TCONS_00056447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056447
Unique NameTCONS_00056447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056447 ID=TCONS_00056447|Name=TCONS_00056447|organism=Clytia hemisphaerica|type=transcript|length=1477bp
CGAAAaccaaaattaactttttttaacaaTACGCCATCATTCTACACCCA
AAAACGCCATTCGTCGTTTGGCGAGTTGAATTCGCGTTTGGCGAGTGATT
TTGATAGCAACAACAAAGACGGCGAGTATTttcgcaaagcattgtgggac
gAAAACAACTTTTTAGATTCATTGCGTCACATCTGCagcagttttcaaaa
aaatttgctgCGTCAAGCGACTTGGACCAGCAGAACAAAATACAGAGACA
AGAGAGAAGAATCATTTTATCCACTCTACACTTTCAAAATGAAGTGGGCA
TTCAAGGAAGAACACTCTTTAGATAGCCGAACATCCGAATCATCAAAAAT
AAGAGCAAAATACCCTGACAGAATTCCaGTCGTTGTAGAGAAAGCTCCGC
GATCAACTATTCAAGATATCGACAAGAGGAAGTTCCTCGTCCCTTCAGAC
CTTACTGTTGCACAATTCATGTACATTATTCGAAAACGCATCCAGCTTCC
ACCTGAGAAAGCTATGTTTTTATTCGTTAACAAAGTTCTACCAGCAACGA
GcGCCACCATGGGAGCTATTTATGAAGAACACAAAGACGAAGATGGCTTT
TTATACATCGCTTACAGCGGTGAAAACACCTTTGGAATGTAAACAAATCG
CTTGTACCACTGGTCATGTATCATAACTCAACAATCCCAAAAGCTATATT
tgttgttttgagaaaaaaaaattaccaactTAAATACAtttgtttgatat
tttattttgcttttggTTCTCATACCGCCTTTATGACTgcggatgaaaaa
aaaatcttgtaaaaaatatttttttttgttatttttattgttaatttATA
TACTTGGAGAAAAATTTTACGGTATTATTAGGATTTCTAGATTTAAAAAG
TATCGTAAAATTTATGTTATAGGAGGTAATCAGagaaaagtaacaaaaat
aaagtttgacCCGAAAATTGAATACAGCATTGACGTAACTGTTTCGAAAT
TTGGATAGAATTGACAAATCCAAAGATATCGTTAATAAAAAGGagacttt
tgtttttgtttgtttttctctgaTGACCTTACTCTTGCCTTGTAACACAA
CACTTTCGTCAACACACCAAAAAttgtagtaatatttttttgtcttgAAC
ACGTGCGCACGCAGAAACTTgtcaaataataaaatggtTTTGTTTTGTCA
TGATCCTTTAAACTCGTTTTTATGAtggttttttatttaaaatgatCCTT
GGTTACGTTAATAATACCAAaatgcaatagttttgacaaattttgaatgc
acttcactttcttttttacGTGTGCAATGTAAACGTagctttaaaatatt
caataccttgtaaatacagatttaaaaaaagtttgataaaaaaatttgac
gttttaTGTTCAATGCTTATTAGCTGTACCTAACTACTGAGAGAAAGGAA
ATAAAATTACTGAAAATCACAAACCAT
Run BLAST on NCBI

protein sequence of TCONS_00056447-protein

>TCONS_00056447-protein ID=TCONS_00056447-protein|Name=TCONS_00056447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
RKPKLTFFNNTPSFYTQKRHSSFGELNSRLASDFDSNNKDGEYFRKALWD
ENNFLDSLRHICSSFQKNLLRQATWTSRTKYRDKREESFYPLYTFKMKWA
FKEEHSLDSRTSESSKIRAKYPDRIPVVVEKAPRSTIQDIDKRKFLVPSD
LTVAQFMYIIRKRIQLPPEKAMFLFVNKVLPATSATMGAIYEEHKDEDGF
LYIAYSGENTFGM
Run BLAST on NCBI

transcript from alignment at scaffold_276:684112..693590+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056447 ID=TCONS_00056447|Name=TCONS_00056447|organism=Clytia hemisphaerica|type=transcript|length=9479bp|location=Sequence derived from alignment at scaffold_276:684112..693590+ (Clytia hemisphaerica)
