNQGGKIAWNNRILPRRATIDLKPDDINKHLSVDKVIFLQNREQDKKTAT
LLVSVDGIIQAWSVQGGLLGRFDATGRRNDESILALKSDSLNHILFTGDS
SGYIKIWDISDYCIKQQQTPVQTRSPSPLDQFSRKKAGNSLAGLLKRSTV
DSFNRMTSSNTKSSSSKSSSDIFDSICSPPETLLQFRGHGKSIVSIDYCE
KKQLIVTASTDCYVRLWTINGKYLGTFGQKQPWDSLENSVNLKKARRLPP
DLQRIASTQTLKVVNGSAPRWKLARNIFTILHMGRRNTKSAVKDEDVTQI
ITSETSAINRHQILDIPIHEVLGKNYKPKQRHRMPPIIKPKINNLQCVAF
SSLPFKELEHIEEPKMPQVLVHAMAARQQQQQQQNNRTVASAINGDQNRK
SQYSNNRKGGTSPIRHTVNNRLLPAIAMNRNKPN

Run BLAST on NCBI

transcript from alignment at scaffold_266:287261..291743+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055932 ID=TCONS_00055932|Name=TCONS_00055932|organism=Clytia hemisphaerica|type=transcript|length=4483bp|location=Sequence derived from alignment at scaffold_266:287261..291743+ (Clytia hemisphaerica)
GAGACCGACGATGGTGAAAACAACACGAAGAGCGACTTCAACAACACGAA
CACCAATTCAAGGGTACAAGTACCCGCCAAAGAAAACAACTCGGTAAGAT
CTCTAAGGTTTCTAGCCCACACAAACCCCCTAAATAAACCTATTTTATCA
AGTCGGAATTTGAATTCAGCATCGTCTATATGAAAATATAGAGCAATATA
ATTTTACCAATACGAAAATAGTGTTCTTGGAAAAAATAATTACACAGGGC
AATGAGCTACCCAATCAGAAGTTCAGTTCAACAACCTATTATATAATGAT
CCATAATTTAGTTGTATCATAGAAAAAGTTCGTAAAAGCATCTGTCAAAT
ATGCTCGTAGCATCAAAAGATTTCAGACAGTAAATTTATAAAAGCTCTGG
TCGCTTTGAAAATAAACCTTAAATTTAATACGAATTGTTCCTTACCTTGC
TTGGTGTTAATTTGGTCCGAATCCAATATCGTCACGTATAAGTCTGAACA
AAATATAAGAATAAAAGCTAGTTTCATTATTCTTTTCATTTCGCAGACAA
ATCTCCAAGGTTgatttcatgtgaaaattcttgAGGTTTGAAAATCTCCA
AGTTAAAGGAGAACGAACCAATATCcagtttaaaatttaaattatttttt
cgaaagattattttgaaaatcctttcTCCTGTTTGACATGTACGTGAGTA
AGTCGAACATTCTTGGAGAGACCAGAACAGAAGATTTTGGATTGATACAC
AACAAGATGGGTTTCCCTTTTTATTTCTTGGTACAGAATGTTTATGATTA
TCGATGCAATAATAGTCTATTTCATGGTCGAAATAAATCTGGGGTAAACA
GAACTGCCACAACCTTCTTTGGCTGTCCTCCGACAAAGGTTCTTGGCGTT
TAACCAATCGGAAGCGGTTAAGGGAGCCTTCGTTATTCCCTCACTTTGCC
TTGGTTTCATTTGCCtgggatttcatttttttcatctatcATAACTGCAC
GACAATACATCCCCTTCCATTGTTCTAAACTGCAAGTGCTAGATTTTTCT
CACATTTCTACAGTAGACTTGTAtttctctttcttttattttctagaCTG
CGAGCGTAGCATTCCAACAAAAGGCGAAGATTGAAGACCAGATGAACAAT
GAGAATTTGGAGCAATTGCAAAAGATCTTCGAAGACGCTGATGAGGATGG
AGGAGGTGGGTTGGATATAGAAGAATTCGGACAAGCTATGAAAATGGCGT
