TCONS_00056022 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056022
Unique Name	TCONS_00056022
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2882

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_266:399586..404200-

transcript sequence

>TCONS_00056022 ID=TCONS_00056022|Name=TCONS_00056022|organism=Clytia hemisphaerica|type=transcript|length=2882bp
ATTTTTGCGAGTATAAATTATacaaaagtttgttttgtttgcATAAATTA
CTAGTAAAAATATAACGCTGTAAAAATTTCTGATGTAATTTTTAGATACG
ATTTCTAGGGAGCCACTGGTTTCCTATAAATGGAATTGAAAATGTGGAAT
AGCTTCAGTTAAAGATTAAGATCTGGAAAAGAAGGACTTTTTCATGTCAA
GAAATTCTCgaaagtgtttttaaaatttaaattttattcaagTTTTGCTG
TAACTTTTCAACGTTTATCAATCAAAAATGGTTTGCTCGTTTTCTTTTGA
CAATATTATGGaatctaaaacaaaagaaaGTGCAATGTTGCATTCAACAC
AATCAGGAAAAGTTTATGAGAACCCACTGTCAGGACGTAAAGTTGCTCGT
GTCCTGGTTATCTACACTGGAGGAACGATTGGCATGAAAGACAATGGAAC
TGGAGGATACACAGTTGTCCCAAACTATTTTGCACAAGCTTTAAAGAGAC
TACCCATGTTATATGATGAAGACTTTGCCGAAAGCGGAATGCCAGAACTC
AGCAATGAATGTGAAATGAACCCTGATTTACCTTATTGCAAATATTCAAA
GCTGGTTATGCCGATGTCAAAGATGGGAGTCAGAGTGGTTTATTATATCA
AAGAATTGGATCCTATACTGGATTCATCTAACATGTCAATGGAACATTGG
ACCATGATTGCCAAAGTTGTCAAAGAGAATTATGATTATTTCGATTCATT
TGTTATTCTTCATGGTACAGACACTATGGCTTACACTGCGTCAGCTTTAT
CATAcatgtttgaaaatttggatAAAACTGTTGTCTTAACAGGTTCGCAG
atCCCAATTTTCGAACAAAGGAATGATGGACGTAGTAATTTCATTGGTGC
ATTAGTAATAGCTGGACACTTTATCATACCTGAAGTTACACTTTTCTTCA
ACAACAAACTTTTCCGTGGAAACAGAAGTCAAAAAGTTAGTGCTTCAGAT
CTAGATGCATTTGATTCACCAAACTTGCCACCCCTTGCAAAACTTGGTAC
AGACATTGAAGTTGCTTGGGATGCTGTATTTCCTAAAACATCAATGTTAC
CTTTTCACCTACacgataaaatgagtgaaaatGTTGGTTTACTACAATTA
TTCCCAGGAATCAATGCTCAAATTGTTCGAGCTTTCCTATCAGCACCAAT
GGAAGGAATTGTTATTGAATCTTTTGGTAGCGGAAACATCCCATCCAATC
GACCTGATCTTGTCAAAGAATTCAAGGAAGCAGCTGAAAGAGGTGTACTG
ATGTTGAACATTACGCAATGTGCTCGTGGAACTGTCACTGATGCTTATGC
TGCTGGACGTGTTCTGTTTGAGATTGGGGTCATCCCAGGATATGACATGA
CTCCTGAAGCAGCTTTAGCAAAAATGGCTTATGTATTAAGTAAGAAAGAA
ATCACACACAGTCAAAGGAGAgaatttttagagaaaaatattcGAGGAGA
GATGACATTCCCAAAAACTCAcaaacaattttcaatgaaGGATGGAGGAT
TGATCCAAACAGTTGCAAAAACTCTTAGCCTTGGCTCTCAACAGGAAATG
AATTCAGTACGAAAGACGTTGCTTCCTGTCCTTCTCACTTGTGCAGCAAA
AGCAGGTGACCTGAATTCCATCAAAGATTTGGTTGATCAGGGTGCAAATT
TGAATGAACCTTCAGATTATGATGGCAAAACGAGTCTTCATTTAGCAGCA
GCAGAAGGACATGTCAATGTTGTTCAATATTTGTTACTTCACGGTGCTTC
ATACTTTGTGCGAGACCGAAGGGGAAGAACTCCTTTGTTTGATGCTATAA
GGAATAAGAATTCAAGGATAGTGGACATGTTGATCTCAAGTGGAGCGAAC
TTTGATCAAGACAATATGGAAGTTGCCAGAGAGTTGAGTATAGCAGCAAC
AGATAACGATGTGGAACGGTTGAGGTTGTGGTTGAGATGTAACGTCAATA
TGAACATTTCAGACCTTGAAGGAAGGTCACCTCTTCACGTGgcTGTCCTC
AAAGGGAACAAAGAAGCAGTCAAATTTCTTGTTGAAGAAGCACATGTAAA
CGTCAATCGAAAAGACATCTTCGGTCGAACGCCTATTGAAAATGCAGTCG
AACTTCAATCCAAAGATGTTCTACAAATTTTGCTACAAGTACTACAAAAC
AAACGAAGTAACGGTACTATGAATAAATTGAACGGAGTCACTGGTGATGT
TAATATGAATAATCTTATAAACTGCAAAATGAACTGTGGGGGAAATTGAT
GTACTTGTTGTGGACTCAAATTTCCCCCTCACATACAAATGTTTTAGCAT
AcatttttgctaaaagtcgAATCGTATATATAATAGTTTTCTACCtggat
tttgttgaattttgctTGCTTGCTGGCCGGAGAATACAAATTGGTGAATT
GTGTATCATACAGAGCTTGCTGAtgtcaacaaaatatttttctttccggT
AGAATAACTATATCTTATTTTATCATGTCTTACATTATTTTGTAATGTAC
ATATTGATTTTCAGATCCTTGATATTTTCTCGCATTCTGAGctgcaaaaa
attctttgtcACTTCCATCATggttcttttcaaaaaaaaatcttccaaTC
TTTTAATCTCAGGGATAAGGCTTGTTTTATGTTATTtatatgaaagtttt
tttttgaaagtatatTTATTTGAGATATCTTTATACTGTacataatttgt
aaatagttcaTCAAATTTATTCAAGTCAAAAAAGATGGTTAACaatgaaa
ttcaatgtttagaGTTTTGTTCTTGTACATGACTAAAAAGAAAGATGATG
TagtattttgaaatacagaaGCATCTGGCGAT

