TCONS_00056299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056299
Unique NameTCONS_00056299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056299 ID=TCONS_00056299|Name=TCONS_00056299|organism=Clytia hemisphaerica|type=transcript|length=311bp
NCCAAATGATGTCATTGAAAAACAGAATGAGTCGATTAATTCTGACCACG
ATACTACTGTCGATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGAT
AGTTGCGATGAGGAAAATGAAACTCACGAATCATCAGATACAATAACAAA
AGGATTGCTATGTGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCA
CCAGTCTTTATGAAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGA
GAAGGTAgttatgaatttctttataacacccctgtgtcacagacccgctg
ggaccttAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_272:1036..2380+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056299 ID=TCONS_00056299|Name=TCONS_00056299|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at scaffold_272:1036..2380+ (Clytia hemisphaerica)
NCCAAATGATGTCATTGAAAAACAGGTATAGTATTATTTCATCGCCAATA TCGTTTTACAAAGTTTTCACAAGGCTTATTTGATCTGAGCTTTTTACCGC CGAATCTCTACTCTATTTCGATAAGGGACCACAATATTGATAGAATTCTC AGATTCCCTTAGGAATAATGGAGGTTCAAAATAATGGAATAGAAGCATTA TTTTTGGGGCCTTTTGGAAGAAAATGATTTACATTGGTTACATTGGTAAA ACAATTTCGAATCCTTTTAATCCTTCGTTCCCCATTTTTTAAAAGGGAAT GTACACTATTTGTAAAGAGAGGTCATAGAGCGTACACTTTCTTTAtgata aaatgttttttccacAGTTTCTTTTTTATCCCGAAATTACAAGTCATTAA CAGTCAAAACGTAAGGTAGAATTATCCCACCTTAAAATTACACAGATTAT GGTTATTATTataatcaaagaaaataatatgTAGCTACTTTAAGCTGTCT CCGAAAATATAACCTGATCGGATTATTtggataccttatcggggaaaaaa atgtcgaagttttatttagtcgttttttttttcgtcggggaaaaatttcg tcacctagaggcattttcgtcattttcccccgaccaaaagtTCAAACTCG TCACTTTTCCCCCTACGAAATTTACAAttcagtcactttcacccaactaa attgtccaaatgaaatggtttccttcactagcttgaaaaaaatcttgtaa ttcgacgtttaaagcactaatttcggttaataaaggtgtaaaaatttagg ttttaattttggtcggggtttaaaaaatcgcggtaaaagttttggtcggg gataaaaaaattgggtaaagGTTTTGGTcaggtgataaaatatcggggaa aaaattcgtcggggggaaatttcgtcaccccctcaaaattttcgttactt tcccccgacatttttttcccgataaggttaatttaaaagaaaaaaaataa atctcgTTCTTCGAATGGAAAACCTTGTAAGTTTTGAACTCTCTTGTATT ATTTTTCAGAATGAGTCGATTAATTCTGACCACGATACTACTGTCGATAA TGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGATGAGGAAA ATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCTATGTGGC CAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTTATGAAGT CAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgttatgaat ttctttataacacccctgtgtcacagacccgctgggaccttAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035466XLOC_035466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056299-exon-scaffold_272-1491911889:1036..1060TCONS_00056299-exon-scaffold_272-1491911889:1036..1060Clytia hemisphaericaexon
TCONS_00056299-exon-scaffold_272-1510915933:1036..1060TCONS_00056299-exon-scaffold_272-1510915933:1036..1060Clytia hemisphaericaexon
TCONS_00056299-exon-scaffold_272-1575043694:1036..1060TCONS_00056299-exon-scaffold_272-1575043694:1036..1060Clytia hemisphaericaexon
TCONS_00056299-exon-scaffold_272-1491911889:2095..2380TCONS_00056299-exon-scaffold_272-1491911889:2095..2380Clytia hemisphaericaexon
TCONS_00056299-exon-scaffold_272-1510915933:2095..2380TCONS_00056299-exon-scaffold_272-1510915933:2095..2380Clytia hemisphaericaexon
TCONS_00056299-exon-scaffold_272-1575043694:2095..2380TCONS_00056299-exon-scaffold_272-1575043694:2095..2380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:1036..2380 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.46387 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 2.89498 1.63273 0 0 0 0 0 1.9026 0 3.46387 0 0 0 1.16182 0 1.56106 5.78844e-09 0 0 0 2.23252 0.945578 1.31038 0 0 1.74504 3.40021e-07 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
NCCAAATGATGTCATTGAAAAACAGAATGAGTCGATTAATTCTGACCACGATACTACTGTCGATAATGAGAGTTCCGAGGAAAATAGGACTTGCTCTGATAGTTGCGATGAGGAAAATGAAACTCACGAATCATCAGATACAATAACAAAAGGATTGCTATGTGGCCAAGAAAAGAGTGATGAAAATCATGAGCAACCCACCAGTCTTTATGAAGTCAATCATGGTGACGATGAGAAAGAATTCGGTGGAGAAGGTAgttatgaatttctttataacacccctgtgtcacagacccgctgggaccttAGGT50100150200250300Sequence
Match NameE-valueIdentityDescription
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