TTGGAAGTTCGGATGAGTTAGATGACGAACAACTACAATTGATGTTCATG
AAAGTTGACACAAATTGTGACGGTACGGTGGATTGGGAAGAATTTTGTTC
CTATATGTTGTTAGAGAATCAACAAAAAGATAGTATGACCAGAGATGTTA
TCGATCTTCCCTTCCCAAATGCTGCAAGAGAAATAGCTAACCCGCATCAT
GACTCTCTCGCTAAAATCACGTATTTCCCAAGTCTTGGAGTCGCGCAACG
TGCGTCCAACGCCGTTGACAGTGAAGAACTGGATAACGGGAACGGGCGTT
ACATCTCGTGCAGTAAAGACGGTTTGTTCGTTTTCTGGAACCTGGACCTT
CAGATTCAACGTACAATCAACTTGAATGACATGCAGACCAACGGTAGCAA
ATCCAAACAAATCTGGGTTACCGACGTCGTTGCATTAGCGAACGTAAAAA
AAGTTGCCGTGGCTACAACAGAACGCGATATTACATTTTATGATTGTTCT
GCTAACAGTTTTGAGAAGCAATTTCTGTTGACAGGACTTCCACATTGTGT
CTTATGCATGGATTACTGGTTCAACCCACAGAATATGAACGAAGGAGTTC
TAGTGACCGGTGACGCAGGAGGAAGCGTATCGTGCATGCAATTTACTCAA
GCAACGGTCGGTTTATTTGATGTCAGTATTGGTAAACAGCACAATATGTC
CACATCCACTGTTCGCCGTATTCCGTTCCAAGAGTTATGTGTAGGAAGAC
ACTCCAGTGTCAACACCATTCTCTTCAGTGACTTACACGATGATTGGGTA
CGAAAAGTCAAGTACATTCCCAACCTACAATGTTTCATTTCGTGTTCTAA
CACCGGTACGTCTTCATTATTCCTTGGTGatctacaaaataaaaagatcA
AGTCATCCTTCAAGATTCCCAAAGGTGTTTATTCCTTTGATTATGACAAA
GAAAATAACATCATTGTCACCGGAGGTCTGGATCGGTACATCCGACTCTG
GAATCCATACGTCACTATCAAATCAACTTCAGTGTTGAAAGGACATAATT
CTTCAGTTATTCATATTGTCGCTTGTGCTGACCAAATCATCAGCTTTTCT
AAGgataaaatgattaaaatatGGGACACCAGAGATCATTGTTGTATACA
AACCATACCAAGTAGGTTGACCGACTTTGGTGCACATCAGATCACCACTG
TTTATTATAATCGCAAGTTACAAACATTGTTATTGGGGAGCTGCTCAATA
GCGGTGCTTGAGAAACGAAAGCCAGAGGAAGTGAATGTCTCATTGATCAC
AGAGGAAGAACAACTTAGCCATCCAAAACCGCTTTGTGGTGCTCTGTATA
ATGACTTATTTAACCAAGTAGTGAGCGCGTGTCACGGATCTATCGTGAAT
GTGTGGCATGTGGACACAGGAGAAAAAGCTATCATGTTCACCAATGCGCA
TAATGGTCACGAAATCACATCCATGACTTTCGATCCAACCAAACGTCGCT
TAATTACCGGCTCACGAAATGGTTCCGTCAAGATTTGGAATTTCAACAAT
GGCGCGTGTTTACATTCCATGAACGCTTTAGATGATAGTGAAGTGACAGG
TATCGTCTGCTTGAAACAACGCATCGTAACTGTCGGCTGGAATCATAAGA
TTATGGTGTATCGTGACGTTAGAGGGGCGGAAGACGATCCGCCCAAAATG
TGGAATAACCTTCACAAAGATGATATTCTATCCGTTGATCATACCAAAGC
TGGCCTTATGGTAACCACCAGCTATGACGGACAAGTCTGTTGCTGGAACA
TCGAGACGGCGCACGTCTTTTGTCAGATGAACGTCAATGACAAAAGGACC
AGGTCCAATCAAGGCGGAAAGATTGCTTGGAATAACCGTATTTTACCACG
AAGAGCCACCATCGATCTAAAGCCTGATGATATCAATAAACATTTATCAG
TCGATAAAGTGATCTTCCTTCAGAACAGAGAACAGGACAAGAAAACAGCC
