TCONS_00056553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056553
Unique NameTCONS_00056553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056553 ID=TCONS_00056553|Name=TCONS_00056553|organism=Clytia hemisphaerica|type=transcript|length=1854bp
TTTTGATCATGTTCTTAAAATTGTTCTCAAAAGGTTTACCTAGCAGTGGC
TAGTAAAATAATCTTTTCGGCCTTTACTTTTCCCGCAGACACTAACCTTC
CTATAATTTCCTTTTCAGAATCATTTAAACTAGAACATTATGTCGTTAGT
ATTCATCCTAGTTTTGATAGCTGCAATACAAAACCATGCTGAAATTATTG
AACCGCAGAataagaaaacattcgaaagaaaGATCAACACCACGCCTTCA
TATGGAGTGCCGTATGCTTACAAAATCAACACAACATCATCAGACGATGC
GCCAAATTCTAATAAAAGTAACGTTATACTCAATGGTGGGCCATGCCAAC
GAAAACCGCCATCCGCCAAAGACAGTGTATTCATCACTATCTTTAGTCTC
ATTTTCATCGTTGGGGTTACTGGAAATATCGTTGCTATAGTAATCATTGT
ATTATCCAAACGACTAAATTCCATGCCTACAAACCTCTTCGTGGTAGCGT
TAGCTGTATGTGATATTGGTGCTATTACTTTTGTGATTCCTATTCGGATT
GATAATTTATTCCATTCGCATAATTTTTGCTTCAATGCGCATGTCTGCCG
TATGTTTACCTTCACAGAGCTGTTATTCCATTCTGCCTCAATATCTCATT
TGTTCGTTATCGCAATCGAACGTTTCGTTGCTGTTAACTACCCTTTTGTT
TATCAACGTGTTATGAATAGGACTTTCACCATTATGTTGAGTTTGTATAC
ATGGTGTTACGCCCTAGTTTGGGCGTGTCTTTCACAATTCAATTGGGAAG
ATCCGTCAAATCGTTCTACATGGTTTTACGAAGATTCAAGAACAAAATTA
TGTCTTGTGCGTAACCGTATTTACTTTAATGTATCTCTCATTATGGTGTA
TATACTACCTTTGGCGGTGATGGGCGGTCTCTATCTAAGCATTTTAAGAG
TCGCTTTAAAACAGGCACGTATTATTGAATCACTGTCTGTACACAGAGAC
CAAAGTGTTAAGAAGCAACGTCGTGAGGTCAGGGCTACAAAAACATTAGC
TATCATTTACGGTGCTTTTACTGTTTGCTGGTTACCAGTCTCTCTGATCA
GTTTAACGGTTCAATGGGTGCCTCATAAATACCGAGAATTTAGAACAGAC
TTTCCAAAGTTATCAGAAGTCATATTTGCACTGTTCATTGAAGTCTTACC
AACATTGAATTCAAGTTTGAATCCATTTCTATATTTATTCTTTAATAAGA
AAGTTCGACAAGAAATGCAATCATATTATGAACGGTTTCGAAATATTTCA
CCTACTTTTCAAATGGACTCGGACAGTTCTATTGGACAGGTGGCCATACG
TTCGAAATACCTTGGTGATaattcaaaactttcaaccaaCTTTGAATCGA
ACAGTAATCATAACCAATCAACAACTAAACCCACCGAGGAGCAAAATAGA
CAGAACATTGATGAACTGAATCCAGGGCGAACAAGCTCTGTACGTTTGTG
ACAATGGAAAGAAttcatacagttgacgctctctaattcgattttgaaGG
GTGATTGGATTTACATCGAATAGTTGAGAATCGTTTATAATTTGATGGTG
ACTTCCAATATTATGGAATAAcagagcgtatcgaatagtagaacgtcgaa
ttagagagcatcaactgtatatCCAACAGTATTGTCTATCTGTTGTTcat
ttaacatctttttaactttagaagaaaaacattcaaacaacatTTTGTGT
TAACTGGTATGCGACATAATCATGAGTCTATAATAAAGActgattttata
tttttgactgtatgaatatttttcagttcactttttaaaagaatttactA
CAAA
Run BLAST on NCBI

protein sequence of TCONS_00056553-protein

>TCONS_00056553-protein ID=TCONS_00056553-protein|Name=TCONS_00056553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MSLVFILVLIAAIQNHAEIIEPQNKKTFERKINTTPSYGVPYAYKINTTS
SDDAPNSNKSNVILNGGPCQRKPPSAKDSVFITIFSLIFIVGVTGNIVAI
VIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFHSHNFCFNA
HVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIML
SLYTWCYALVWACLSQFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSL
IMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRAT
KTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFI
EVLPTLNSSLNPFLYLFFNKKVRQEMQSYYERFRNISPTFQMDSDSSIGQ
VAIRSKYLGDNSKLSTNFESNSNHNQSTTKPTEEQNRQNIDELNPGRTSS
VRL
Run BLAST on NCBI

