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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056072 ID=TCONS_00056072|Name=TCONS_00056072|organism=Clytia hemisphaerica|type=transcript|length=1373bp
GAGACTTCTGGCTGCAAGCGGGAGCATATTTTTTAGCCGAACCTTTGTTT
TTGAAGCAGTTTTGGCTGGAATGGCGGAGCGAATCGGTGCCACGGTACTA
TCTGTGGCATTTCTTGTAACTTCTTTCTTAACTCTCAAGGATTTAACTTC
ATCAAATGATGTTCCAAGTCAAGTAGATGCAGGTAGCCCACACTCCAAAG
TACCGTTGGGTCCAACCATAAAATTTTTGATATGTTATGGATGAGGATAC
AAAAGGGTATTTGAGGAATACGCTCAGATTATGCAACAGCGATATCCTCA
ACTATCCATTCATGCTGCAAATTATCCACCACCACCTCTATACAAAAACC
TTGCTACCGTTGTAAGCCTTTCTAAATGGGCAGCACTTGGCACCATTGTT
TTGGGAGAGCGATTGCAAATATGGCAAACGATGAACATGCAACCACCGTC
CATGTATACTTGGGCACAAGAGCATAAGGTTCTTGCTTGTTTTGCAACAT
TCTTCCTTGGTAACTCTGTGGAAGGAGGTCTCGTTCAAACTGGAGCTTTC
GAAGTTGAACTGAAtggTATGCCCATTTGGTCCAAATTGAAATCAGGTCG
AATTCCACAGGGCAACGAGCTCTTTGATATCATCAATTCTCAAATGGATT
TATCTGGTAAATCCCAATTCACACCACCCAAAGGTAATCCACAGTTCGTT
GATACTCCGCCCAAACATGGTGGAGAGGAAAGCCAAGATGTTTTTGACAA
TGACAACGAGCTCCCTCCCATGAATGAAAACCAACAAGCCGATAGTAATG
ACTTTGCAGAATTTGATTCTGAAAGAGAAGACTTATAACGAAGTACTTCA
CAAGATACTATAAATATTTAGAGGGTAAAATTATATTAATGTACAGTACT
GTTTTTATACCTAATTTTTATTACGACTcggatttagattttttttcact
ttcattttgactgtcgacatatatttttaattcctttgttttgaaatttt
agcctTCAGATCAAAGAGTAGAATTGTTTTGTTCCTCTGTGATTTCTTGT
GTCAACTACCAGCTATTATCTTTTTGCAAGTATCATACAGATTCAATGAC
CAGAAAGTTTAggataatatatatatatatatatatatatcattagattt
tatttaacatGTTATGATAATGTTTCATTAAAGTTTTGATGACGGACAAC
ACTTTCAAATACTTTCTTACGTGGTATCGGTGTTGTCTTGATGATGTTGA
TCACACTAAATATTTTAATGTACTTTTGAACTTTTGTGGAATATTCATTA
TAATCTTGTTAGATAAAAGATAAAGAGAATCAAATCATGACGCTCTGTTG
GGTTTGAATTAATTTACTTCGAT Run BLAST on NCBI protein sequence of TCONS_00056072-protein >TCONS_00056072-protein ID=TCONS_00056072-protein|Name=TCONS_00056072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MQQRYPQLSIHAANYPPPPLYKNLATVVSLSKWAALGTIVLGERLQIWQT
MNMQPPSMYTWAQEHKVLACFATFFLGNSVEGGLVQTGAFEVELNGMPIW
SKLKSGRIPQGNELFDIINSQMDLSGKSQFTPPKGNPQFVDTPPKHGGEE
SQDVFDNDNELPPMNENQQADSNDFAEFDSEREDL Run BLAST on NCBI transcript from alignment at scaffold_267:97230..108825+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056072 ID=TCONS_00056072|Name=TCONS_00056072|organism=Clytia hemisphaerica|type=transcript|length=11596bp|location=Sequence derived from alignment at scaffold_267:97230..108825+ (Clytia hemisphaerica)
GAGACTTCTGGCTGCAAGCGGGAGCATATTTTTTAGCCGAACCTTTGTTT
TTGAAGCAGTTTTGGCTGGAATGGCGGAGCGAATCGGTGCCACGGTACTA
TCTGTGGCATTTCTTGTAACTTCTTTCTTAACTCTCAAGGATTTAACTTC