ACTTTGTTGGTCAGTGTTGACGGAATCATTCAAGCATGGAGTGTTCAAGG
TGGTCTTCTGGGAAGATTTGATGCTACGGGCCGTCGTAATGATGAATCTA
TCTTAGCGTTGAAAAGTGATAGCCTCAATCATATCCTGTTTACAGGTGAT
AGTTCAGGCTACATCAAGATATGGGATATCAGTGATTATTGCattaaaca
acaacaaacaccTGTACAAACTAGAAGTCCTTCACCCTTAGACCAGTTCT
CTAGAAAAAAAGCTGGTAATTCGTTAGCAGGTCTTCTGAAACGATCAACC
GTGGATAGCTTTAATCGTATGACTTCTTCAAACACTAAATCTTCTAGCTC
AAAATCTTCGAGTGACATCTTTGATTCGATTTGTAGCCCTCCTGAAACTT
TACTTCAATTCAGGGGGCACGGTAAAAGCATTGTTTCTATTGACTACTGT
GAGAAAAAACAACTCATTGTCACTGCATCAACCGATTGCTATGTCCGATT
ATGGACAATCAATGGTAAATACCTTGGTACATTCGGACAAAAACAACCCT
GGGACTCACTCGAGAATTCAGTCAACTTGAAAAAAGCACGGCGCCTACCT
CCTGATCTTCAACGTATTGCATCCACTCAAACATTAAAGGTGGTGAACGG
GTCCGCACCACGCTGGAAACTAGCGAGaaatattttcactattttacaCA
TGGGCAGACGGAACACAAAGTCCGCCGTCAAGGACGAGGACGTCACACAA
ATTATTACGAGCGAGACATCCGCTATCAATAGACACCAAATACTAGATAT
CCCTATTCATGAAGTGCTGGGCAAAAATTACAAACCGAAACAACGACACC
GTATGCCACCCATCATTAAACCAAAAATCAACAATTTGCAATGCGTCGCT
TTCTCTTCCTTACCGTTCAAAGAACTAGAACACATTGAAGAGCCCAAAAT
GCCGCAAGTTTTGGTGCACGCCATGGCTGCTAggcaacagcaacaacaac
aacaaaacaatagaACGGTCGCATCTGCCATTAACGGTGATCAAAATCGA
AAAAGTCAGTATTCGAATAACCGCAAAGGAGGGACGTCGCCCATTAGACA
TACTGTCAATAATCGTTTGCTACCGGCTATCGCAATGAATAGGAACAAAC
CCAATTGATTTtatcaacaaaaatattctacttgtaattttcttttcaat
tattATAATAAACATATTTTAATCCTATACAAA

Coding sequence (CDS) from alignment at scaffold_266:287261..291743+

>TCONS_00055932 ID=TCONS_00055932|Name=TCONS_00055932|organism=Clytia hemisphaerica|type=CDS|length=6810bp|location=Sequence derived from alignment at scaffold_266:287261..291743+ (Clytia hemisphaerica)
GAGACCGACGATGGTGAAAACAACACGAAGAGCGACTTCAACAACACGAA
CACCAATTCAAGGGTACAAGTACCCGCCAAAGAAAACAACTCGaCTGCGA
GCGTAGCATTCCAACAAAAGGCGAAGATTGAAGACCAGATGAACAATGAG
AATTTGGAGCAATTGCAAAAGATCTTCGAAGACGCTGATGAGGATGGAGG
AGGTGGGTTGGATATAGAAGAATTCGGACAAGCTATGAAAATGGCGTTTG
GAAGTTCGGATGAGTTAGATGACGAACAACTACAATTGATGTTCATGAAA
GTTGACACAAATTGTGACGGTACGGTGGATTGGGAAGAATTTTGTTCCTA
TATGTTGTTAGAGAATCAACAAAAAGATAGTATGACCAGAGATGTTATCG
ATCTTCCCTTCCCAAATGCTGCAAGAGAAATAGCTAACCCGCATCATGAC
TCTCTCGCTAAAATCACGTATTTCCCAAGTCTTGGAGTCGCGCAACGTGC
