TCONS_00056975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056975
Unique NameTCONS_00056975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056975 ID=TCONS_00056975|Name=TCONS_00056975|organism=Clytia hemisphaerica|type=transcript|length=2384bp
NTGTTTTGTAACTGCCACAAATATGTATTtatttttgtcaagatattTTC
GACGCTAATATTCTGTCTACAAGTGCAAGcaGGTAATGTTGACGCATTGG
AGAAAGTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGTAC
CTACCAAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTACGG
ATCATGGAAATATGTTGAATCTCATCAACAGATCTTCTTCAATCAGAATC
CTAAACCGTCTATCAATCTCATCGACCTGATTGTGTTTTTTGACCAATCA
TTTGACGAACAGATACCAGTTGATTGCCAAATTTTCCGTTACCATGGAAA
AGAGGCTACTCGTCACCAACTCTTACAAAACGACGCTACCTTGAATTCAT
TCGTcgataaaaacaacaacaaagatGCTTCCGAATTTCGTCTTCAACTT
GATCAGCTGAAGAATACAAATCATACGAAAACACGGATTTCCGAAGATGA
AATCATGTTTCGGTCAGCTTGTTGGAGAATACCTCAATCGAACAATACGT
TCAAAGATGGATTCTCTTCATTGGATAATCTCTTACCGTTTCTTAGAGAA
GGTATCGACGAAATGTTTGAGGAATATCAATATATTCTCAATGTAGACAC
TGATTCGATACTGACACCAGGGCTATGGACCCTCAATCTTAATCAAGTGG
TCCTCGCATCTGGTGTTCAACAAGAATGCCCTGCAGATCGTAAATTATTA
ACCTTACAAGCTGCAACGAAAATTGGTTTAGAGTTTCCCCTAGGTAGACC
TTGGAcaacattttcaatatttggtGAAACCAATATCATCCTGCCATTTA
TGTTTGAGGTTTACCGACTTTCTGTTTTCCTTATGCATGATGACTTGAAT
GAATGGAATGCAAAACACGAAGAACAATCACATAAACAGTTGCAAATAGC
TAAAGACCTTGTAATATATCAAGCAGCAAAGATGTTACAGATTGAAAATA
AAGGAAGGTTTCGCATTCTAGATTCATTGCCGTGTTCCAGAAGCCATCAA
AAAGGTACACGAAGTGTTCTGAGCATTTCTGTAAAGAAGGACCATAAATG
TCGTTTCGATAAAAGTCAATTCTTTAACCTTCTCGCGAATCTTCAAACGA
TGACCCCGGgagagaaaaaagattttttaagccATGCTAAAGAAGAATGG
AATCACGAGCAAGCCTCAAAACTGAATCTTGAAAACTATGCCAAATTTAT
CGCGTATAAGTATGCAGCGATTCATTTTAGTgagatctttaaattctgaT
TGCAGTCTCTGATCATCGTCGAAATTTTCCTATTCCCAAGTtaagcaata
tttttttaactcaaaaatATTCTGACGATAACATAATGTGTCATTTTTGC
GCCAGTATGGTAAGTGGCCTAGCTACAACTTGCACTTTTTTTGCCTGCAG
ATATcgttaaaaaaaagattcaaagtatgaaaaatattggtGGTGAACCA
CAGTAACACGGGCCCCTAACACCATTGTGTCGCAGACCCCCTGGGCccta
gccccactggaaaatttcgtccccggtagaaAAATACGTTGGAATTCACT
GGGAAATTGTATTTGagttcatccccattcgaaatctaatgtttaaaaat
tacactccaaaaccaATCGCACTggtttttttaaccttggaacaatggaa
tttctatccccattggggtTTCAATTTTATCcacactgaggaaaaaagtt
ccaccgggactgtgagacaCGGTTGTGCATTACCAAGGGCATCAAAAGGC
TCCATAAACCTCCTTCACAGTGCAAAGGTGGGTTTGATGAAAGGTATTCA
AATTGATGAAGGACCATTCGCAGGTTCGCATAATGGAAAGGCTTATACCG
GTTTATACTGTATTAGGTTCGAACAATCTTTTACTCAATCAAGGTGCTTT
AGTCATTTTAAACTATTTCAGATTATTGAAAATAAGCATTATTAATGACT
TTCAGCCTCGTTTAGAGGGTCCCCAATTCCACAGTGCcgtcaaatatttc
ttgatttCTCAAGAAATTGTCGAATTCTTTTATTCAAATAGATTGGTTTT
GAGTAGAAATTAGttattgattttcatttttgaaaccCCTTTTTTTAGAC
TTTTGGGGCTCATGACGTAAATTTATGTATTGTCTCTATGTAAATAATAA
AGAAACGGAGAATACTTTTTcggattatttttttaataaattcacacata
ttacacgttttttataagaacataaggcttcgctggcataaatgttaaga
acaagttaagaacatttaaaggctttgcggactcaaaAATACGctatttt
tttaggaaaatggtcaaaaatatttacaaaatag
Run BLAST on NCBI

