TCONS_00056992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056992
Unique NameTCONS_00056992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056992 ID=TCONS_00056992|Name=TCONS_00056992|organism=Clytia hemisphaerica|type=transcript|length=410bp
TTAttaatgctgaatcagcagataCTCCAAATGTTGTCCATGTATCACCG
AGGAGAGAGAAAGGGGAGCAAAGAAACAGATGTGAGCTAAATATCGAAAT
GGAAGAAGTTCATATAAATGAAGGTGTAGACGAAACcgataaaaagacac
aaaataaACTCGATGCTTTGGTATGAGTTGCTAGAtatatttttccaata
ttttttccaaaatcaccaGATTTTATGAACCTTTGAGTGATTCGATTTCA
ATATTTCGTAATTTTAGGGCCCTTTCTAATTTATCGTTTTTGTACCCcct
tgagagactttcgagggtttaaataaaccagctgcgctggaaggtcagcc
caataagcttaaaaTGATTAGAAGAaagtacaatcaagaaacctaGTTTG
ATGTTAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_284:39203..39612

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056992 ID=TCONS_00056992|Name=TCONS_00056992|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_284:39203..39612 (Clytia hemisphaerica)
GCTTTAACATCAAACtaggtttcttgattgtacttTCTTCTAATCAtttt aagcttattgggctgaccttccagcgcagctggtttatttaaaccctcga aagtctctcaaggGGGTACAAAAACGATAAATTAGAAAGGGCCCTAAAAT TACGAAATATTGAAATCGAATCACTCAAAGGTTCATAAAATCtggtgatt ttggaaaaaatattggaaaaatataTCTAGCAACTCATACCAAAGCATCG AGTttattttgtgtctttttatcgGTTTCGTCTACACCTTCATTTATATG AACTTCTTCCATTTCGATATTTAGCTCACATCTGTTTCTTTGCTCCCCTT TCTCTCTCCTCGGTGATACATGGACAACATTTGGAGtatctgctgattca gcattaaTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035889XLOC_035889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056992-exon-scaffold_284-1491911889:39203..39612TCONS_00056992-exon-scaffold_284-1491911889:39203..39612Clytia hemisphaericaexon
TCONS_00056992-exon-scaffold_284-1510915933:39203..39612TCONS_00056992-exon-scaffold_284-1510915933:39203..39612Clytia hemisphaericaexon
TCONS_00056992-exon-scaffold_284-1575043694:39203..39612TCONS_00056992-exon-scaffold_284-1575043694:39203..39612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:39203..39612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (8.75753 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.529519 0.516364 0.599548 0.403943 0.952114 0 0.907706 1.48712 1.9336 3.73799 1.25177 0.959854 3.24901 1.89707 2.50565 3.01279 1.56889 2.00664 3.94023 1.76707 1.7181 1.8373 1.82141 2.08152 0 1.18391 8.75753 7.26986 1.38913 0.644424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400Sequence
Match NameE-valueIdentityDescription
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