GTCCAACGCCGTTGACAGTGAAGAACTGGATAACGGGAACGGGCGTTACA
TCTCGTGCAGTAAAGACGGTTTGTTCGTTTTCTGGAACCTGGACCTTCAG
ATTCAACGTACAATCAACTTGAATGACATGCAGACCAACGGTAGCAAATC
CAAACAAATCTGGGTTACCGACGTCGTTGCATTAGCGAACGTAAAAAAAG
TTGCCGTGGCTACAACAGAACGCGATATTACATTTTATGATTGTTCTGCT
AACAGTTTTGAGAAGCAATTTCTGTTGACAGGACTTCCACATTGTGTCTT
ATGCATGGATTACTGGTTCAACCCACAGAATATGAACGAAGGAGTTCTAG
TGACCGGTGACGCAGGAGGAAGCGTATCGTGCATGCAATTTACTCAAGCA
ACGGTCGGTTTATTTGATGTCAGTATTGGTAAACAGCACAATATGTCCAC
ATCCACTGTTCGCCGTATTCCGTTCCAAGAGTTATGTGTAGGAAGACACT
CCAGTGTCAACACCATTCTCTTCAGTGACTTACACGATGATTGGGTACGA
AAAGTCAAGTACATTCCCAACCTACAATGTTTCATTTCGTGTTCTAACAC
CGGTACGTCTTCATTATTCCTTGGTGatctacaaaataaaaagatcAAGT
CATCCTTCAAGATTCCCAAAGGTGTTTATTCCTTTGATTATGACAAAGAA
AATAACATCATTGTCACCGGAGGTCTGGATCGGTACATCCGACTCTGGAA
TCCATACGTCACTATCAAATCAACTTCAGTGTTGAAAGGACATAATTCTT
CAGTTATTCATATTGTCGCTTGTGCTGACCAAATCATCAGCTTTTCTAAG
gataaaatgattaaaatatGGGACACCAGAGATCATTGTTGTATACAAAC
CATACCAAGTAGGTTGACCGACTTTGGTGCACATCAGATCACCACTGTTT
ATTATAATCGCAAGTTACAAACATTGTTATTGGGGAGCTGCTCAATAGCG
GTGCTTGAGAAACGAAAGCCAGAGGAAGTGAATGTCTCATTGATCACAGA
GGAAGAACAACTTAGCCATCCAAAACCGCTTTGTGGTGCTCTGTATAATG
ACTTATTTAACCAAGTAGTGAGCGCGTGTCACGGATCTATCGTGAATGTG
TGGCATGTGGACACAGGAGAAAAAGCTATCATGTTCACCAATGCGCATAA
TGGTCACGAAATCACATCCATGACTTTCGATCCAACCAAACGTCGCTTAA
TTACCGGCTCACGAAATGGTTCCGTCAAGATTTGGAATTTCAACAATGGC
GCGTGTTTACATTCCATGAACGCTTTAGATGATAGTGAAGTGACAGGTAT
CGTCTGCTTGAAACAACGCATCGTAACTGTCGGCTGGAATCATAAGATTA
TGGTGTATCGTGACGTTAGAGGGGCGGAAGACGATCCGCCCAAAATGTGG
AATAACCTTCACAAAGATGATATTCTATCCGTTGATCATACCAAAGCTGG
CCTTATGGTAACCACCAGCTATGACGGACAAGTCTGTTGCTGGAACATCG
AGACGGCGCACGTCTTTTGTCAGATGAACGTCAATGACAAAAGGACCAGG
TCCAATCAAGGCGGAAAGATTGCTTGGAATAACCGTATTTTACCACGAAG
AGCCACCATCGATCTAAAGCCTGATGATATCAATAAACATTTATCAGTCG
ATAAAGTGATCTTCCTTCAGAACAGAGAACAGGACAAGAAAACAGCCACT
TTGTTGGTCAGTGTTGACGGAATCATTCAAGCATGGAGTGTTCAAGGTGG
TCTTCTGGGAAGATTTGATGCTACGGGCCGTCGTAATGATGAATCTATCT
TAGCGTTGAAAAGTGATAGCCTCAATCATATCCTGTTTACAGGTGATAGT
TCAGGCTACATCAAGATATGGGATATCAGTGATTATTGCattaaacaaca
acaaacaccTGTACAAACTAGAAGTCCTTCACCCTTAGACCAGTTCTCTA