Run BLAST on NCBI

transcript from alignment at scaffold_266:399586..404200-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056022 ID=TCONS_00056022|Name=TCONS_00056022|organism=Clytia hemisphaerica|type=transcript|length=4615bp|location=Sequence derived from alignment at scaffold_266:399586..404200- (Clytia hemisphaerica)
ATTTTTGCGAGTATAAATTATACAAAAGTTTGTTTTGTTTGCATAAATTA
CTAGTAAAAATATAACGCTGTAAAAATTTCTGATGTAATTTTTAGATACG
ATTTCTAGGGAGCCACTGGTTTCCTATAAATGGAATTGAAAATGTGGAAT
AGCTTCAGTTAAAGATTAAGATCTGGAAAAGAAGGACTTTTTCATGTCAA
GAAATTCTCGAAAGTGTTTTTAAAATTTAAATTTTATTCAAGTTTTGCTG
TAACTTTTCAACGTTTATCAATCAAAAATGGTTTGCTCGTTTTCTTTTGA
CAATATTATGGAATCTAAAACAAAAGAAAGTAAGTATAAGAAAAAAATAT
TTCATTTCAATATTGATAAAATTTTCCTCATTTTCGAGGAGGAATGAAAG
AGGTGTGTTTCAGTGAGTGTTGTCTCTCTTTTTTTATCCAAAAATTTTAA
GAGGTTCAACGTTTTGATTTATCCGCGGTTTTTTTATAGACGCGTTTGTG
GAGCAATACGAAAATAAAACTTTTTGCTAAGAGTTAGTGCTTTGGTGTGT
TTAAATTGAAAGATACCAGTTTATTTTAAATATTGTTCAGTTAATGAGAG
AGTTTCTCTGTAGTTGTTAAATGATGAACTTTTTTTTTAATTCTGATTTT
TTCAGCTGCCTTTCTATCTCTTTCCCAGTAAAATTACACAAGCCTCATTT
TTTTATAAAAACACAAAAAATGAAATTCTTTCTGTGTTTTTTTTTGTTTC
AAAATGGGTCAAGAGAAGATTAAGATATGGTTTTTGAATAAATCCATGAA
AAGGGTTTTTGTTCAACTGCCAACATTAATAGTGAAAATGTCAGATTATT
TACCTGACATGAGTTTTTAAAATTTATTTAAAATCATGCTAGTATGTCAT
TTTTATTTACACATCATTCTTTTCAATATTTCTAGGTGCAATGTTGCATT
CAACACAATCAGGAAAAGTTTATGAGAACCCACTGTCAGGACGTAAAGTT
GCTCGTGTCCTGGTTATCTACACTGGAGGAACGATTGGCATGAAAGACAA
TGGAACTGGAGGTGTGTATGATTCTAATATTTTTGTAAATTTCTACTCAT
CCAAAGAATTCACAGCGATGTTGAAGTGCGGAGCCATCTTCTTATTCCTG
TTTCTTTTTAAACCAAATTACAGTTCAAAGGCTAATTTTTGATCTATTTT
TTAGGATACACAGTTGTCCCAAACTATTTTGCACAAGCTTTAAAGAGACT
ACCCATGTTATATGATGAAGACTTTGCCGAAAGCGGAATGCCAGAACTCA
GCAATGAATGTGAAATGAACCCTGATTTACCTTATTGCAAATATTCAAAG
CTGGTTATGCCGTAAGTATTTTATGAATGATTGCCAGTACCTTTTTGGAA
TTTAAAGTTTGTCGATTGTTTTATAAATTAAATGATTTCTTTTTTATTTA