ATCAAATGATGTTCCAAGTCAAGTAGATGCAGGTAGCCCACACTCCAAAG
TACCGTTGGGTCCAACCATAAAATTTTTGATATGGTAGGTTCAAAGAAAG
TCCTTGTTTCTAATCACGTTTTTTTCACATCATTCTTCTTATGATTTTAc
ctaatattttcagttttaaagatattatcTTTTGACCTTCCTAAGGGGGT
GAATAAAAAACCTCTGTTCGTTTGTTAGTTACATAGTAAACTTCCCttgc
agttacatcaaaataccaaaaacattttgttcaaccaccttcacttcaag
ataggccaccatagacagtcaagaacaccttcctgcaccttcaaattagc
ctatcataggctgattagcctatcataagctatttagactattttatata
ggctatttagccgaaaatcgataaaaaccttgatttctgacgaaatataa
atagtcgcgtcttctctaaggaatacatggcagtggccagtgaggctgga
acttcaattttggaggattattatttttgcctcgctaacccaaatctcgc
aacctctttaccttaaggaaagatcgaaattagagttttttagagttccg
aaaaaaacgcatagcagaaattttttcatcttcacaggatcgattgtcaa
caacaaaataccgtagagtcgtctaatctcgacatacgtcttgcaatctc
gacaccggatctgtaaattaatcaaaacaaaccttgaatgaaattcttgg
tatcattcttatcgaacaagttcatccatcaaactagaagttcagtaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgtgacgtga
tagagagagagagtacaatttagtgattgattgataactttggtatgtat
ttgtttatgtttgattttttatttcgaagaccagcctactgctatgtcga
gattgcaagacgtatgtcgagattagacgactctacggtacatcttttgg
tctttgggtttgtttctgacgtttttccttcaaagaataaaTATTGATCA
CTTTCCTTTCCCCCTTCAGTGctcaagaaaaaaatgattagctcgtaTTC
TCGCGCGGGCTAATTTAAAGACGAGGCGGTAATTTTGCACTGAGGGTGcc
acttagtttccgccctaatTTGCagccacgatagaatggtccaaataccg
gggtattccaaatgataaactatgtcgttctgtaagtatttattttctga
gagatacaaatagtgtattgaatattgttaacttatttatttaagtattt
ttgagcgcaaatttaaatatatggttaaataaaaaacaaatgatagcagt
gctgttttttcctcaaacccccaggaaaagtttttttgccgacttagcta
ttttacaaatctcagAAAAGAATTCCCATAGGAATTCCaatacataaccc
gattggttaatttcggaacgacTTTCAAgagcagataattttaaaagttt
ctgaggaaatgtgtgtaatttatcgatgttgatggcttgttgattcttta
aagaaaaaagataacaggtatagctttttctNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNttcgttttcgctttgtttgtgttttagaattatgacttttagtctct
tgctccacaaatttgttctattggattcgcgccatttgcaaaagatttca
CAAGCAGTGTTTTGTTCtcaataagtttgttttgattgacagattggata
gagcctggtttagactttattcagcctttgttttgaaatttaagactcat
ctacatttagtaattttaacttCTGCCCAGCTTTGCTCgatcctgttttt
ctcttttcttttgtttgaattgttttcgaatgtatttaacgatcgtatct
ATTAATGatattcgaattcttttcaaaacaaaacaagtttcttttataga
aaagaacatttcaaatgtaaatcaaaacataaaaattaaaaagtttgtcg
aGCAATAATTTCctagcattcaaagggcgataaaaagcaagagaagaaat
tagtctctttcttcatataaaaaacattcaagtggttgatactgttaaaa
aatgtgtacgtcattttacatgtttaaattcgaaaagttatgacaagggt
ttaaaaaaagcaatttagaattgacttatttatctttttaaatctgataa
aaacaaagttgcacgattctttgtggctttcccactttttccaaaagaat
tgtaatttctacatttcactcctctttaccatgacattttctcaaattgt
cgaaaactggacggcgtatttaatgcgagcgaagcgagaaaaagatctcc
ggaggagggttagagtcaaactttggagatatctttttattcatttgatc