CGAAAaccaaaattaactttttttaacaaTACGCCATCATTCTACACCCA
AAAACGCCATTCGTCGTTTGGCGAGTTGAATTCGCGTTTGGCGAGTGATT
TTGATAGCAACAACAAAGACGGCGAGTATTttcgcaaagcattgtgggac
gAAAACAACTTTTTAGATTCATTGCGTCACATCTGCagcagttttcaaaa
aaatttgctgCGTCAAGCGACTTGGACCAGCAGAACAAAATACAGAGACA
AGAGAGAAGAATCATTTTATCCACTCTACACTTTCAAAATGAAGTGGGCA
TTCAAGGAAGAACACTCTTTAGGTtagtatatattatatatatatatatt
tctcCTGTTTCAACCACTTTCATCTGAGTCTGCTTAGTTTCAGTCGTTGC
AGTAATTTGCAAACACAGAAGTGTCTGTTTAGGGGGGTCAATGGAGAAAA
GGTTTAGGTTGATTGTATGTTATAATACTGGTGCACACTTGATTAGTATT
TTCGCCTTTGTGTGTTACATTTTCTAGAGGTGTAAAATTGACAGGAAATT
GCAGGATTTTGAGCCATTAATGGTCTCATTTTCCTGATAATGTATacata
ttgggccattccagaatttggcATCAGGggcagggctcgaaataacggtc
ggacaccggatattgtccgacccaaatggCTTCATGCctgacccaaaaat
cataattttcaagctaaagcaaccctgatcggacattttgtccgacccac
ttgaaatcgtaATTTCGAGCCTTGCAGGGGGGACTGACGACACGGGACTT
CCGAggcacgtgcgtttggtttgggaatgcgaaacacgaacgcaaactac
ccatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNaaaagatatagtcaaatcttgtagggtcat
ttttcaaaaattttttgccaaattcgattttcgcatttcgccattttacc
ctacgcaaacgcacgtggagggcaaaagttttcaccaaaattcaaaattt
ccaaggcgagagaagaatccaaaacagtaaaaaagagtggaatatCTGAC
ACATTTTGCGAAAGTACATGGATTTCCATCAGAATTTCTGACCACCACtg
ggaaaaaaattatttcagaggctagaaaaaaattaaaaatgtacgTCGTG
CTGTGAAGTCGGGtagcttgcatcagtggaggctaacctgcatagccctc
aaatgacctggctggtccttaaaatacaaagttaaatcaaaacaaaaatg
gtagaatagagccagacaatctcaatcgaacggaatcgacgatcgaacaa
atcgaacgcaatcgacccattgaaattcgattgtcgaacgcgatcgaatc
tcaatcgaacgtcaaaattctgggtaatattcgattggttcgattgttgt
tcgactggttcgatcgtcaattccgttcaattgagatcgtctggctttag
tcttgcagcttcccaacatccaagctctcaaacatcacaagccgaatgaa
attacttttgttttcccgtagaaattatgcgatgaacaatccgggggtca
atgaatcgatgatcgaacgcaatcgaacatcaatcgaacgcgatcgaata
tcaatcaaatctgaaaattgcggtaatattcNATGCTATAtcatctcata
aaaccagatgtttttcaattttgaattgattttggtgagttcccccccat
gcctagaatgaaaattttccattcccccctcCCTCTTTCCCCCcccctgg
cttcaaaaaaaattctttcccccctatacgtccttttgacctcaaaaccc
attccccccctgaatccaggggggggaggacactatggggggtcaatgaa
tcgacgatggAATGCAATccaacgcaatcgaacatcaatcaaacgcaatc
gaatatcaatcgaatctgaaaattgcggtaatattcgattgagattcgat
tgcgttcgacaatcgaatttcaagcggtcgattgcgttcgatttggatcg
actggttcgatcgtcgattccgttcgattgattgagatcgtctggatagA
GCTGCCAGCGAAGCTGCAtaagttcatttgttttgaaatttttatttgaa
ttttattcaaTTCCATCCATCCCATCCTACGCTTCACCCACCatctttat
tttaattttgagcACACAagaattgaatttcaaaataaaacggaTATAAT
ATCCAACCCTTTCTTACCGTGAGTggatcagtggaggctaacatgcattg
ccctcaaatgaatgacctggctggtcattaaaattttttcattaatattc
taccatttttatttttatttaactttgtattttaatgaccagccaggaca