TGTTTTTGAAACTTCTTCAAGAATACTGTGTTACATTGAGCGTGAGTAGG
CTTTGACTCTAGATAGTTTCTTTTGCCTTTTAGGATGTCAAAGATGGGAG
TCAGAGTGGTTTATTATATCAAAGAATTGGATCCTATACTGGATTCATCT
AACATGTCAATGGAACATTGGACCATGATTGCCAAAGTTGTCAAAGAGAA
TTATGATTATTTCGATTCATTTGTTATTCTTCATGGTACAGACACTATGG
CTTACACTGCGTCAGCTTTATCATACATGTTTGAAAATTTGGATAAAACT
GTTGTCTTAACAGGTTCGCAGGTAATTTGAAAGAAACACTTTTTCAACAA
CTTCATTTATGTTCTCATGGGAATTTCCCTACTGTACACATTCTCTTTTA
TAATGATTGACAGATGATGTAACATTACATAACTTTATAGAGTTGATTAG
TTAATCTTTTTGATATTGTTTACTCAGTAACTTTTAGTTATAATCCATTG
TTATTTTGTTTTTATAGATCCCAATTTTCGAACAAAGGAATGATGGACGT
AGTAATTTCATTGGTGCATTAGTAATAGCTGGACACTTTATCATACCTGA
AGTTACACTTTTCTTCAACAACAAACTTTTCCGTGGAAACAGAAGTCAAA
AAGTTAGTGCTTCAGATCTAGATGCATTTGATTCACCAAACTTGCCACCC
CTTGCAAAACTTGGTACAGACATTGAAGTTGCTTGGGATGCTGTATTTCC
TAAAACATCAATGTTACCTTTTCACCTACACGATAAAATGAGTGAAAATG
TTGGTTTACTACAATTATTCCCAGGAATCAATGCTCAAATTGTTCGAGCT
TTCCTATCAGCACCAATGGAAGGAATTGTTATTGAATCTTTTGGTAGCGG
AAACATCCCATCCAATCGACCTGATCTTGTCAAAGAATTCAAGGAAGCAG
CTGAAAGAGGTGTACTGATGTTGAACATTACGCAATGTGCTCGTGGAACT
GTCACTGATGCTTATGCTGCTGGACGTGTTCTGTTTGAGATTGGGGTCAT
CCCAGGATATGACATGACTCCTGAAGCAGCTTTAGCAAAAATGGCTTATG
TATTAAGTAAGAAAGAAATCACACACAGTCAAAGGAGAGAATTTTTAGAG
AAAAATATTCGAGGAGAGATGACATTCCCAAAAACTCACAAACAATTTTC
AATGAAGGATGGAGGATTGATCCAAACAGTTGCAAAAACTCTTAGCCTTG
GCTCTCAACAGGTAAAATGAAAAGATATTTATAGATTGATAAAATTTTCC
CATATGAAAGTTTATAAATTCTTCTTTGAGCTATATCACTTTCACTTCTC
ACACTCTTGGATGTTTACATCTTATTTAACAATGTTTATCAATTTATCTT
ATCCAGGAAATGAATTCAGTACGAAAGACGTTGCTTCCTGTCCTTCTCAC
TTGTGCAGCAAAAGCAGGTGACCTGAATTCCATCAAAGATTTGGTTGATC
AGGGTGCAAATTTGAATGAACCTTCAGATTATGATGGCAAAACGAGTCTT
CATTTAGCAGCAGCAGAAGGACATGTCAATGTTGTTCAATATTTGTTACT
TCACGGTGCTTCATACTTTGTGCGAGACCGAAGGGGAAGAACTCCTTTGT
TTGATGCTATAAGGTATGTATTACATAATATTGCTTTTAAACGTTGTCAA
TTTTTTATTTTAATCTGATTTGCCATTTTCACTTATTCGTATCTTGGTTT
TTTTAAACAAATATTTCTGCCTGTGGTTTATAGATATTAGTATTACCTGG