gtttttttaagccagcttaaACATCCaaataacctgataacagctgttca
taattttcttacgcgcaccgtaaacctctgaaggcgcttgaaaattatac
atctgaggaaaatagtcctcccgtggaaaattctacaacaagaatcttgt
tgtgcgctggaaagctaaaaactgatacggcgccatATTCAtgaacacaa
tcacgcaactttgttgtcgttcttagtccttttagacgaacgcggtcctt
acgatttcgagattgcatattcgtcagattgtttgttttcacacatccct
ttagagcttcagcgtggtgtgcagaaaacattcacaatctgatctcaggt
tacatccaaaggacttttagtgcgttcagctacagcttgaccggcgtgcg
acgccggttACCGGCTAGTATTCCATATTTTGGTACCGCGCATGCCATGC
GTGCGCATGCGCAGGGTAagaaaatcaggctttttgtcAATATAGCAGAA
CTtcattatcagaaaattagcctataatCGGTTTGTTAGCTGATGGATAG
GCGGCAATCTAAAGTATTTTCCGTTCACGTCGCCCGACCCACTCACCTGA
GTCAAAACATAAATCCCGAGTCGGACAAGTCGGAAAAAtgtcggaaaaag
ttttttatagctaagcacttctttgaatcatcattcgcttcgagtttttg
tttacttaacccacattgagtcccgtttgagtttttttttgtacccttat
tgaaattttcaagtcgaGATTCGGCAACGCGGTAGGGCCAATACTCCCAG
GAGCCAAAAATAAGGTCCACTTTTAAGGTTTACACATGCGGGCGCACATT
TAATTTggaaaatcaaagatggcggtaAGAGATTTTGTTGATTCTATGTT
CTACAGAAGAAAttcagatgatgatgaatgattcattttgtaaaataggc
agtcaaactctattagctttaaagcaagtacagatttgtacacatttttc
gtaCACATGTattatatttcgtcagaaatcaaggtttttatagattttcg
gctaaatagtctatataaaatagtctaaatagcctattgtaggctaatca
gcctatataggctaatttgaaggtgttcttgactgaTAGAATGAACTttc
ttttataggatgaaccatattcacgTGGCNggtgtgtatttttcactctt
caagcaagtacaggatactatttgggtactttttcacagaattttgctgt
ttttcaataaaaaaagtagttttataatattttgacttttttcaaatatt
aatttttttgatttgaaatttttttaatcgacaaATTATTActctttttg
agaaattttttgatttttttgaagacaaaacttccagaatggtcaagaag
tgtgtgatgaaaatcaaatNgaggctaatcaattttaatgacttttttga
ctaatgaccaagttaaaattttttaatttttttatatttgagtattaaaa
aggcatgcattcgaataataaaggtttaaaatttttctctgggctatagg
ctctgtgatggagtgcaaggctgaaagccatatgaatatggttcatccta
taaaaggaagttcattctatggtggcctatcttgaagtgaaggtggttga
acaaaatatttttggcatattgatgtaactacCTTGTGATAGTCGTTTTG
CTGGTGGGATAGCCAAGCAAGGTTATAAGctcaaaatatttaaagatgta
ccgggtgcgccacaaaaaagtttctctctttaaaagtaattttcttgaaa
tctaaaaattttaaaagaaccattcctattttattggaaagaagaaaaat
aaacttacatTTTGATGGGacatttattgaattcgattcattagatcaaa
agttatgctcaatcagggggggggtacagacacagggtactgacccatag
ccaggtggtggtgtctattttAGCANTCCATCATTGATAGTTTGCTTGAA
TTATCTGTCAATTTTCAGTCTGAAAAACTAACAATAGTACCCCTCTCttg
gtctaatctgtaaaattttaGAGTTGGTGTCCCTATTTTTTccagcaaaa
atgaagtagaacctggtactaaatatgggtgggtggtactaaacaaaatt
ttagttaaaaaatcaagttagtaccctatgggttagtaccctgcatCTGT
ACCCCCCTtggctcaattgaataaaaaagttacttttggaaagtgctcaa
aaacgttaaaaatcgacctatcaaattattcagaagcataattacatgat
ataccagtatttttgtttcagtcattataaaaatgataattagctgtcta
aatgaccgtTTGtttataaaggaaggttgaatgtcaatgaaaggaagaaa
attcgttgaaaaaggccaaaagatctggtagaattcataaaaatacatca