tttatttgagggctatgcatgttagcctccactgatgcaagttacccgat
ctcaccaTATGAGTTTGCAGGACGTGTTATCTCCCTAGTCACAAAAACAA
AGATACcacatttgaaaaaaagaggGATCGTATCGTAAAATCCAAGGGTC
GCAGAGACAGACTGTCTACATAATCACGGCAAAACACCCTgccatttatt
tttaatttccgATAGATTTGATTTCTGAAAAGTTTTTGGTGATTACCGAC
TCACAGACTCACTTTTTGGAGCCGAAaatgatttttgtgattttttttgc
aaataatgctacaatccttcaagaaatatttgagacaaatgggaaatttc
ccaggaagttttgaaaccaccatcgatttgtaagtgctctaaagtaggtt
cgaagggtagagttttaactctgagttttaacgctagacttaagacctta
ggatctttgGATCCGAAAGTTCAATAATGGTCTAGTAAGGCtccgaatat
agcctggaagtctgcctacccgtctcaaattgaaatattcgattcaatta
aagagatagcccaaaatcggctttttcgcccgaactttaaatctcgaaaa
acgTCAACATAACCGGAATTtcaatatatttcttgaaagattgtagaaat
gacaatGAAGTTTGGATGATACTTaagaatactatccactgatgaacTGT
GGCACTATGGTAAAGCTATGATCCATCTGTGTGTACTCTTTGCTTAAGAA
AATGATTCACATTGAGTTTTTTCACCTGTTGGGGAGTTCGGGGGCCCAAG
CCTCAAACCAAGTGTGCtgctttttaataatttcaatttacacTTGCATG
CTGTAGATCATTTTGACTCAATTCAGCATACTAAATTACTACAACTATTC
AGACTGGAAATTATCCGCTCCGTTTAGTTATGCAATATACCATCACGTTT
GCCTAAGGAGTATTctattttgagaattttctcTTCTTACCACTACTGTA
ACCCCTGGCCTAAGCTATACCAtatgtttgattgagattcaatcATGTTT
AACATGTCTTGTTTGATGAAAACTGATTGGAACAACAACAACACTGATTG
CAGTGGACCATCAATTGAAAACAGCTGAATTACTACTAgaatttccctaa
attttccCGTTGTAACTCTCTTGCCTTGGGTATTCAAATCTAACTCAACG
CATCTCAATCATTTGGTTTGATCACAGTATTCATTCAATTTAGAGCTGGT
AGTGTCTGGTTATTTATTTTCAGGGTAAACATGAACATATATGAGACAGG
TGGATTTGCACTTCAGAAATATAGGCTTTGATATGAATCTAAAAGCAACA
ACTTGATGGATTTTACCATTTTTATCTAAAtcttttaaatattcttttcc
TCTGTTCCACAGATAGCCGAACATCCGAATCATCAAAAATAAGAGCAAAA
TACCCTGACAGAATTCCagtaagtttttttcttcttaattttattaattt
attgttaaAAAGCACAGTGCTTGAAAGATTTCTAATAATTTGAGCTCATT
ATTCATTTAAATAAGatttgatttgagaaagcaGCATGTAGGAAGTTATA
GAAAATATTAATTGTTTCCTTTATCTAATTAACTAACTTCATTATGCAGT
GTTGACAGGTTCCAAAAGGTTGGATAACATTTTGGGAttggattttgaat
tttataattttttcctgtctCAAATACCACTTTCTCAGTTGGAAAAGACT
ATTTCTGCACATTTCTgaaagagcaaaaaaaacatatctttGTCATATGA
TAACagtttcgttttcaaaacatgTTTAATTAAGAAAACGGAAAACAAAG
CAAGAAAATTAATAGTTCGAACTAGCCAATATAATTCAATTTGTTCAGTA
TTCAAAGGTGttgaatattattttgaaatagcttttaTTGAAGGTGTCAA
AGCATTCTTTCTGTATGGTTTTGACACTCTTTAAAATCATAGGTAATcag
agttttttgttttttttaaacagtCTAGAATCATACTGAGTGTTTAATGG
AAAAACAtgattctgaaaaaaaagaaattgccttCACTTTTTTCCTTGTC
ATCAAGTTAGCCCTTCTTAGCTTTCACCAACTAAATACATTAAATCCCAA
TTaaaatgtataactttttttacacAGGTCGTTGTAGAGAAAGCTCCGCG
ATCAACTATTCAAGATATCGACAAGAGGAAGTTCCTCGTCCCTTCAGACC
TTACTGGTATGTTGGTTACACTTTTTCCATTTTGCCCTCGAATATAATAG
CAAAAATATAATCATAACCTCAAGTTGCAGTTTTATATACCgctttatcg
gcgatccaaaaaatatcagcaatctgattggttaaaaagagtacaatata