ATAATTAATGTAAAATTTCTTTCCCTTTTTTAGGAATAAGAATTCAAGGA
TAGTGGACATGTTGATCTCAAGTGGAGCGAACTTTGATCAAGACAATATG
GAAGTTGCCAGAGAGTTGAGTATAGCAGCAACAGATAACGATGTGGAACG
GTTGAGGTTGTGGTTGAGATGTAACGTCAATATGAACATTTCAGACCTTG
AAGGAAGGTCACCTCTTCACGTGGTAAGTGGCCTTATAGTCTATTTTATA
AAAAATATTTTTCAACTTCTTTATTGTTGAATAAAAAAATTCACATGAAA
ATTAACTTCTACATTATACTAAATGCTTTAACGTGAAGGATAACAGCGAT
ATAATTGGTATGATAAAATAACAATATTTACCACGATTTGAATGGTAATG
AACTGTTAATATCCAAGTTTGTAATATTGATATATTTTCTCNTAACAATA
TTTACCACGATTTGAATGGTAATGAACTGTTAATATCCAAGTTTGTAATA
TTGATGTATTTATTTATTTTTCAGGCTGTCCTCAAAGGGAACAAAGAAGC
AGTCAAATTTCTTGTTGAAGAAGCACATGTAAACGTCAATCGAAAAGACA
TCTTCGGTCGAACGCCTATTGAAAATGCAGTCGAACTTCAATCCAAAGAT
GTTCTACAAATTTTGCTACAAGTACTACAAAACAAACGAAGTAACGGTAC
TATGAATAAATTGAACGGAGTCACTGGTGATGTTAATATGAATAATCTTA
TAAACTGCAAAATGAACTGTGGGGGAAATTGATGTACTTGTTGTGGACTC
AAATTTCCCCCTCACATACAAATGTTTTAGCATACATTTTTGCTAAAAGT
CGAATCGTATATATAATAGTTTTCTACCTGGATTTTGTTGAATTTTGCTT
GCTTGCTGGCCGGAGAATACAAATTGGTGAATTGTGTATCATACAGAGCT
TGCTGATGTCAACAAAATATTTTTCTTTCCGGTAGAATAACTATATCTTA
TTTTATCATGTCTTACATTATTTTGTAATGTACATATTGATTTTCAGATC
CTTGATATTTTCTCGCATTCTGAGCTGCAAAAAATTCTTTGTCACTTCCA
TCATGGTTCTTTTCAAAAAAAAATCTTCCAATCTTTTAATCTCAGGGATA
AGGCTTGTTTTATGTTATTTATATGAAAGTTTTTTTTTGAAAGTATATTT
ATTTGAGATATCTTTATACTGTACATAATTTGTAAATAGTTCATCAAATT
TATTCAAGTCAAAAAAGATGGTTAACAATGAAATTCAATGTTTAGAGTTT
TGTTCTTGTACATGACTAAAAAGAAAGATGATGTAGTATTTTGAAATACA
GAAGCATCTGGCGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035250	XLOC_035250	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_266	supercontig	scaffold_266:399586..404200 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182888	0	0.158535	0.0841471	2.45831	2.31777	9.05178	14.1721	32.4309	63.7584	37.4436	122.657	13.115	2.27013	5.74234	1.86375	3.87616	5.56728	7.30401	11.0063	62.2352	106.879	4.66351	5.24409	0.795787	0.924873	15.4825	6.31947	22.3861	13.5323