transcript from alignment at scaffold_284:1341205..1344450-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056975 ID=TCONS_00056975|Name=TCONS_00056975|organism=Clytia hemisphaerica|type=transcript|length=3246bp|location=Sequence derived from alignment at scaffold_284:1341205..1344450- (Clytia hemisphaerica)
NTGTTTTGTAACTGCCACAAATATGTATTTATTTTTGTCAAGATATTTTC GACGCTAATATTCTGTCTACAAGTGCAAGGTATACAGTTGTCAACGTTCT ACCTTCTAGAGGCTGCAACTTTTAATGTGATAGTTTAGCCTTTTACTTAG GCAAATTGGGTGCTGTGTATGTGCGAGTCATAAGGGTCCCTTTTTCAAAT GCTCGAAAGTCCCTCAATGGGTTACAAAACCAAAAAAAAGACAATTGAGT CTCTTTAAGGGTCTAAAATCGAAATTTCCTCTCCCAAAGGGTCATGATTT TCCAAAATTTGGACAAAAAACGAGCGAAAATGGACAAAAATTGTCAAAAA CGTCGAAATTCAGTCTTTCAAAGGGTTGATTTTCGATTTTTGGCTCGAAT ATACCCGTCACCTCGCAAACTTAGTAGCCCCCGCCCGGGGCGGGCTTAAA GTGAACGACATGACTTTAATACCTTCTTAAAATCCCTTTGTAAATATTTT TCCAGATACTTGTCTTTTTTTTTTAATTTAGCAGGTAATGTTGACGCATT GGAGAAAGTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGT ACCTACCAAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTAC GGATCATGGAAATATGTTGAATCTCATCAACAGGTTGAATTTGCGCGCTT TTCTGGAATTCTTGATTAGGATATTACTAGTAGAGTGGAGTTTCCTTAAT TGGAACCTCTATAATTCAAATGCCTCCTTAAAACAAGTTTTATATTTTCT TCAGTTAACAATGTCTTTTAAACCTAACTCCATAACTCGCAATCTCCGTA ACTCGATCATCGACTGCGTGTTTGAGCATCGATGGCTCGAGTTACGGAGA CTCTGTAAAAGATTGCAAAAGTGTAACACTCTTTTTATCGCATACTTTAG ACTATAACTAGAAAACTGTATAGGGGAATGAATATACCATCAGAGATAGC AGGCTCTCAATTCAATTCTAAAACCAAACCAACTAAAAAAAGTGAGACAA CTTTATGTTATACTTAAACCATTTTGATTCTCTCTCTTTGCAGATCTTCT TCAATCAGAATCCTAAACCGTCTATCAATCTCATCGACCTGATTGTGTTT TTTGACCAATCATTTGACGAACAGATACCAGTTGATTGCCAAATTTTCCG TTACCATGGAAAAGAGGCTACTCGTCACCAACTCTTACAAAACGACGCTA CCTTGAATTCATTCGTCGATAAAAACAACAACAAAGATGCTTCCGAATTT CGTCTTCAACTTGATCAGCTGAAGAATACAAATCATACGAAAACACGGAT TTCCGAAGATGAAATCATGTTTCGGTCAGCTTGTTGGAGAATACCTCAAT CGAACAATACGTTCAAAGATGGATTCTCTTCATTGGATAATCTCTTACCG TTTCTTAGAGAAGGTATCGACGAAATGTTTGAGGAATATCAATATATTCT CAATGTAGACACTGATTCGATACTGACACCAGGGCTATGGACCCTCAATC TTAATCAAGTGGTCCTCGCATCTGGTGTTCAACAAGAATGCCCTGCAGAT CGTAAATTATTAACCTTACAAGCTGCAACGAAAATTGGTTTAGAGTTTCC CCTAGGTAGACCTTGGACAACATTTTCAATATTTGGTGAAACCAATATCA TCCTGCCATTTATGTTTGAGGTTTACCGACTTTCTGTTTTCCTTATGCAT GATGACTTGAATGAATGGAATGCAAAACACGAAGAACAATCACATAAACA GTTGCAAATAGCTAAAGACCTTGTAATATATCAAGCAGCAAAGATGTTAC AGATTGAAAATAAAGGAAGGTTTCGCATTCTAGATTCATTGCCGTGTTCC AGAAGCCATCAAAAAGGTACACGAAGTGTTCTGAGCATTTCTGTAAAGAA GGACCATAAATGTCGTTTCGATAAAAGTCAATTCTTTAACCTTCTCGCGA ATCTTCAAACGATGACCCCGGGAGAGAAAAAAGATTTTTTAAGCCATGCT AAAGAAGAATGGAATCACGAGCAAGCCTCAAAACTGAATCTTGAAAACTA TGCCAAATTTATCGCGTATAAGTATGCAGCGATTCATTTTAGTGAGATCT TTAAATTCTGATTGCAGTCTCTGATCATCGTCGAAATTTTCCTATTCCCA AGTTAAGCAATATTTTTTTAACTCAAAAATATTCTGACGATAACATAATG TGTCATTTTTGCGCCAGTATGGTAAGTGGCCTAGCTACAACTTGCACTTT TTTTGCCTGCAGATATCGTTAAAAAAAAGATTCAAAGTATGAAAAATATT GGTGGTGAACCACAGTAACACGGGCCCCTAACACCATTGTGTCGCAGACC