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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056308 ID=TCONS_00056308|Name=TCONS_00056308|organism=Clytia hemisphaerica|type=transcript|length=1819bpRun BLAST on NCBI protein sequence of TCONS_00056308-protein >TCONS_00056308-protein ID=TCONS_00056308-protein|Name=TCONS_00056308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MSKKLANEKEIERNRLEKKWKGVIQLVSALNVKNAGGASSSEEIELFSCFRun BLAST on NCBI transcript from alignment at scaffold_272:106141..117076+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056308 ID=TCONS_00056308|Name=TCONS_00056308|organism=Clytia hemisphaerica|type=transcript|length=10936bp|location=Sequence derived from alignment at scaffold_272:106141..117076+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_272:106141..117076+ >TCONS_00056308 ID=TCONS_00056308|Name=TCONS_00056308|organism=Clytia hemisphaerica|type=CDS|length=26550bp|location=Sequence derived from alignment at scaffold_272:106141..117076+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056308 vs. Swiss-Prot (Human)
Match: TTC7B (Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3) HSP 1 Score: 228.024 bits (580), Expect = 3.441e-64 Identity = 185/604 (30.63%), Postives = 305/604 (50.50%), Query Frame = 2
Query: 71 EKEIERNRLEKKWKGVIQLVSALNVKNAGGASSSEEIELFSCFYLGEAELEKTIEE-TFKKHGNFLHFKIQIEALKQXXXXXXXXXXXXXXXKEKYPRLLQDTVLLLSKYHFVIGDYDNCL-MYIR-SMEDISLEGMPRRSKCILSEAFACKAIALELQGDST-----HDEMNKDAIQAYERAGEIALAICIEEEK---QGSMKRNVSTATSSHTT-LSKLMEFAMLRPGHMFAESGMVDDAIQNYRALLKIIETKATANTRKMACRYLAQILLSCSCSQLYTPPXXXXXXXXXXXXNTVTMMSTPRKDSP---DLFANNSLKRNTLT--------DSMFCPQDXXXXXXXXXXXXXXXXXQQSEVKHTEEDSVSKERVLNETNMIYDLLIFVLTKRDQYLLLSNCLEKTMKLAYEEFNLWYNFGLSLVCAGKFSRALLMFEQCQKLQPENANVLMFCIKLCINHLHEYEDGINYATRVLDIS-SDAYIKASARLAMGICYNNMSIQGKSFEESQCLLKSAAEVLEKAKELDNNDSEILFNLAWTQVMSKQLSKGFSTLKEALVVNPSDMNSLHLLALVLSAQKKYKEALDVIETAIEEYPYEF 1810
E EIER R E +W+ + +LV L+ K +E LGE++LE+ ++E ++ + K Q+ +++ + LQ++ L+++K ++V GDY L +Y R ++D+ L +P +++EA+A K + LE S+ H + +D I YE+AG+IAL E E+ R+ + H L +E + R ++ ++G + + +R LL+ +ET+ T N R R LA+ILL C Q Y P + P SP L + K TLT +++FCPQ+ EE LL+LLI+E++ + + + E + L +++YDLL L +R QY +LS CLE+ MK A+EEF+LWY F LSL+ AGK +RA+ + ++C +L+P++A + + KLC+ LH E+ +A V+D+ + KA LA+G+ Y+ + + L + A ++A L D + F LA +S+Q+ + +++AL + D NSLHLLAL+LSAQK Y +AL++I+ A+ EYP F
Sbjct: 11 ETEIERCRSECQWERIPELVKQLSAKLIANDDMAE-------LLLGESKLEQYLKEHPLRQGASPRGPKPQLTEVRKHLTAALDRGNLKS-------EFLQESNLIMAKLNYVEGDYKEALNIYARVGLDDLPLTAVPPYRLRVIAEAYATKGLCLEKLPISSSTSNLHVDREQDVITCYEKAGDIALLYLQEIERVILSNIQNRSPKPGPAPHDQELGFFLETGLQRAHVLYFKNGNLTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLRGMCEQSYWNP-----------------LEDPPCQSPLDDPLRKGANTKTYTLTRRARVYSGENIFCPQENTEEALLLLLISESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQYEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIPLLAAKLCMGSLHWLEEAEKFAKTVVDVGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLSAQKHYHDALNIIDMALSEYPENF 583 The following BLAST results are available for this feature:
BLAST of TCONS_00056308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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