Blast

[Close]

BLAST of TCONS_00056022 vs. Swiss-Prot (Human)
Match: LPP60 (60 kDa lysophospholipase OS=Homo sapiens GN=ASPG PE=2 SV=3)

HSP 1 Score: 434.491 bits (1116), Expect = 4.434e-140
Identity = 236/564 (41.84%), Postives = 344/564 (60.99%), Query Frame = 2

Query:  398 RVLVIYTGGTIGMKDNGTGGYTVVPNYFAQALKRLPMLYDEDFAES-GMPELSNECEMNPDLPYCKYSKLVMPMSKMGVRVVYYIKELDPILDSSNMSMEHWTMIAKVVKENYDYFDSFVILHGTDTMAYTASALSYMFENLDKTVVLTGSQIPIFEQRNDGRSNFIGALVIAGHFIIPEVTLFFNNKLFRGNRSQKVSASDLDAFDSPNLPPLAKLGTDIEVAWDAVFPKTSMLPFHLHDKMSENVGLLQLFPGINAQIVRAFLSAPMEGIVIESFGSGNIPSNRPDLVKEFKEAAERGVLMLNITQCARGTVTDAYAAGRVLFEIGVIPGYDMTPEAALAKMAYVLSKKEITHSQRREFLEKNIRGEMTFPKT-HKQFSMKDGGLIQTVAKTLSLGSQQEMNSVRKTLLPVLLTCAAKAGDLNSIKDLVDQGANLNEPSDYDGKTSLHLAAAEGHVNVVQYLLLHGASYFVRDRRGRTPLFDAIRNKNSRIVDMLISSGANFDQDNMEVA-RELSIAATDNDVERLRLWLRCNVNMNISDLEGRSPLHVAVLKGNKEAVKFL 2080
            R+L +YTGGTIGM+     G  V     A  L+ LPM +DE+ A + G+ E                  LV+P +    R++Y + E  P+ DSS+M++  W  +A+ +K +Y+ +  FV++HGTDTMA+ AS LS+M ENL KTV+LTG+Q+PI    +DGR N +GAL++AG ++IPEV LFF N+LFRGNR+ KV A    AF SPNL PLA +G DI +  + V          +H  M ++VGLL+L+PGI A +VRAFL  P++G+V+E+FGSGN P+ +PDL++E + A ERG++++N T C +G VT  YAAG  +   GVI G+DMT EAALAK++YVL +  ++   R+E L K++RGEMT P    ++ S++   L   V+  LSL   QE +++R  L+P L   AA AGD+ +++ LV+ G++L    D++G+T LH AA  GH   V  LL  G     RD  G +PL  A+R ++  ++ +L  +GA+     +E A  EL   A   D+E L++W +   ++     +G S LHVA   GN   V FL
Sbjct:   10 RLLAVYTGGTIGMRSEL--GVLVPGTGLAAILRTLPMFHDEEHARARGLSE----------------DTLVLPPASRNQRILYTVLECQPLFDSSDMTIAEWVCLAQTIKRHYEQYHGFVVIHGTDTMAFAASMLSFMLENLQKTVILTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQLFRGNRATKVDARRFAAFCSPNLLPLATVGADITINRELVRKVDGKAGLVVHSSMEQDVGLLRLYPGIPAALVRAFLQPPLKGVVMETFGSGNGPT-KPDLLQELRVATERGLVIVNCTHCLQGAVTTDYAAGMAMAGAGVISGFDMTSEAALAKLSYVLGQPGLSLDVRKELLTKDLRGEMTPPSVEERRPSLQGNTLGGGVSWLLSLSGSQEADALRNALVPSLACAAAHAGDVEALQALVELGSDLGL-VDFNGQTPLHAAARGGHTEAVTMLLQRGVDVNTRDTDGFSPLLLAVRGRHPGVIGLLREAGASLSTQELEEAGTELCRLAYRADLEGLQVWWQAGADLGQPGYDGHSALHVAEAAGNLAVVAFL 553

The following BLAST results are available for this feature:

BLAST of TCONS_00056022 vs. Swiss-Prot (Human)

BLAST of TCONS_00056022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LPP60	4.434e-140	41.84	60 kDa lysophospholipase OS=Homo sapiens GN=ASPG P...	[more]

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TCONS_00056022 (transcript) - C. hemisphaerica