tcttatattttacatgtaaaaatataaattgacgaaaagatgttgtNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacatt
tgctcgtacaatatggaaatattttactcgttccggattttccgtatatt
ttcctcgcctaaaggctcggaaaatattgtacggaataatctcggaactc
gtaaaatatttctcatattgtactcgcaactgtccgataactattacgta
tTTACAGTCAGGGTTGAGAAAAATATAGGTCTATATTCAGGATTCTATTT
AGATATCCCGATCAACGACTTATGTCTGATTTCATTTCCTGTTCTTGAAA
ATATTATCTATTAAAACATTCTGAGCTGTGTTATCTGTATTATCTCATCC
atgattttgatctttttttcccTTATTATTTCAGTTGCACAATTCATGTA
CATTATTCGAAAACGCATCCAGCTTCCACCTGAGAAAGCTATGTTTTTAT
TCGTTAACAAAGTTCTACCAGCAACGAGGTAAGCCTGGACaagttttagt
tttgttttaattttgttcGTTTTTCTGGAGAAAATTTCAGTATCTCTAAA
TAGTTTTATTTTAGATGACCCTAATaaaaattcgatatttattaTTGGAT
TAACTTGCTTAGCTTCAGCTGATAAGCTTGATGAAGACATATCAtacccc
cccctttcttaaggggggatgacaccttccaaaaaagtgaagaaggggga
tcagaaattttcattgaaaagggggggggtagcaaggaggggggatcgtt
taagaagggggggggggcttacatataattgtagattattttccagcact
gttatgaaatttggtctgcatgaaaggaagttctttattttcactaaaaa
gtggtatatATATTGTATATTTGGTatatatttgccagacttaatttttc
tttactNgatatattgtagattattttccagcactgttatgaaatttggt
ctgcatgaaaggaagttctttattttcactaaaaagtggtattatatttg
ccagacctaatttttctttactgtttcccttccctttttaccatagaaaa
tttagcccaaaacccttgggggataggcatttttaaaggttggggggtca
tttaagaagggggggtcagacccctttccgcactatgcaTATTTCAACTG
CTTACGTGAGCTTGTTTGCTCAACTAGGAATTCCCCCATTTACGAGGGAA
ATTCCATCCGTTCATGTGTCAACGTCAGCGAAAGAATTGAATACTACAAC
AATCAGCAAGTATCGTACATGAATTGTGATTGAACACTGATGGACATTGA
GCTCATTGTATTGTTGGGTTTAGTTTAGTGACTGCTATTTCTGTGTTGAT
AATTCTCTTTGTTTACATGATTGCTTgggtaatcaaatttgtttgGCTTC
GTGCGCTGAAATACGTGTTCGTTATTTGTGTCAACGTCCTATTCATGATT
TGTTATTGATGTATTTTGCTTGTTCACATTTTTGAGATTCCCTTTATGAC
TATACCATATGTTCAACATGCGGCTTGTTGATCAGTGCGGTGTTGTCGAT
TTCATAGATATTCGGAAAAGAAAGATTTGGTTATtgaagaaaattaaaga
aagtcGCTGAGAGGGACTTTGGCGCGAAAAGTGGCTATCATTAGAGACTT
GTAAAGAACTTTCgaaacattgaaaaaatcaagtatGTCAAGTATGTCAT
ACCTAGCACTCTTTTCCTTTTTATCCTAAGCGCATCCCctcgaaaaaaat
aacgaaTCGATAAGTCAAATCAAGGAACTTAGTTCCTTTCTTAGTTAAAT
GCATTGGacttaaaatgaaaaagttttaatgtatttaatttttttttata
tagcGCCACCATGGGAGCTATTTATGAAGAACACAAAGACGAAGATGGCT
TTTTATACATCGCTTACAGCGGTGAAAACACCTTTGGAATGTAAACAAAT
CGCTTGTACCACTGGTCATGTATCATAACTCAACAATCCCAAAAGCTATA
TTtgttgttttgagaaaaaaaaattaccaactTAAATACAtttgtttgat
attttattttgcttttggTTCTCATACCGCCTTTATGACTgcggatgaaa
aaaaaatcttgtaaaaaatatttttttttgttatttttattgttaatttA
TATACTTGGAGAAAAATTTTACGGTATTATTAGGATTTCTAGATTTAAAA
AGTATCGTAAAATTTATGTTATAGGAGGTAATCAGagaaaagtaacaaaa
ataaagtttgacCCGAAAATTGAATACAGCATTGACGTAACTGTTTCGAA
ATTTGGATAGAATTGACAAATCCAAAGATATCGTTAATAAAAAGGagact