CCCTGGGCCCTAGCCCCACTGGAAAATTTCGTCCCCGGTAGAAAAATACG TTGGAATTCACTGGGAAATTGTATTTGAGTTCATCCCCATTCGAAATCTA ATGTTTAAAAATTACACTCCAAAACCAATCGCACTGGTTTTTTTAACCTT GGAACAATGGAATTTCTATCCCCATTGGGGTTTCAATTTTATCCACACTG AGGAAAAAAGTTCCACCGGGACTGTGAGACACGGTTGTGCATTACCAAGG GCATCAAAAGGCTCCATAAACCTCCTTCACAGTGCAAAGGTGGGTTTGAT GAAAGGTATTCAAATTGATGAAGGACCATTCGCAGGTTCGCATAATGGAA AGGCTTATACCGGTTTATACTGTATTAGGTTCGAACAATCTTTTACTCAA TCAAGGTGCTTTAGTCATTTTAAACTATTTCAGATTATTGAAAATAAGCA TTATTAATGACTTTCAGCCTCGTTTAGAGGGTCCCCAATTCCACAGTGCC GTCAAATATTTCTTGATTTCTCAAGAAATTGTCGAATTCTTTTATTCAAA TAGATTGGTTTTGAGTAGAAATTAGTTATTGATTTTCATTTTTGAAACCC CTTTTTTTAGACTTTTGGGGCTCATGACGTAAATTTATGTATTGTCTCTA TGTAAATAATAAAGAAACGGAGAATACTTTTTCGGATTATTTTTTTAATA AATTCACACATATTACACGTTTTTTATAAGAACATAAGGCTTCGCTGGCA TAAATGTTAAGAACAAGTTAAGAACATTTAAAGGCTTTGCGGACTCAAAA ATACGCTATTTTTTTAGGAAAATGGTCAAAAATATTTACAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035879XLOC_035879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056975-exon-scaffold_284-1575043694:1344372..1344450TCONS_00056975-exon-scaffold_284-1575043694:1344372..1344450Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1575043694:1343768..1343919TCONS_00056975-exon-scaffold_284-1575043694:1343768..1343919Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1575043694:1341205..1343357TCONS_00056975-exon-scaffold_284-1575043694:1341205..1343357Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1510915933:1344372..1344450TCONS_00056975-exon-scaffold_284-1510915933:1344372..1344450Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1510915933:1343768..1343919TCONS_00056975-exon-scaffold_284-1510915933:1343768..1343919Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1510915933:1341205..1343357TCONS_00056975-exon-scaffold_284-1510915933:1341205..1343357Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1491911889:1344372..1344450TCONS_00056975-exon-scaffold_284-1491911889:1344372..1344450Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1491911889:1343768..1343919TCONS_00056975-exon-scaffold_284-1491911889:1343768..1343919Clytia hemisphaericaexon
TCONS_00056975-exon-scaffold_284-1491911889:1341205..1343357TCONS_00056975-exon-scaffold_284-1491911889:1341205..1343357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1341205..1344450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.76543 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000764316 0.0041033 0.00377511 0.0048795 1.47107e-05 0.0418194 2.01325 2.26801e-09 2.76543 2.10981 2.16234 1.20195 1.58232 1.01184 1.82827 2.2352 0.183676 0 0.0183041 0 1.07243 0.769299 0.0125465 0.53486 0.089407 0.0121041 0.00366552 0.00602993 0.0186597 0.0171132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
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