aatatgggtttcgaggtagatttagccttacatagacttaatccagtcta
gaaccaaaaatgtgaggaaaatttcggtaaaactaaatcaaattaatttt
gatcaagattttgaaccctttcgaccccaaaatttatgtgtttagttaat
gaaaaatgctcttaatcatgtaaaggcgattgcgattgccaaatttaaag
taaaaatttgataggtcgatttttaatgtttacgggcactttctgaaagt
aacatttttattcaattggacataaattttgatctaatgaatcgaattta
aatTTAATAAACGACCCAACGAGGatgcgaaatgaagatatttgtgattg
ccgccttgaAACAGCCCAAAACAGGCGTAAATCAAGTTTCACTAAACaga
tttttatgagattttGCCAAATAGTAATTCCCAAAAAATGTGACAGGCTA
GCTCTatagctctaaaacagcatctaataacatgaaaaccagaatagaTT
CTTCAAAGctaagtgcacttacaaacatcaatatgtcagatctaacaaaa
ttagtAATGGCACTAcccactgtcatcattgacaataaaacaaactcgat
tttctgtcaagagccttgtcaACATTCCTggcagctcagtctaccatttt
tagtgcggtccgaggattgagccgagaacgctcgcaGAACGCCCGCGAGC
TCCTGCgcaggtgaaaaacttcaatttgtcaatcattttctcaagcaaag
agtacgcaaagcgatTCGAGCTTTTTACAATGTGCTgtggatcatcaatg
gatagtattcaattatcattatccctttattttcattcgtagaacttttg
caaaaaaaaggaaaactagAAAACTTGTATTATTTACTGCTCtgtcacat
actgaatttgaaagatcttctatgtggtgtttttttgcaaacttcaaaaa
actgatttttgtcccgcctttgcgggactttggcttaagtgcttgcttGC
AGCATAGgatacaaagtccaaacatgcgtttcccgtaatttttttACGAA
GAGTTGGTCTATACTGAGTGAAGGAacgacttttgaaaaaataaactttt
cttGATCCGGAAATGTCAAAATGGCAAAAAGGTTCTTCTAATAACAAATA
GCATGACATGTTGATCAAAATCAGTCTTCTTATTATAAATTTCCAAAATG
AACCAAAAGAAACTGTTGAATtaactacaatcagtgacaaaatacttggc
acaaaagggaaacaaacaatttggaagcgctctaaattaggttggataGG
TAGGGTTTAACGCTAGAcataagacttaggaccttaggatctgaggatcc
aaaagttcaaaaacggtccagtagggcttgaaatatagcctagaaaccag
tAACCCTCCCAGAtagaaataatcgatgaaatcaagttgaaggcccaaAT
TTGACATTCTCcttcgaacttcaattttcgaaaaatggtaaaatagccaa
aattgccaatatttTATGACACTGATTGTAGAGAAAGAAAGTCTAATGAC
AATTAAAAACACCTAAAAGAGCCAAATATAGATTTATCAAGAAATTGTGC
TCAACTCTGGAGTAAACTGGTAGTACTGGTAGATAGAAGGGGTTGAACCT
ACCGTTTTCATACAAAAAGTTAGCTTGCTTTTTTGAATATTGGAAATCTA
CCGGAAATTCTACAGCAATTGTTAAATTTGGTATGGTAAAATTCTCTTTA
GATATGACTCATTTCTTTGGAACTCTTTAGAACTTTTTGGAACTCTTAAG
AACTCTATCTTGTACTTAGAAAACATCCAGTTACTTTGAATAAGACAGTT
TTACAAGGGTGATGGTCGGTTAGATTTCTTGataaaaatagcattttttt
agctttatttAGCAAATATAAAAGTGCTAGGAATGATATTTTTGAATTAA
CAAATCTACTGCAGGGGTTTGAATGGAGAAGTCATAACACATAAGTGTAA
AATGAAAAACCAGACAAAAAGGAGGAATGGCAGGGATTTAAAGAAGAGTA
ATTTTTTGAATACACCTAGCAACTTTACTTTGAAGTTTTCCCAGCCTTGG
CAAAGAGTGCGTTATTTTCTTCTTAATCCGCCGCTGCACTTATGCCTGAA
TATTACTAGGTTCTTTCTTTTAGTAGGACCTTTTTTGCATAATGACATGG
CAACTGTGAGTCTTGTTATTTTTCTAGTTATGGATGAGGATACAAAAGGG
TATTTGAGGAATACGCTCAGATTATGCAACAGCGATATCCTCAACTATCC
ATTCATGCTGCAAATTATCCACCACCACCTCTATACAAAAACCTTGCTAC
CGTTGTAAGCCTTTCTAAATGGGCAGCACTTGGCACCATTGTTTTGGGAG
AGCGATTGCAAATATGGCAAACGATGAACATGCAACCACCGTCCATGTAT