tttgtttttgtttgtttttctctgaTGACCTTACTCTTGCCTTGTAACAC
AACACTTTCGTCAACACACCAAAAAttgtagtaatatttttttgtcttgA
ACACGTGCGCACGCAGAAACTTgtcaaataataaaatggtTTTGTTTTGT
CATGATCCTTTAAACTCGTTTTTATGAtggttttttatttaaaatgatCC
TTGGTTACGTTAATAATACCAAaatgcaatagttttgacaaattttgaat
gcacttcactttcttttttacGTGTGCAATGTAAACGTagctttaaaata
ttcaataccttgtaaatacagatttaaaaaaagtttgataaaaaaatttg
acgttttaTGTTCAATGCTTATTAGCTGTACCTAACTACTGAGAGAAAGG
AAATAAAATTACTGAAAATCACAAACCAT

Coding sequence (CDS) from alignment at scaffold_276:684112..693590+

>TCONS_00056447 ID=TCONS_00056447|Name=TCONS_00056447|organism=Clytia hemisphaerica|type=CDS|length=3210bp|location=Sequence derived from alignment at scaffold_276:684112..693590+ (Clytia hemisphaerica)
CGAAAaccaaaattaactttttttaacaaTACGCCATCATTCTACACCCA
AAAACGCCATTCGTCGTTTGGCGAGTTGAATTCGCGTTTGGCGAGTGATT
TTGATAGCAACAACAAAGACGGCGAGTATTttcgcaaagcattgtgggac
gAAAACAACTTTTTAGATTCATTGCGTCACATCTGCagcagttttcaaaa
aaatttgctgCGTCAAGCGACTTGGACCAGCAGAACAAAATACAGAGACA
AGAGAGAAGAATCATTTTATCCACTCTACACTTTCAAAATGAAGTGGGCA
TTCAAGGAAGAACACTCTTTAGATAGCCGAACATCCGAATCATCAAAAAT
AAGAGCAAAATACCCTGACAGAATTCCaGTCGTTGTAGAGAAAGCTCCGC
GATCAACTATTCAAGATATCGACAAGAGGAAGTTCCTCGTCCCTTCAGAC
CTTACTGTTGCACAATTCATGTACATTATTCGAAAACGCATCCAGCTTCC
ACCTGAGAAAGCTATGTTTTTATTCGTTAACAAAGTTCTACCAGCAACGA
GcGCCACCATGGGAGCTATTTATGAAGAACACAAAGACGAAGATGGCTTT
TTATACATCGCTTACAGCGGTGAAAACACCTTTGGAATGTAACGAAAacc
aaaattaactttttttaacaaTACGCCATCATTCTACACCCAAAAACGCC
ATTCGTCGTTTGGCGAGTTGAATTCGCGTTTGGCGAGTGATTTTGATAGC
AACAACAAAGACGGCGAGTATTttcgcaaagcattgtgggacgAAAACAA
CTTTTTAGATTCATTGCGTCACATCTGCagcagttttcaaaaaaatttgc
tgCGTCAAGCGACTTGGACCAGCAGAACAAAATACAGAGACAAGAGAGAA
GAATCATTTTATCCACTCTACACTTTCAAAATGAAGTGGGCATTCAAGGA
AGAACACTCTTTAGATAGCCGAACATCCGAATCATCAAAAATAAGAGCAA
AATACCCTGACAGAATTCCaGTCGTTGTAGAGAAAGCTCCGCGATCAACT
ATTCAAGATATCGACAAGAGGAAGTTCCTCGTCCCTTCAGACCTTACTGT
TGCACAATTCATGTACATTATTCGAAAACGCATCCAGCTTCCACCTGAGA
AAGCTATGTTTTTATTCGTTAACAAAGTTCTACCAGCAACGAGcGCCACC
ATGGGAGCTATTTATGAAGAACACAAAGACGAAGATGGCTTTTTATACAT
CGCTTACAGCGGTGAAAACACCTTTGGAATGTAACGAAAaccaaaattaa
ctttttttaacaaTACGCCATCATTCTACACCCAAAAACGCCATTCGTCG
TTTGGCGAGTTGAATTCGCGTTTGGCGAGTGATTTTGATAGCAACAACAA
AGACGGCGAGTATTttcgcaaagcattgtgggacgAAAACAACTTTTTAG
ATTCATTGCGTCACATCTGCagcagttttcaaaaaaatttgctgCGTCAA
GCGACTTGGACCAGCAGAACAAAATACAGAGACAAGAGAGAAGAATCATT
TTATCCACTCTACACTTTCAAAATGAAGTGGGCATTCAAGGAAGAACACT
CTTTAGATAGCCGAACATCCGAATCATCAAAAATAAGAGCAAAATACCCT
GACAGAATTCCaGTCGTTGTAGAGAAAGCTCCGCGATCAACTATTCAAGA
TATCGACAAGAGGAAGTTCCTCGTCCCTTCAGACCTTACTGTTGCACAAT