GAAAAAAAGCTGGTAATTCGTTAGCAGGTCTTCTGAAACGATCAACCGTG
GATAGCTTTAATCGTATGACTTCTTCAAACACTAAATCTTCTAGCTCAAA
ATCTTCGAGTGACATCTTTGATTCGATTTGTAGCCCTCCTGAAACTTTAC
TTCAATTCAGGGGGCACGGTAAAAGCATTGTTTCTATTGACTACTGTGAG
AAAAAACAACTCATTGTCACTGCATCAACCGATTGCTATGTCCGATTATG
GACAATCAATGGTAAATACCTTGGTACATTCGGACAAAAACAACCCTGGG
ACTCACTCGAGAATTCAGTCAACTTGAAAAAAGCACGGCGCCTACCTCCT
GATCTTCAACGTATTGCATCCACTCAAACATTAAAGGTGGTGAACGGGTC
CGCACCACGCTGGAAACTAGCGAGaaatattttcactattttacaCATGG
GCAGACGGAACACAAAGTCCGCCGTCAAGGACGAGGACGTCACACAAATT
ATTACGAGCGAGACATCCGCTATCAATAGACACCAAATACTAGATATCCC
TATTCATGAAGTGCTGGGCAAAAATTACAAACCGAAACAACGACACCGTA
TGCCACCCATCATTAAACCAAAAATCAACAATTTGCAATGCGTCGCTTTC
TCTTCCTTACCGTTCAAAGAACTAGAACACATTGAAGAGCCCAAAATGCC
GCAAGTTTTGGTGCACGCCATGGCTGCTAggcaacagcaacaacaacaac
aaaacaatagaACGGTCGCATCTGCCATTAACGGTGATCAAAATCGAAAA
AGTCAGTATTCGAATAACCGCAAAGGAGGGACGTCGCCCATTAGACATAC
TGTCAATAATCGTTTGCTACCGGCTATCGCAATGAATAGGAACAAACCCA
ATTGAGAGACCGACGATGGTGAAAACAACACGAAGAGCGACTTCAACAAC
ACGAACACCAATTCAAGGGTACAAGTACCCGCCAAAGAAAACAACTCGaC
TGCGAGCGTAGCATTCCAACAAAAGGCGAAGATTGAAGACCAGATGAACA
ATGAGAATTTGGAGCAATTGCAAAAGATCTTCGAAGACGCTGATGAGGAT
GGAGGAGGTGGGTTGGATATAGAAGAATTCGGACAAGCTATGAAAATGGC
GTTTGGAAGTTCGGATGAGTTAGATGACGAACAACTACAATTGATGTTCA
TGAAAGTTGACACAAATTGTGACGGTACGGTGGATTGGGAAGAATTTTGT
TCCTATATGTTGTTAGAGAATCAACAAAAAGATAGTATGACCAGAGATGT
TATCGATCTTCCCTTCCCAAATGCTGCAAGAGAAATAGCTAACCCGCATC
ATGACTCTCTCGCTAAAATCACGTATTTCCCAAGTCTTGGAGTCGCGCAA
CGTGCGTCCAACGCCGTTGACAGTGAAGAACTGGATAACGGGAACGGGCG
TTACATCTCGTGCAGTAAAGACGGTTTGTTCGTTTTCTGGAACCTGGACC
TTCAGATTCAACGTACAATCAACTTGAATGACATGCAGACCAACGGTAGC
AAATCCAAACAAATCTGGGTTACCGACGTCGTTGCATTAGCGAACGTAAA
AAAAGTTGCCGTGGCTACAACAGAACGCGATATTACATTTTATGATTGTT
CTGCTAACAGTTTTGAGAAGCAATTTCTGTTGACAGGACTTCCACATTGT
GTCTTATGCATGGATTACTGGTTCAACCCACAGAATATGAACGAAGGAGT
TCTAGTGACCGGTGACGCAGGAGGAAGCGTATCGTGCATGCAATTTACTC
AAGCAACGGTCGGTTTATTTGATGTCAGTATTGGTAAACAGCACAATATG
TCCACATCCACTGTTCGCCGTATTCCGTTCCAAGAGTTATGTGTAGGAAG
ACACTCCAGTGTCAACACCATTCTCTTCAGTGACTTACACGATGATTGGG
TACGAAAAGTCAAGTACATTCCCAACCTACAATGTTTCATTTCGTGTTCT