transcript from alignment at scaffold_276:557822..559675

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056553 ID=TCONS_00056553|Name=TCONS_00056553|organism=Clytia hemisphaerica|type=transcript|length=1854bp|location=Sequence derived from alignment at scaffold_276:557822..559675 (Clytia hemisphaerica)
TTTGTagtaaattcttttaaaaagtgaactgaaaaatattcatacagtca
aaaatataaaatcagTCTTTATTATAGACTCATGATTATGTCGCATACCA
GTTAACACAAAatgttgtttgaatgtttttcttctaaagttaaaaagatg
ttaaatgAACAACAGATAGACAATACTGTTGGatatacagttgatgctct
ctaattcgacgttctactattcgatacgctctgTTATTCCATAATATTGG
AAGTCACCATCAAATTATAAACGATTCTCAACTATTCGATGTAAATCCAA
TCACCCttcaaaatcgaattagagagcgtcaactgtatgaaTTCTTTCCA
TTGTCACAAACGTACAGAGCTTGTTCGCCCTGGATTCAGTTCATCAATGT
TCTGTCTATTTTGCTCCTCGGTGGGTTTAGTTGTTGATTGGTTATGATTA
CTGTTCGATTCAAAGttggttgaaagttttgaattATCACCAAGGTATTT
CGAACGTATGGCCACCTGTCCAATAGAACTGTCCGAGTCCATTTGAAAAG
TAGGTGAAATATTTCGAAACCGTTCATAATATGATTGCATTTCTTGTCGA
ACTTTCTTATTAAAGAATAAATATAGAAATGGATTCAAACTTGAATTCAA
TGTTGGTAAGACTTCAATGAACAGTGCAAATATGACTTCTGATAACTTTG
GAAAGTCTGTTCTAAATTCTCGGTATTTATGAGGCACCCATTGAACCGTT
AAACTGATCAGAGAGACTGGTAACCAGCAAACAGTAAAAGCACCGTAAAT
GATAGCTAATGTTTTTGTAGCCCTGACCTCACGACGTTGCTTCTTAACAC
TTTGGTCTCTGTGTACAGACAGTGATTCAATAATACGTGCCTGTTTTAAA
GCGACTCTTAAAATGCTTAGATAGAGACCGCCCATCACCGCCAAAGGTAG
TATATACACCATAATGAGAGATACATTAAAGTAAATACGGTTACGCACAA
GACATAATTTTGTTCTTGAATCTTCGTAAAACCATGTAGAACGATTTGAC
GGATCTTCCCAATTGAATTGTGAAAGACACGCCCAAACTAGGGCGTAACA
CCATGTATACAAACTCAACATAATGGTGAAAGTCCTATTCATAACACGTT
GATAAACAAAAGGGTAGTTAACAGCAACGAAACGTTCGATTGCGATAACG
AACAAATGAGATATTGAGGCAGAATGGAATAACAGCTCTGTGAAGGTAAA
CATACGGCAGACATGCGCATTGAAGCAAAAATTATGCGAATGGAATAAAT
TATCAATCCGAATAGGAATCACAAAAGTAATAGCACCAATATCACATACA
GCTAACGCTACCACGAAGAGGTTTGTAGGCATGGAATTTAGTCGTTTGGA
TAATACAATGATTACTATAGCAACGATATTTCCAGTAACCCCAACGATGA
AAATGAGACTAAAGATAGTGATGAATACACTGTCTTTGGCGGATGGCGGT
TTTCGTTGGCATGGCCCACCATTGAGTATAACGTTACTTTTATTAGAATT
TGGCGCATCGTCTGATGATGTTGTGTTGATTTTGTAAGCATACGGCACTC
CATATGAAGGCGTGGTGTTGATCtttctttcgaatgttttcttatTCTGC
GGTTCAATAATTTCAGCATGGTTTTGTATTGCAGCTATCAAAACTAGGAT
GAATACTAACGACATAATGTTCTAGTTTAAATGATTCTGAAAAGGAAATT
ATAGGAAGGTTAGTGTCTGCGGGAAAAGTAAAGGCCGAAAAGATTATTTT
ACTAGCCACTGCTAGGTAAACCTTTTGAGAACAATTTTAAGAACATGATC
AAAA

