TCONS_00056992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056992
Unique NameTCONS_00056992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056992 ID=TCONS_00056992|Name=TCONS_00056992|organism=Clytia hemisphaerica|type=transcript|length=410bp
TTAttaatgctgaatcagcagataCTCCAAATGTTGTCCATGTATCACCG
AGGAGAGAGAAAGGGGAGCAAAGAAACAGATGTGAGCTAAATATCGAAAT
GGAAGAAGTTCATATAAATGAAGGTGTAGACGAAACcgataaaaagacac
aaaataaACTCGATGCTTTGGTATGAGTTGCTAGAtatatttttccaata
ttttttccaaaatcaccaGATTTTATGAACCTTTGAGTGATTCGATTTCA
ATATTTCGTAATTTTAGGGCCCTTTCTAATTTATCGTTTTTGTACCCcct
tgagagactttcgagggtttaaataaaccagctgcgctggaaggtcagcc
caataagcttaaaaTGATTAGAAGAaagtacaatcaagaaacctaGTTTG
ATGTTAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_284:39203..39612

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056992 ID=TCONS_00056992|Name=TCONS_00056992|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_284:39203..39612 (Clytia hemisphaerica)
GCTTTAACATCAAACtaggtttcttgattgtacttTCTTCTAATCAtttt
aagcttattgggctgaccttccagcgcagctggtttatttaaaccctcga
aagtctctcaaggGGGTACAAAAACGATAAATTAGAAAGGGCCCTAAAAT
TACGAAATATTGAAATCGAATCACTCAAAGGTTCATAAAATCtggtgatt
ttggaaaaaatattggaaaaatataTCTAGCAACTCATACCAAAGCATCG
AGTttattttgtgtctttttatcgGTTTCGTCTACACCTTCATTTATATG
AACTTCTTCCATTTCGATATTTAGCTCACATCTGTTTCTTTGCTCCCCTT
TCTCTCTCCTCGGTGATACATGGACAACATTTGGAGtatctgctgattca
gcattaaTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035889XLOC_035889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056992-exon-scaffold_284-1491911889:39203..39612TCONS_00056992-exon-scaffold_284-1491911889:39203..39612Clytia hemisphaericaexon
TCONS_00056992-exon-scaffold_284-1510915933:39203..39612TCONS_00056992-exon-scaffold_284-1510915933:39203..39612Clytia hemisphaericaexon
TCONS_00056992-exon-scaffold_284-1575043694:39203..39612TCONS_00056992-exon-scaffold_284-1575043694:39203..39612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:39203..39612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.529519	0.516364	0.599548	0.403943	0.952114	0	0.907706	1.48712	1.9336	3.73799	1.25177	0.959854	3.24901	1.89707	2.50565	3.01279	1.56889	2.00664	3.94023	1.76707	1.7181	1.8373	1.82141	2.08152	0	1.18391	8.75753	7.26986	1.38913	0.644424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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