AACACCGGTACGTCTTCATTATTCCTTGGTGatctacaaaataaaaagat
cAAGTCATCCTTCAAGATTCCCAAAGGTGTTTATTCCTTTGATTATGACA
AAGAAAATAACATCATTGTCACCGGAGGTCTGGATCGGTACATCCGACTC
TGGAATCCATACGTCACTATCAAATCAACTTCAGTGTTGAAAGGACATAA
TTCTTCAGTTATTCATATTGTCGCTTGTGCTGACCAAATCATCAGCTTTT
CTAAGgataaaatgattaaaatatGGGACACCAGAGATCATTGTTGTATA
CAAACCATACCAAGTAGGTTGACCGACTTTGGTGCACATCAGATCACCAC
TGTTTATTATAATCGCAAGTTACAAACATTGTTATTGGGGAGCTGCTCAA
TAGCGGTGCTTGAGAAACGAAAGCCAGAGGAAGTGAATGTCTCATTGATC
ACAGAGGAAGAACAACTTAGCCATCCAAAACCGCTTTGTGGTGCTCTGTA
TAATGACTTATTTAACCAAGTAGTGAGCGCGTGTCACGGATCTATCGTGA
ATGTGTGGCATGTGGACACAGGAGAAAAAGCTATCATGTTCACCAATGCG
CATAATGGTCACGAAATCACATCCATGACTTTCGATCCAACCAAACGTCG
CTTAATTACCGGCTCACGAAATGGTTCCGTCAAGATTTGGAATTTCAACA
ATGGCGCGTGTTTACATTCCATGAACGCTTTAGATGATAGTGAAGTGACA
GGTATCGTCTGCTTGAAACAACGCATCGTAACTGTCGGCTGGAATCATAA
GATTATGGTGTATCGTGACGTTAGAGGGGCGGAAGACGATCCGCCCAAAA
TGTGGAATAACCTTCACAAAGATGATATTCTATCCGTTGATCATACCAAA
GCTGGCCTTATGGTAACCACCAGCTATGACGGACAAGTCTGTTGCTGGAA
CATCGAGACGGCGCACGTCTTTTGTCAGATGAACGTCAATGACAAAAGGA
CCAGGTCCAATCAAGGCGGAAAGATTGCTTGGAATAACCGTATTTTACCA
CGAAGAGCCACCATCGATCTAAAGCCTGATGATATCAATAAACATTTATC
AGTCGATAAAGTGATCTTCCTTCAGAACAGAGAACAGGACAAGAAAACAG
CCACTTTGTTGGTCAGTGTTGACGGAATCATTCAAGCATGGAGTGTTCAA
GGTGGTCTTCTGGGAAGATTTGATGCTACGGGCCGTCGTAATGATGAATC
TATCTTAGCGTTGAAAAGTGATAGCCTCAATCATATCCTGTTTACAGGTG
ATAGTTCAGGCTACATCAAGATATGGGATATCAGTGATTATTGCattaaa
caacaacaaacaccTGTACAAACTAGAAGTCCTTCACCCTTAGACCAGTT
CTCTAGAAAAAAAGCTGGTAATTCGTTAGCAGGTCTTCTGAAACGATCAA
CCGTGGATAGCTTTAATCGTATGACTTCTTCAAACACTAAATCTTCTAGC
TCAAAATCTTCGAGTGACATCTTTGATTCGATTTGTAGCCCTCCTGAAAC
TTTACTTCAATTCAGGGGGCACGGTAAAAGCATTGTTTCTATTGACTACT
GTGAGAAAAAACAACTCATTGTCACTGCATCAACCGATTGCTATGTCCGA
TTATGGACAATCAATGGTAAATACCTTGGTACATTCGGACAAAAACAACC
CTGGGACTCACTCGAGAATTCAGTCAACTTGAAAAAAGCACGGCGCCTAC
CTCCTGATCTTCAACGTATTGCATCCACTCAAACATTAAAGGTGGTGAAC
GGGTCCGCACCACGCTGGAAACTAGCGAGaaatattttcactattttaca
CATGGGCAGACGGAACACAAAGTCCGCCGTCAAGGACGAGGACGTCACAC
AAATTATTACGAGCGAGACATCCGCTATCAATAGACACCAAATACTAGAT
ATCCCTATTCATGAAGTGCTGGGCAAAAATTACAAACCGAAACAACGACA
