TCONS_00056564 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056564
Unique Name	TCONS_00056564
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1301

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_277:192109..195991+
coding sequence from alignment at scaffold_277:192109..195991+

transcript sequence

>TCONS_00056564 ID=TCONS_00056564|Name=TCONS_00056564|organism=Clytia hemisphaerica|type=transcript|length=1301bp
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
CATAATGATTTAGTGCAATGATCTACGCCATATATATACCCGGTCTCGAA
CTGGGTTCTGGgtcaacttttttgaaaatttgtgtttttaacATTAATAA
TGTAACTTGTCCTTTGTTGTTTGTCTTtttacaatgctggacaaaaggtt
tgtagacttctgcaatatttgcaaaatacttcaatatcgatcaaaaacaa
gttcccaagaggctctgggtgctttccaaacctatccaaagtctttcaaa
gtctttcaaagtcttttttacttgtttgttttgtctgttGTTTAACCTTT
TTGTGGTCTTGACTTGGTACGAGtatgtttctttgtatttgtgtgcgAGT
CTATGCATCTTTGttatgtttgttagtttgtttggtccagggttatggaa
tctaggggaggctgagtgttggacgtccttaaaacatgtCTAAAGCCGCT
GCACCTGTCGCAAGTTGGGGACGCGTCGGGGACTCTAGATTACATTATAT
TTTTGTTGGgctttttggtagtttttagtGTTTATATTTTTGTGATTGTT
GTGTTTATGTTTCTGCTtagctttttaaactttatatctattgttttgtt
ggttaactctttttttcgcataaaattctcatttcttgacataatatttg
attggtttgatttatatatttagaaaaattcaaataaataatagaaaaaa
a

Run BLAST on NCBI

protein sequence of TCONS_00056564-protein

>TCONS_00056564-protein ID=TCONS_00056564-protein|Name=TCONS_00056564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
ISVRIAKMSSSMLILVTLICTATLSIAYPFNHKDSERVVKKDGQSAFDEE
RMHGPTEKEAVLDQGVVMKDGQSAFDEEQMRGPPEKEAVLDQFMDKRKIT
SQQEPPEKEAVLDQLEDAFKVGNWQRIGDELEKRNWLRPGDEFEKRNWPR
PGDELEKRNWPRPGDELEKRNWPRPGDELEKRNWPRPGDKPEKNHDYLG