TCATGTACATTATTCGAAAACGCATCCAGCTTCCACCTGAGAAAGCTATG
TTTTTATTCGTTAACAAAGTTCTACCAGCAACGAGcGCCACCATGGGAGC
TATTTATGAAGAACACAAAGACGAAGATGGCTTTTTATACATCGCTTACA
GCGGTGAAAACACCTTTGGAATGTAACGAAAaccaaaattaacttttttt
aacaaTACGCCATCATTCTACACCCAAAAACGCCATTCGTCGTTTGGCGA
GTTGAATTCGCGTTTGGCGAGTGATTTTGATAGCAACAACAAAGACGGCG
AGTATTttcgcaaagcattgtgggacgAAAACAACTTTTTAGATTCATTG
CGTCACATCTGCagcagttttcaaaaaaatttgctgCGTCAAGCGACTTG
GACCAGCAGAACAAAATACAGAGACAAGAGAGAAGAATCATTTTATCCAC
TCTACACTTTCAAAATGAAGTGGGCATTCAAGGAAGAACACTCTTTAGAT
AGCCGAACATCCGAATCATCAAAAATAAGAGCAAAATACCCTGACAGAAT
TCCaGTCGTTGTAGAGAAAGCTCCGCGATCAACTATTCAAGATATCGACA
AGAGGAAGTTCCTCGTCCCTTCAGACCTTACTGTTGCACAATTCATGTAC
ATTATTCGAAAACGCATCCAGCTTCCACCTGAGAAAGCTATGTTTTTATT
CGTTAACAAAGTTCTACCAGCAACGAGcGCCACCATGGGAGCTATTTATG
AAGAACACAAAGACGAAGATGGCTTTTTATACATCGCTTACAGCGGTGAA
AACACCTTTGGAATGTAACGAAAaccaaaattaactttttttaacaaTAC
GCCATCATTCTACACCCAAAAACGCCATTCGTCGTTTGGCGAGTTGAATT
CGCGTTTGGCGAGTGATTTTGATAGCAACAACAAAGACGGCGAGTATTtt
cgcaaagcattgtgggacgAAAACAACTTTTTAGATTCATTGCGTCACAT
CTGCagcagttttcaaaaaaatttgctgCGTCAAGCGACTTGGACCAGCA
GAACAAAATACAGAGACAAGAGAGAAGAATCATTTTATCCACTCTACACT
TTCAAAATGAAGTGGGCATTCAAGGAAGAACACTCTTTAGATAGCCGAAC
ATCCGAATCATCAAAAATAAGAGCAAAATACCCTGACAGAATTCCaGTCG
TTGTAGAGAAAGCTCCGCGATCAACTATTCAAGATATCGACAAGAGGAAG
TTCCTCGTCCCTTCAGACCTTACTGTTGCACAATTCATGTACATTATTCG
AAAACGCATCCAGCTTCCACCTGAGAAAGCTATGTTTTTATTCGTTAACA
AAGTTCTACCAGCAACGAGcGCCACCATGGGAGCTATTTATGAAGAACAC
AAAGACGAAGATGGCTTTTTATACATCGCTTACAGCGGTGAAAACACCTT
TGGAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035572XLOC_035572Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056447-proteinTCONS_00056447-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056447-exon-scaffold_276-1491911889:684112..684433TCONS_00056447-exon-scaffold_276-1491911889:684112..684433Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1510915933:684112..684433TCONS_00056447-exon-scaffold_276-1510915933:684112..684433Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1575043694:684112..684433TCONS_00056447-exon-scaffold_276-1575043694:684112..684433Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1491911889:689574..689629TCONS_00056447-exon-scaffold_276-1491911889:689574..689629Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1510915933:689574..689629TCONS_00056447-exon-scaffold_276-1510915933:689574..689629Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1575043694:689574..689629TCONS_00056447-exon-scaffold_276-1575043694:689574..689629Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1491911889:690339..690417TCONS_00056447-exon-scaffold_276-1491911889:690339..690417Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1510915933:690339..690417TCONS_00056447-exon-scaffold_276-1510915933:690339..690417Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1575043694:690339..690417TCONS_00056447-exon-scaffold_276-1575043694:690339..690417Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1491911889:691196..691289TCONS_00056447-exon-scaffold_276-1491911889:691196..691289Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1510915933:691196..691289TCONS_00056447-exon-scaffold_276-1510915933:691196..691289Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1575043694:691196..691289TCONS_00056447-exon-scaffold_276-1575043694:691196..691289Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1491911889:692665..693590TCONS_00056447-exon-scaffold_276-1491911889:692665..693590Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1510915933:692665..693590TCONS_00056447-exon-scaffold_276-1510915933:692665..693590Clytia hemisphaericaexon
TCONS_00056447-exon-scaffold_276-1575043694:692665..693590TCONS_00056447-exon-scaffold_276-1575043694:692665..693590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:684112..693590 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
275.428	289.431	406.576	441.503	244.69	186.499	252.414	277.897	217.527	176.221	189.441	173.968	158.653	145.921	94.6105	110.21	178.618	204.606	141.724	146.623	206.515	196.579	146.961	162.395	254.59	218.475	110.3	103.958	103.909	95.3628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
IPR029071Ubiquitin-rel_dom
Blast
[Close]
BLAST of TCONS_00056447 vs. Swiss-Prot (Human)
Match: GBRL2 (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.934e-57
Identity = 86/116 (74.14%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:  289 MKWAFKEEHSLDSRTSESSKIRAKYPDRIPVVVEKAPRSTIQDIDKRKFLVPSDLTVAQFMYIIRKRIQLPPEKAMFLFVNKVLPATSATMGAIYEEHKDEDGFLYIAYSGENTFG 636
            MKW FKE+HSL+ R  ES+KIRAKYPDR+PV+VEK   S I DIDKRK+LVPSD+TVAQFM+IIRKRIQLP EKA+FLFV+K +P +S TMG +YE+ KDEDGFLY+AYSGENTFG
Sbjct:    1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
The following BLAST results are available for this feature:
BLAST of TCONS_00056447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRL26.934e-5774.14Gamma-aminobutyric acid receptor-associated protei... [more]
back to top