TCONS_00056568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056568
Unique NameTCONS_00056568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056568 ID=TCONS_00056568|Name=TCONS_00056568|organism=Clytia hemisphaerica|type=transcript|length=1733bp
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC
GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa
aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA
GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA
ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa
ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG
GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA
AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC
AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA
AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA
TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact
tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT
GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg
gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt
tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT
ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg
tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg
ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG
GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg
tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt
agctttttaaactttatatctattgttttgttggttaactctttttttcg
cataaaattctcatttcttgacataatatttgattggtttgatttatata
tttagaaaaattcaaataaataatagaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_277:192109..195991+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056568 ID=TCONS_00056568|Name=TCONS_00056568|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG TATGTATTATAGTTGACGATCAAAAACAAGAATATCCCAGTAAATTTAAC CTAATTACAGATGGtcataatttttcttaaaggttttgttttttaaataa gagtgatatcgtttgcttactcatcacttttaattcacaagctttttcac attgaattgacacggatgatcggatgtggagcaagattggtcaaaaaaag GAGAAGAAAAGTACTTTTTTGTATAtgtcagcacaatataacaaaaggta gacactgtcctgatatgaaatatgtgtctgatatgaaacgggaacactta tgtaaaaatgaaacctttaagCACACGGTAAACCTCTGTACCTCTGTATA AAGCActgatttataaagcccaaatggctagatggcgtgctttagctgaa aagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgacattac attAGAATTTTAGCGCTTGACCAATAGAAACtacgcgggttttcgaaaaa caatagcaacaatttGCTTTGCTAAAAGCGCAacttacagaaatctgtgg cgcttgaaaattatccATCTGAGGAATATAGCCACTTTCATAACAAGAAT CTTATGACGTGCCACGATCTTTTTTCTGATACGGTGAACTATTTTCCGAT ACAATCACGCAATtctgttgtcattcccagtcctttgaAACGAGCACGGT CCTTACGAACCCAAGATGGCATATTTGTCAGATCgcttgttttcacacat ccctttagaacTTTAGCGTTGTTTgcagaaaacaatgaaaatctatctga tctcaggttaactAAATTTTACTCACAAGTACCTAAAAACTGTCACATAA CTTGAAATTTAGTCTTTTCACCAAACTGGATCCGCTTATTAAATTATACT AAGAGCATAAATTGCATCCaagaattattttaaagtttATGTCAAGTATA TTTGGGTACACTCACTgagtagtctgaatcgcagacctctatagaaatac ttctataagaaacttttttcgctagaggatgagcagaagcctactcATTG AGGTATCAAGATCACATCGACAGGACTAGATATAATTTTACTTGCACACC AGAGATGTAAAGCCATTTGCCTTTAGGCAAAGTTTTAacactacaatgac ttctttgcgggcaataattacaaaaaaactccgatcaaagatggcggata tagcttcgTCCAAGGTCGATAAAGGTTAGTAGGTATAATTTACAGATGAT CTTTTTAATTCTCATAGGATAGCGAAAGAGTGGTTAAGAAGGATGGACAA TCAGCTTTTGATGAAGAGCGCATGCATGGGCCGACAGAGAAAGAAGCAGT GCTCGATCAAGGAGTTGTTATGAAGGATGGACAATCAGCTTTTGATGAAG AGCAAATGCGTGGTCCACCAGAAAAAGAAGCAGTTCTTGATCAATTTATG GTGAGCTTTCTTTAAGCTATTTGTTTAACTATAATAAATActgaaaaatg tcaatatgtTTCTGGCTTAATTTTTTTAGGCAGCTGGCATCCACTAAAAG ATTCGTACTCCTTATCGTACCTATAGTACTTGAACTACCTGCTATTTTGT CCTATCCAGATACACTCGTTTTTATAactaaaggcttcaaaaatgccaaa aaatgctaaaaaataagaactAATGAGCATGGAATTTCTGTTAGTAATTA GTAATTTGTATAAAGCACCAAATACCTGTATTTTGCCCTCTACTTAAAAA AATGAATCCTTTTacaatcaaaaatctttttcctcCACATAGGATAAAAG AAAGATTACTAGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATC AATTAGAGGTGAGATTAttttaagccccccccccccccctccccccaaaa aaaaaaaaaaatccccaTTAATTAGAGGTTGGGTTTttttaagccccccc cccccctcatctgcgaaaagaaataaatttttacaaaatcagCTTTTCGT CCTTGAAAGCTCTTTTCCAAATTATAAatagtctgtacacagacccgata tctacgtctaatttcaaaattcattgccgtagaggatCTGTTTattattg tcttttctcatttgagatttttcaaaccgacagCTGCGATGGAGTGCGGG TGAGAGAAGAGAGATAATAGGAGGGGTGTTTGAAATCTtctagacttaaa actttccctCTACAGGGGCTTTCATTCTTtccaatattttgatttattgt TTAGGATGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcg aaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattgg cCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGA TgaactcgaaaaaaaaaattggccaagACCAGGCGATGaactagaaaaaa gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt agctttttaaactttatatctattgttttgttggttaactctttttttcg cataaaattctcatttcttgacataatatttgattggtttgatttatata tttagaaaaattcaaataaataatagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035643XLOC_035643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056568-exon-scaffold_277-1491911889:192109..192207TCONS_00056568-exon-scaffold_277-1491911889:192109..192207Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1510915933:192109..192207TCONS_00056568-exon-scaffold_277-1510915933:192109..192207Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1575043694:192109..192207TCONS_00056568-exon-scaffold_277-1575043694:192109..192207Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1491911889:193476..193658TCONS_00056568-exon-scaffold_277-1491911889:193476..193658Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1510915933:193476..193658TCONS_00056568-exon-scaffold_277-1510915933:193476..193658Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1575043694:193476..193658TCONS_00056568-exon-scaffold_277-1575043694:193476..193658Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1491911889:194001..194066TCONS_00056568-exon-scaffold_277-1491911889:194001..194066Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1510915933:194001..194066TCONS_00056568-exon-scaffold_277-1510915933:194001..194066Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1575043694:194001..194066TCONS_00056568-exon-scaffold_277-1575043694:194001..194066Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1491911889:194463..194496TCONS_00056568-exon-scaffold_277-1491911889:194463..194496Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1510915933:194463..194496TCONS_00056568-exon-scaffold_277-1510915933:194463..194496Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1575043694:194463..194496TCONS_00056568-exon-scaffold_277-1575043694:194463..194496Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1491911889:194641..195991TCONS_00056568-exon-scaffold_277-1491911889:194641..195991Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1510915933:194641..195991TCONS_00056568-exon-scaffold_277-1510915933:194641..195991Clytia hemisphaericaexon
TCONS_00056568-exon-scaffold_277-1575043694:194641..195991TCONS_00056568-exon-scaffold_277-1575043694:194641..195991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:192109..195991 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (7.6562e-10 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 7.6562e-10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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