ACTTGGGCACAAGAGCATAAGGTAGGTATCACTCTGCCTTCATTGATCCT
TGTTATTTTTCTTCCAAACATCTAACCTAGTTTGCAGTTTATGAATTTTG
TTCGAAATCCAAAATGTTTTACAAACTTACTTAAATATTTGTAGAATTTA
TGATTATAATAGTAGCGAAACTATTCAGCAGTATCCCACCAACACTTGTT
CTTAATCGTTTATTTTTTTGGCTCACTACATTATGAGAAGTTAtcaataa
ataagaaaatgtatGTTTCAAGGCAATACAATATGGATGAAGATGATcaa
gtttgttttttcttcttttgaacaGGTTCTTGCTTGTTTTGCAACATTCT
TCCTTGGTAACTCTGTGGAAGGAGGTCTCGTTCAAACTGGAGCTTTCGAA
GTTGAACTGAAtggtaaatattttttgtgttttctcCTTTAATCAAGGTT
TTTTCCTTGGAAGCGTTTCATTTAATTTCGTTTATCTGGGTTACTACTGT
GGTTTGTCAATTTGTTGCCTAcctttttttggagatttttattattttaa
cttttgattttaaCCGCTGCAAATCATCTAAAACAAGTCGCTTTACCCAG
AATAAATAAAAGTCATGGCTCTGTAAGAGGATCTACTGATGTTAGTCGGC
TTCTTTGATCGTTCATCCAGATTTTGGATGAATACTATTAAACAAGCTTA
AGAGTGCGGTCATTGATCaaagcaaaacaatcgcacCACAATTAAATCTC
AACCATATAAACATAACCATAGTTTCTTTCGTTTTCTGTTCCAATTGGTC
CACATGTAGTCCTGTTGTGGTCCTTGTTGACCCAGACAAGTATAATATAT
GGGTTGTTATtatattttctcattatattgTTCCTTGGGGActtcaaaac
cagtttttaCCAATCTGGCAAAGATTTTCTATGGAGCCTTGAAGGGGGAA
AGGTCATTTTGGCTTAGAGACCCTTGGAAAGTCAACTTATTTTTAAAGCT
CCTCATTTGCAAAAGCTAATTGTACGAATTGATAGAGCCTGAAGAGTAGt
aatctccaaaatggggtcatttgtctcatttcGTTGTTTAAGTAAGTCCG
CTGGATATGGATGATACATcttcaaaaaagcaaattttgGAGAAaccttt
tgatgaaaaatattaCTTTCGGCAGATGCGTTTGGAAGAGTAATATCGAT
TATTGGTATAGTTTATAGGGTTTCCATGCCTATATATCttgagatatttg
agtttgaaattctgctgattcagcagaTAAGGGCCAAAAACACTCAAAAC
GCTCAAAACGCCGAgttagcaaaatttcaaactcaaatatatCGAGATCT
AGCAATGAAAACTCAATAAATTATACCTCTAATCAATATTACTCTTCAAG
ACGCATCCGCTGAAAGTaatcttttttcgtcaaaattttctcaaaatgct
gacgtcagcataaaaatttgcttttttgaagATCTACTCCACACTATATG
CTCTCATGCTATCATTTGCAGGTTGGTACAATTAGttttatgtaaataag
gaacttaAAAAGTTGACTTTCCAAAGGTCTCTAGGTCAAAAAGACCTTAC
CGCCTTAAAAGCTCCATAAAAAATCTTCCCCAGCTTGCCAAAAACTGGTT
TTGAACAATAtaatgagaaaatgaaaaataaacccATACGGTTGAAGCAA
AAAAGGAATTTCACCACTGGATTAATGTTAAAATAATTCTCATTAGGATA
TGACTCGTTCCTGGGGTAACTCCTGTCCTCCTATACATGGAATTTACACA
AGGGTGGTGATCAGTTCGATTTCTAGATAAAACGCTTTAGATTGTTCTGC
CTGAACAGATATTCACATTCGTCACATTCCTTTAGAGCAGAGCCCCCTCC
CCGAGTTTGTAGGGTTTCCATGCCTATATGTATATAtcttagaatatttt
tgtttgaaattctgCACTGAAATTCCACTAcactgagtcagcaaaatttt
ggcaaatttaaacttaacttcgaaaaatgtttttttcaggTATGCCCATT
TGGTCCAAATTGAAATCAGGTCGAATTCCACAGGGCAACGAGCTCTTTGA
TATCATCAATTCTCAAATGGATTTATCTGGTAAATCCCAATTCACACCAC
CCAAAGGTAATCCACAGTTCGTTGATACTCCGCCCAAACATGGTGGAGAG
GAAAGCCAAGATGTTTTTGACAATGACAACGAGCTCCCTCCCATGAATGA
AAACCAACAAGCCGATAGTAATGACTTTGCAGAATTTGATTCTGAAAGAG
AAGACTTATAACGAAGTACTTCACAAGATACTATAAATATTTAGAGGGTA
AAATTATATTAATGTACAGTACTGTTTTTATACCTAATTTTTATTACGAC
Tcggatttagattttttttcactttcattttgactgtcgacatatatttt