CCGTATGCCACCCATCATTAAACCAAAAATCAACAATTTGCAATGCGTCG
CTTTCTCTTCCTTACCGTTCAAAGAACTAGAACACATTGAAGAGCCCAAA
ATGCCGCAAGTTTTGGTGCACGCCATGGCTGCTAggcaacagcaacaaca
acaacaaaacaatagaACGGTCGCATCTGCCATTAACGGTGATCAAAATC
GAAAAAGTCAGTATTCGAATAACCGCAAAGGAGGGACGTCGCCCATTAGA
CATACTGTCAATAATCGTTTGCTACCGGCTATCGCAATGAATAGGAACAA
ACCCAATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035217	XLOC_035217	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055932-protein	TCONS_00055932-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055932-exon-scaffold_266-1491911889:287261..287353	TCONS_00055932-exon-scaffold_266-1491911889:287261..287353	Clytia hemisphaerica	exon
TCONS_00055932-exon-scaffold_266-1510915933:287261..287353	TCONS_00055932-exon-scaffold_266-1510915933:287261..287353	Clytia hemisphaerica	exon
TCONS_00055932-exon-scaffold_266-1575043694:287261..287353	TCONS_00055932-exon-scaffold_266-1575043694:287261..287353	Clytia hemisphaerica	exon
TCONS_00055932-exon-scaffold_266-1491911889:288357..291743	TCONS_00055932-exon-scaffold_266-1491911889:288357..291743	Clytia hemisphaerica	exon
TCONS_00055932-exon-scaffold_266-1510915933:288357..291743	TCONS_00055932-exon-scaffold_266-1510915933:288357..291743	Clytia hemisphaerica	exon
TCONS_00055932-exon-scaffold_266-1575043694:288357..291743	TCONS_00055932-exon-scaffold_266-1575043694:288357..291743	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_266	supercontig	scaffold_266:287261..291743 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0867692	0.0634602	0.0614028	0.0360438	0.0585065	0.0346745	0.0557777	0.0261092	0.0182797	0.0113212	0.0439544	0	0.00721343	0.067421	0	0.00660934	0.0162843	0.0417273	0	0.012065	0.0209733	0	0.012436	0.0678367	0.314416	0.436502	0	0.015872	0.0240768	0.0122652

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR024977	Apc4_WD40_dom
IPR019775	WD40_repeat_CS
IPR018247	EF_Hand_1_Ca_BS
IPR017986	WD40_repeat_dom
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00055932 vs. Swiss-Prot (Human)
