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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056607 ID=TCONS_00056607|Name=TCONS_00056607|organism=Clytia hemisphaerica|type=transcript|length=4529bpRun BLAST on NCBI protein sequence of TCONS_00056607-protein >TCONS_00056607-protein ID=TCONS_00056607-protein|Name=TCONS_00056607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=994bp MEEQKIFGDVQTQQKFEIYYNHKENELDKKQQLIIERDERAVGEENNEEERun BLAST on NCBI transcript from alignment at scaffold_277:106771..133567- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056607 ID=TCONS_00056607|Name=TCONS_00056607|organism=Clytia hemisphaerica|type=transcript|length=26797bp|location=Sequence derived from alignment at scaffold_277:106771..133567- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_277:106771..133567- >TCONS_00056607 ID=TCONS_00056607|Name=TCONS_00056607|organism=Clytia hemisphaerica|type=CDS|length=32835bp|location=Sequence derived from alignment at scaffold_277:106771..133567- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056607 vs. Swiss-Prot (Human)
Match: ZN347 (Zinc finger protein 347 OS=Homo sapiens GN=ZNF347 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 9.399e-27 Identity = 72/207 (34.78%), Postives = 99/207 (47.83%), Query Frame = 2
Query: 2306 LVVQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVHESTPGFVPSLPAIRPRQEEXXXXXXXXXVISPTXXXXXXXXXXXXXKTAVPVFSSAAGNVMIMGNKKKSEAKFPCNKCGKVFTRKSHLTRHKLTHDQIKIY-CD-CGRLFRQKAHLQAH 2920
LV+ EK + C C +VF SHL RH +IH+GEKP+ C C K F S+L H + HTGEKP+KC CGK F NS L H+++H ++ + A V+SS + +I E + CN+CGKVFT+ SHL RH+ H K Y C+ CG++FR ++L H
Sbjct: 448 LVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECG-----------------------------------KAFSVYSSLTTHQVI----HTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRH 615 HSP 2 Score: 107.842 bits (268), Expect = 1.785e-23 Identity = 73/207 (35.27%), Postives = 98/207 (47.34%), Query Frame = 2
Query: 2309 VVQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVHES-TPGFVPSLPAIRPRQEEXXXXXXXXXVISPTXXXXXXXXXXXXXKTAVPVFSSAAGNVMIMGNKKKSEAKFPCNKCGKVFTRKSHLTRHKLTHDQIKIY-CD-CGRLFRQKAHLQAH 2920
V+ EK + C C +VF+ S L +H IH+GEKP+ C C K F + SHL RH HTGEKP+KC CGK F S L H+ H P + + + P + A V SS A +++I E + C++CGKVF R SHL RH+L H K Y C+ CG+ FR ++L H
Sbjct: 309 VIHTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPYKCNECGK--------AFGVRSSLAIHLVI----HTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTH 503 HSP 3 Score: 101.679 bits (252), Expect = 1.485e-21 Identity = 84/242 (34.71%), Postives = 106/242 (43.80%), Query Frame = 2
Query: 2309 VVQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHV----------------------------LTHTGEKPFKCPYCGKGFADNSDLKRHKQVHESTPGFVPSLPAIRPRQEEXXXXXXXXXVISPTXXXXXXXXXXXXXK--------TAVPVFSSAAGNVMIMGNKKKSEAKFPCNKCGKVFTRKSHLTRHKLTHDQIKIY-CD-CGRLFRQKAHLQAH 2920
V+ EK + C C +VF SHL RH IH+GEKP+ C C K F S+L+RH + HTGEKP+KC CGK F NS L RH++VH T G +P Q + S TS H+ K A V SS + I KK + CN+CGKVFT+ SHL RH+ H K Y C+ CG+ F Q + L H
Sbjct: 561 VIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVH--TGG--------KPYQ-----CNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK----PYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKAFSQTSKLARH 783 HSP 4 Score: 93.9745 bits (232), Expect = 3.247e-19 Identity = 67/206 (32.52%), Postives = 87/206 (42.23%), Query Frame = 2
Query: 2312 VQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVHES-TPGFVPSLPAIRPRQEEXXXXXXXXXVISPTXXXXXXXXXXXXXKTAVPVFSSAAGNVMIMGNKKKSEAKFPCNKCGKVFTRKSHLTRHKLTHDQIKIYC--DCGRLFRQKAHLQAH 2920
+ EK + C C + F RS L H HSGEKP+ C C K F + SHL H HTGEKP+KC CGK F S L H +H P + R A P + A S+ + +I E + CN+CGKVFT+ SHL H+ H +K Y +CG+ F + L H
Sbjct: 366 IHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGK--------AFRAHSNLTTHQVI----HTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTH 559 HSP 5 Score: 91.6633 bits (226), Expect = 1.997e-18 Identity = 65/202 (32.18%), Postives = 92/202 (45.54%), Query Frame = 2
Query: 2327 KEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVHESTPGFVPSLPAIRPRQEEXXXXXXXXXVISPTXXXXXXXXXXXXXKTAVPVFSSAAGNVMIMGNKKKSEAKFP--CNKCGKVFTRKSHLTRHKLTHDQIKIY-CD-CGRLFRQKAHLQAH 2920
K + C C + F+ S L H +IH+GEKP+ C C K F + SHL RH HTGEKP+KC CGK F NS L RH+++H +P + + T VF+ N + +++ P CN+CGK F++ S L RH+ H K Y C+ CG+ F ++ L H
Sbjct: 539 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE----------KPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQ---NSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTH 727 HSP 6 Score: 88.1965 bits (217), Expect = 1.945e-17 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 2
Query: 2312 VQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVH 2569
V EK + C C + F+ RS L H IH+G+KP+ C C K F + SHL RH HTGEKP+KC CGK F+ S L RH+++H
Sbjct: 702 VHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKAFSQTSKLARHQRIH 787 HSP 7 Score: 88.1965 bits (217), Expect = 2.287e-17 Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 2
Query: 2294 GHSSL----VVQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVH 2569
HS+L V+ EK + C C +VF SHL H IH+G KP+ C C K F+ S L H + HTGEKP+KC CGK F NS L RH+ +H
Sbjct: 496 AHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIH 591 HSP 8 Score: 86.2705 bits (212), Expect = 8.209e-17 Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 2
Query: 2297 HSSL----VVQEREKEFPCPTCRRVFNNRSHLKRHNMIHSGEKPWACTYCDKRFNRKSHLNRHVLTHTGEKPFKCPYCGKGFADNSDLKRHKQVH 2569
HS+L V+ EK + C C +VF SHL RH +H+G KP+ C C K F++ S L RH HTGEKP++C CGK F+ S L H+ +H
Sbjct: 637 HSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIH 731 The following BLAST results are available for this feature:
BLAST of TCONS_00056607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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