Coding sequence (CDS) from alignment at scaffold_276:557822..559675

>TCONS_00056553 ID=TCONS_00056553|Name=TCONS_00056553|organism=Clytia hemisphaerica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_276:557822..559675 (Clytia hemisphaerica)
TCACAAACGTACAGAGCTTGTTCGCCCTGGATTCAGTTCATCAATGTTCT
GTCTATTTTGCTCCTCGGTGGGTTTAGTTGTTGATTGGTTATGATTACTG
TTCGATTCAAAGttggttgaaagttttgaattATCACCAAGGTATTTCGA
ACGTATGGCCACCTGTCCAATAGAACTGTCCGAGTCCATTTGAAAAGTAG
GTGAAATATTTCGAAACCGTTCATAATATGATTGCATTTCTTGTCGAACT
TTCTTATTAAAGAATAAATATAGAAATGGATTCAAACTTGAATTCAATGT
TGGTAAGACTTCAATGAACAGTGCAAATATGACTTCTGATAACTTTGGAA
AGTCTGTTCTAAATTCTCGGTATTTATGAGGCACCCATTGAACCGTTAAA
CTGATCAGAGAGACTGGTAACCAGCAAACAGTAAAAGCACCGTAAATGAT
AGCTAATGTTTTTGTAGCCCTGACCTCACGACGTTGCTTCTTAACACTTT
GGTCTCTGTGTACAGACAGTGATTCAATAATACGTGCCTGTTTTAAAGCG
ACTCTTAAAATGCTTAGATAGAGACCGCCCATCACCGCCAAAGGTAGTAT
ATACACCATAATGAGAGATACATTAAAGTAAATACGGTTACGCACAAGAC
ATAATTTTGTTCTTGAATCTTCGTAAAACCATGTAGAACGATTTGACGGA
TCTTCCCAATTGAATTGTGAAAGACACGCCCAAACTAGGGCGTAACACCA
TGTATACAAACTCAACATAATGGTGAAAGTCCTATTCATAACACGTTGAT
AAACAAAAGGGTAGTTAACAGCAACGAAACGTTCGATTGCGATAACGAAC
AAATGAGATATTGAGGCAGAATGGAATAACAGCTCTGTGAAGGTAAACAT
ACGGCAGACATGCGCATTGAAGCAAAAATTATGCGAATGGAATAAATTAT
CAATCCGAATAGGAATCACAAAAGTAATAGCACCAATATCACATACAGCT
AACGCTACCACGAAGAGGTTTGTAGGCATGGAATTTAGTCGTTTGGATAA
TACAATGATTACTATAGCAACGATATTTCCAGTAACCCCAACGATGAAAA
TGAGACTAAAGATAGTGATGAATACACTGTCTTTGGCGGATGGCGGTTTT
CGTTGGCATGGCCCACCATTGAGTATAACGTTACTTTTATTAGAATTTGG
CGCATCGTCTGATGATGTTGTGTTGATTTTGTAAGCATACGGCACTCCAT
ATGAAGGCGTGGTGTTGATCtttctttcgaatgttttcttatTCTGCGGT
TCAATAATTTCAGCATGGTTTTGTATTGCAGCTATCAAAACTAGGATGAA
TACTAACGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035633XLOC_035633Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056553-proteinTCONS_00056553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056553-exon-scaffold_276-1491911889:557822..559675TCONS_00056553-exon-scaffold_276-1491911889:557822..559675Clytia hemisphaericaexon
TCONS_00056553-exon-scaffold_276-1510915933:557822..559675TCONS_00056553-exon-scaffold_276-1510915933:557822..559675Clytia hemisphaericaexon
TCONS_00056553-exon-scaffold_276-1575043694:557822..559675TCONS_00056553-exon-scaffold_276-1575043694:557822..559675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:557822..559675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.043175	0.0426954	0.0244296	0.0956	0.058323	0.023075	0.0860549	0.161097	0.0909687	0.29265	1.61692	0	0.7179	0.879323	0.919207	1.06492	0.243233	0.365636	2.2697	1.9972	1.21131	1.22345	0.544732	0.967886	0.57965	0.352916	0.237091	0.158331	4.64461	4.78244
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00056553 vs. Swiss-Prot (Human)
Match: HRH2 (Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.336e-26
Identity = 92/330 (27.88%), Postives = 164/330 (49.70%), Query Frame = 2 
Query:  299 APNSNKSNVILNGGPCQRKPPSAKDSVFITI-FSLIFIVGVTGNIVAIVIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFH-SHNFCFNAHVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIMLSLYTWCYALVWACLS-QFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSLIMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRATKTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFIEVLPTLNSSLNPFLYLFFNKKVRQEMQSYY 1279
            APN   S+  L+   C+         + IT+  +++ ++ V GN+V  + + L++RL ++ TN F+V+LA+ D+     V+P     ++  S  + F    C ++T  +++  +ASI +LF+I+++R+ AV  P  Y  ++      +  +  W  ++  + LS    W   +  S   +  S+ K+ +  N +Y  V  ++ + LPL +M   Y  I +VA  QA+ I  +S  +  ++    RE +AT TLA + GAF +CW P         +    YR  R D   ++EV+ A+ +  L   NS+LNP LY   N+  R   Q  +
Sbjct:    2 APNGTASSFCLDSTACK---------ITITVVLAVLILITVAGNVVVCLAVGLNRRLRNL-TNCFIVSLAITDLLLGLLVLPF--SAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETSKGNHTTSKCKVQV--NEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI----REHKATVTLAAVMGAFIICWFP--------YFTAFVYRGLRGD-DAINEVLEAIVLW-LGYANSALNPILYAALNRDFRTGYQQLF 303
The following BLAST results are available for this feature:
BLAST of TCONS_00056553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HRH21.336e-2627.88Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2... [more]
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