Run BLAST on NCBI

transcript from alignment at scaffold_277:192109..195991+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056564 ID=TCONS_00056564|Name=TCONS_00056564|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
TATGTATTATAGTTGACGATCAAAAACAAGAATATCCCAGTAAATTTAAC
CTAATTACAGATGGtcataatttttcttaaaggttttgttttttaaataa
gagtgatatcgtttgcttactcatcacttttaattcacaagctttttcac
attgaattgacacggatgatcggatgtggagcaagattggtcaaaaaaag
GAGAAGAAAAGTACTTTTTTGTATAtgtcagcacaatataacaaaaggta
gacactgtcctgatatgaaatatgtgtctgatatgaaacgggaacactta
tgtaaaaatgaaacctttaagCACACGGTAAACCTCTGTACCTCTGTATA
AAGCActgatttataaagcccaaatggctagatggcgtgctttagctgaa
aagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgacattac
attAGAATTTTAGCGCTTGACCAATAGAAACtacgcgggttttcgaaaaa
caatagcaacaatttGCTTTGCTAAAAGCGCAacttacagaaatctgtgg
cgcttgaaaattatccATCTGAGGAATATAGCCACTTTCATAACAAGAAT
CTTATGACGTGCCACGATCTTTTTTCTGATACGGTGAACTATTTTCCGAT
ACAATCACGCAATtctgttgtcattcccagtcctttgaAACGAGCACGGT
CCTTACGAACCCAAGATGGCATATTTGTCAGATCgcttgttttcacacat
ccctttagaacTTTAGCGTTGTTTgcagaaaacaatgaaaatctatctga
tctcaggttaactAAATTTTACTCACAAGTACCTAAAAACTGTCACATAA
CTTGAAATTTAGTCTTTTCACCAAACTGGATCCGCTTATTAAATTATACT
AAGAGCATAAATTGCATCCaagaattattttaaagtttATGTCAAGTATA
TTTGGGTACACTCACTgagtagtctgaatcgcagacctctatagaaatac
ttctataagaaacttttttcgctagaggatgagcagaagcctactcATTG
AGGTATCAAGATCACATCGACAGGACTAGATATAATTTTACTTGCACACC
AGAGATGTAAAGCCATTTGCCTTTAGGCAAAGTTTTAacactacaatgac
ttctttgcgggcaataattacaaaaaaactccgatcaaagatggcggata
tagcttcgTCCAAGGTCGATAAAGGTTAGTAGGTATAATTTACAGATGAT
CTTTTTAATTCTCATAGGATAGCGAAAGAGTGGTTAAGAAGGATGGACAA
TCAGCTTTTGATGAAGAGCGCATGCATGGGCCGACAGAGAAAGAAGCAGT
GCTCGATCAAGGAGTTGTTATGAAGGATGGACAATCAGCTTTTGATGAAG
AGCAAATGCGTGGTCCACCAGAAAAAGAAGCAGTTCTTGATCAATTTATG
GTGAGCTTTCTTTAAGCTATTTGTTTAACTATAATAAATActgaaaaatg
tcaatatgtTTCTGGCTTAATTTTTTTAGGCAGCTGGCATCCACTAAAAG
ATTCGTACTCCTTATCGTACCTATAGTACTTGAACTACCTGCTATTTTGT
CCTATCCAGATACACTCGTTTTTATAactaaaggcttcaaaaatgccaaa
aaatgctaaaaaataagaactAATGAGCATGGAATTTCTGTTAGTAATTA
GTAATTTGTATAAAGCACCAAATACCTGTATTTTGCCCTCTACTTAAAAA
AATGAATCCTTTTacaatcaaaaatctttttcctcCACATAGGATAAAAG
AAAGATTACTAGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATC
AATTAGAGGTGAGATTAttttaagccccccccccccccctccccccaaaa
aaaaaaaaaaatccccaTTAATTAGAGGTTGGGTTTttttaagccccccc
cccccctcatctgcgaaaagaaataaatttttacaaaatcagCTTTTCGT
CCTTGAAAGCTCTTTTCCAAATTATAAatagtctgtacacagacccgata
tctacgtctaatttcaaaattcattgccgtagaggatCTGTTTattattg
tcttttctcatttgagatttttcaaaccgacagCTGCGATGGAGTGCGGG
TGAGAGAAGAGAGATAATAGGAGGGGTGTTTGAAATCTtctagacttaaa
actttccctCTACAGGGGCTTTCATTCTTtccaatattttgatttattgt
TTAGGATGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcg
aaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattgg
cCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGA
TgaactcgaaaaaaaaaattggccaagACCAGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC
GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa
aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA
GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA
ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa
ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG
GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA
AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC
AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA
AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA
TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact
tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT
GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg
gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt
tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT
ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg
tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg
ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG
GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg
tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt
agctttttaaactttatatctattgttttgttggttaactctttttttcg
cataaaattctcatttcttgacataatatttgattggtttgatttatata
tttagaaaaattcaaataaataatagaaaaaaa

Coding sequence (CDS) from alignment at scaffold_277:192109..195991+

>TCONS_00056564 ID=TCONS_00056564|Name=TCONS_00056564|organism=Clytia hemisphaerica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGACCTGGTGATGAActcgaaaaaagaaatt
ggcCAAGGCCAGGCGATAAACCCGAAAAAAATCATGATTATCTTGGATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035643	XLOC_035643	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056564-protein	TCONS_00056564-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_277	supercontig	scaffold_277:192109..195991 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.661953	1.29767	0.336942	1.44463	4.98849	1.70244	2.37502	1.67117	0.521318	0	0.14404	0.562419	0.422095	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00056564 vs. Swiss-Prot (Human)

BLAST of TCONS_00056564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00056564 (transcript) - C. hemisphaerica