taattcctttgttttgaaattttagcctTCAGATCAAAGAGTAGAATTGT
TTTGTTCCTCTGTGATTTCTTGTGTCAACTACCAGCTATTATCTTTTTGC
AAGTATCATACAGATTCAATGACCAGAAAGTTTAggataatatatatata
tatatatatatatcattagattttatttaacatGTTATGATAATGTTTCA
TTAAAGTTTTGATGACGGACAACACTTTCAAATACTTTCTTACGTGGTAT
CGGTGTTGTCTTGATGATGTTGATCACACTAAATATTTTAATGTACTTTT
GAACTTTTGTGGAATATTCATTATAATCTTGTTAGATAAAAGATAAAGAG
AATCAAATCATGACGCTCTGTTGGGTTTGAATTAATTTACTTCGAT Coding sequence (CDS) from alignment at scaffold_267:97230..108825+ >TCONS_00056072 ID=TCONS_00056072|Name=TCONS_00056072|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_267:97230..108825+ (Clytia hemisphaerica)
ATGCAACAGCGATATCCTCAACTATCCATTCATGCTGCAAATTATCCACC
ACCACCTCTATACAAAAACCTTGCTACCGTTGTAAGCCTTTCTAAATGGG
CAGCACTTGGCACCATTGTTTTGGGAGAGCGATTGCAAATATGGCAAACG
ATGAACATGCAACCACCGTCCATGTATACTTGGGCACAAGAGCATAAGGT
TCTTGCTTGTTTTGCAACATTCTTCCTTGGTAACTCTGTGGAAGGAGGTC
TCGTTCAAACTGGAGCTTTCGAAGTTGAACTGAAtggTATGCCCATTTGG
TCCAAATTGAAATCAGGTCGAATTCCACAGGGCAACGAGCTCTTTGATAT
CATCAATTCTCAAATGGATTTATCTGGTAAATCCCAATTCACACCACCCA
AAGGTAATCCACAGTTCGTTGATACTCCGCCCAAACATGGTGGAGAGGAA
AGCCAAGATGTTTTTGACAATGACAACGAGCTCCCTCCCATGAATGAAAA
CCAACAAGCCGATAGTAATGACTTTGCAGAATTTGATTCTGAAAGAGAAG
ACTTATAAATGCAACAGCGATATCCTCAACTATCCATTCATGCTGCAAAT
TATCCACCACCACCTCTATACAAAAACCTTGCTACCGTTGTAAGCCTTTC
TAAATGGGCAGCACTTGGCACCATTGTTTTGGGAGAGCGATTGCAAATAT
GGCAAACGATGAACATGCAACCACCGTCCATGTATACTTGGGCACAAGAG
CATAAGGTTCTTGCTTGTTTTGCAACATTCTTCCTTGGTAACTCTGTGGA
AGGAGGTCTCGTTCAAACTGGAGCTTTCGAAGTTGAACTGAAtggTATGC
CCATTTGGTCCAAATTGAAATCAGGTCGAATTCCACAGGGCAACGAGCTC
TTTGATATCATCAATTCTCAAATGGATTTATCTGGTAAATCCCAATTCAC
ACCACCCAAAGGTAATCCACAGTTCGTTGATACTCCGCCCAAACATGGTG
GAGAGGAAAGCCAAGATGTTTTTGACAATGACAACGAGCTCCCTCCCATG
AATGAAAACCAACAAGCCGATAGTAATGACTTTGCAGAATTTGATTCTGA
AAGAGAAGACTTATAAATGCAACAGCGATATCCTCAACTATCCATTCATG
CTGCAAATTATCCACCACCACCTCTATACAAAAACCTTGCTACCGTTGTA
AGCCTTTCTAAATGGGCAGCACTTGGCACCATTGTTTTGGGAGAGCGATT
GCAAATATGGCAAACGATGAACATGCAACCACCGTCCATGTATACTTGGG
CACAAGAGCATAAGGTTCTTGCTTGTTTTGCAACATTCTTCCTTGGTAAC
TCTGTGGAAGGAGGTCTCGTTCAAACTGGAGCTTTCGAAGTTGAACTGAA
tggTATGCCCATTTGGTCCAAATTGAAATCAGGTCGAATTCCACAGGGCA
ACGAGCTCTTTGATATCATCAATTCTCAAATGGATTTATCTGGTAAATCC
CAATTCACACCACCCAAAGGTAATCCACAGTTCGTTGATACTCCGCCCAA
ACATGGTGGAGAGGAAAGCCAAGATGTTTTTGACAATGACAACGAGCTCC
CTCCCATGAATGAAAACCAACAAGCCGATAGTAATGACTTTGCAGAATTT
GATTCTGAAAGAGAAGACTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056072-exon-scaffold_267-1491911889:97230..97463 | TCONS_00056072-exon-scaffold_267-1491911889:97230..97463 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1510915933:97230..97463 | TCONS_00056072-exon-scaffold_267-1510915933:97230..97463 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1575043694:97230..97463 | TCONS_00056072-exon-scaffold_267-1575043694:97230..97463 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1491911889:105757..106000 | TCONS_00056072-exon-scaffold_267-1491911889:105757..106000 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1510915933:105757..106000 | TCONS_00056072-exon-scaffold_267-1510915933:105757..106000 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1575043694:105757..106000 | TCONS_00056072-exon-scaffold_267-1575043694:105757..106000 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1491911889:106305..106392 | TCONS_00056072-exon-scaffold_267-1491911889:106305..106392 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1510915933:106305..106392 | TCONS_00056072-exon-scaffold_267-1510915933:106305..106392 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1575043694:106305..106392 | TCONS_00056072-exon-scaffold_267-1575043694:106305..106392 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1491911889:108019..108825 | TCONS_00056072-exon-scaffold_267-1491911889:108019..108825 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1510915933:108019..108825 | TCONS_00056072-exon-scaffold_267-1510915933:108019..108825 | Clytia hemisphaerica | exon |
| TCONS_00056072-exon-scaffold_267-1575043694:108019..108825 | TCONS_00056072-exon-scaffold_267-1575043694:108019..108825 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:97230..108825 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011893 | Selenoprotein_Rdx-typ |
| IPR012336 | Thioredoxin-like_fold |
Blast
BLAST of TCONS_00056072 vs. Swiss-Prot (Human)
Match: SELT (Selenoprotein T OS=Homo sapiens GN=SELENOT PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 9.032e-41 Identity = 65/149 (43.62%), Postives = 99/149 (66.44%), Query Frame = 2
Query: 209 GPTIKFLICYG*GYKRVFEEYAQIMQQRYPQLSIHAANYPPPPLYKNLATVVSLSKWAALGTIVLGERLQIWQTMNMQPPSMYTWAQEHKVLACFATFFLGNSVEGGLVQTGAFEVELNGMPIWSKLKSGRIPQGNELFDIINSQMDLS 655
GP +KF IC GY+RVFEEY +++ QRYP + I NY P P+Y+++A+ +S+ K +G I++G+ + MQ PS++ W QE+KV AC FFL N +E + TGAFE+ LN +P+WSKL+SG +P +L I++++M L+
Sbjct: 38 GPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGK--DPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLN 184
The following BLAST results are available for this feature:
|