Match: WDR49 (WD repeat-containing protein 49 OS=Homo sapiens GN=WDR49 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.777e-56
Identity = 149/481 (30.98%), Postives = 232/481 (48.23%), Query Frame = 1

Query: 1150 SSFKIPKGVYSFDYDKENNIIVTGGLDRYIRLWNPYVTIKSTSVLKGHNSSVIHIVACAD--QIISFSKDKMIKIWDTRDHCCIQTIPSRLT---DF-------GAHQITTVYYNRKLQTLLLGSCSIAVLEKRKPEEVNVSLITEEEQLSHPKPLCGALYNDLFNQVVSACHGSIVNVWHVDTGEKAIMFTNAHNGHEITSMTFDPTKRRLITGSRNGSVKIWNFNNGACLHSMNALDDS--EVTGIVCLKQRIVTVGWNHKIMVYRDVRGAEDD-PPKMWNN--LHKDDILSVDHTKAGLMVTTSYDGQVCCWN--IETAHVFCQMNVND--KRTRSNQGGKIAWNNRILPRRATIDLKPD-------DINKHLSVDKVIFLQNREQDKKTATL-LVSV--DGIIQAWSV-QGGLLGRFDATGRRNDESILALKSDSLNHILFTGDSSGYIKIWDISDYCIKQQQTPVQTRSPSPLDQF 2496
            +SF I +G+++FDY    N+I T G++  + LWNPYV  K   VL GH++SVI +    +  Q+ SFSKDK++++WD +    IQ I        DF        AH    + +N +L  L + S +   ++                  SH K +   LYN +  QV+S+  GS V+ W +DTG+K   FT  H   EI++M  D  + RL+TGS +G+VKIW+F NG C H++N   D   +++ I+ LK++I+  GW   I V+R     +    P+ W     H DDIL         +VT SYDG++  WN   E AH     +     K     +  K+    R  P     D           D     +V ++ FL+ R+    T    LVS    G ++ W + +  LL  F A    +    + + +D +N  L TGD  G++KIW+I +YC+   +  + T++P+ +  F
Sbjct:   14 TSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVVSKPVGVLWGHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRIACSFPKSQDFRCLFHFDEAHGRLFISFNNQLALLAMKSEASKRVK------------------SHEKAVTCVLYNSILKQVISSDTGSTVSFWMIDTGQKIKQFTGCHGNAEISTMALDANETRLLTGSTDGTVKIWDF-NGYCHHTLNVGQDGAVDISQILILKKKILVTGWERAITVFRPQNFNQFFIQPEEWKGGIQHHDDILCAAFLPPQTLVTGSYDGEIVLWNNSTENAHHVLHPDYQRLLKSKLDTKPQKLLSAGRSQPSHPMADHSTTGVRNFEIDTEGKNAVMRLCFLKARKNTAVTGGANLVSCGGSGYVRFWDIYKKQLLAEFLA---HSGVGSIIMSTDKMNRYLTTGDLDGWLKIWNIEEYCLNSSKNKI-TKAPTLIRSF 471

The following BLAST results are available for this feature:

BLAST of TCONS_00055932 vs. Swiss-Prot (Human)

BLAST of TCONS_00055932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR49	5.777e-56	30.98	WD repeat-containing protein 49 OS=Homo sapiens GN...	[more]

You are here

TCONS_00055932 (transcript) - C. hemisphaerica