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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056975 ID=TCONS_00056975|Name=TCONS_00056975|organism=Clytia hemisphaerica|type=transcript|length=2384bp
NTGTTTTGTAACTGCCACAAATATGTATTtatttttgtcaagatattTTC
GACGCTAATATTCTGTCTACAAGTGCAAGcaGGTAATGTTGACGCATTGG
AGAAAGTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGTAC
CTACCAAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTACGG
ATCATGGAAATATGTTGAATCTCATCAACAGATCTTCTTCAATCAGAATC
CTAAACCGTCTATCAATCTCATCGACCTGATTGTGTTTTTTGACCAATCA
TTTGACGAACAGATACCAGTTGATTGCCAAATTTTCCGTTACCATGGAAA
AGAGGCTACTCGTCACCAACTCTTACAAAACGACGCTACCTTGAATTCAT
TCGTcgataaaaacaacaacaaagatGCTTCCGAATTTCGTCTTCAACTT
GATCAGCTGAAGAATACAAATCATACGAAAACACGGATTTCCGAAGATGA
AATCATGTTTCGGTCAGCTTGTTGGAGAATACCTCAATCGAACAATACGT
TCAAAGATGGATTCTCTTCATTGGATAATCTCTTACCGTTTCTTAGAGAA
GGTATCGACGAAATGTTTGAGGAATATCAATATATTCTCAATGTAGACAC
TGATTCGATACTGACACCAGGGCTATGGACCCTCAATCTTAATCAAGTGG
TCCTCGCATCTGGTGTTCAACAAGAATGCCCTGCAGATCGTAAATTATTA
ACCTTACAAGCTGCAACGAAAATTGGTTTAGAGTTTCCCCTAGGTAGACC
TTGGAcaacattttcaatatttggtGAAACCAATATCATCCTGCCATTTA
TGTTTGAGGTTTACCGACTTTCTGTTTTCCTTATGCATGATGACTTGAAT
GAATGGAATGCAAAACACGAAGAACAATCACATAAACAGTTGCAAATAGC
TAAAGACCTTGTAATATATCAAGCAGCAAAGATGTTACAGATTGAAAATA
AAGGAAGGTTTCGCATTCTAGATTCATTGCCGTGTTCCAGAAGCCATCAA
AAAGGTACACGAAGTGTTCTGAGCATTTCTGTAAAGAAGGACCATAAATG
TCGTTTCGATAAAAGTCAATTCTTTAACCTTCTCGCGAATCTTCAAACGA
TGACCCCGGgagagaaaaaagattttttaagccATGCTAAAGAAGAATGG
AATCACGAGCAAGCCTCAAAACTGAATCTTGAAAACTATGCCAAATTTAT
CGCGTATAAGTATGCAGCGATTCATTTTAGTgagatctttaaattctgaT
TGCAGTCTCTGATCATCGTCGAAATTTTCCTATTCCCAAGTtaagcaata
tttttttaactcaaaaatATTCTGACGATAACATAATGTGTCATTTTTGC
GCCAGTATGGTAAGTGGCCTAGCTACAACTTGCACTTTTTTTGCCTGCAG
ATATcgttaaaaaaaagattcaaagtatgaaaaatattggtGGTGAACCA
CAGTAACACGGGCCCCTAACACCATTGTGTCGCAGACCCCCTGGGCccta
gccccactggaaaatttcgtccccggtagaaAAATACGTTGGAATTCACT
GGGAAATTGTATTTGagttcatccccattcgaaatctaatgtttaaaaat
tacactccaaaaccaATCGCACTggtttttttaaccttggaacaatggaa
tttctatccccattggggtTTCAATTTTATCcacactgaggaaaaaagtt
ccaccgggactgtgagacaCGGTTGTGCATTACCAAGGGCATCAAAAGGC
TCCATAAACCTCCTTCACAGTGCAAAGGTGGGTTTGATGAAAGGTATTCA
AATTGATGAAGGACCATTCGCAGGTTCGCATAATGGAAAGGCTTATACCG
GTTTATACTGTATTAGGTTCGAACAATCTTTTACTCAATCAAGGTGCTTT
AGTCATTTTAAACTATTTCAGATTATTGAAAATAAGCATTATTAATGACT
TTCAGCCTCGTTTAGAGGGTCCCCAATTCCACAGTGCcgtcaaatatttc
ttgatttCTCAAGAAATTGTCGAATTCTTTTATTCAAATAGATTGGTTTT
GAGTAGAAATTAGttattgattttcatttttgaaaccCCTTTTTTTAGAC
TTTTGGGGCTCATGACGTAAATTTATGTATTGTCTCTATGTAAATAATAA
AGAAACGGAGAATACTTTTTcggattatttttttaataaattcacacata
ttacacgttttttataagaacataaggcttcgctggcataaatgttaaga
acaagttaagaacatttaaaggctttgcggactcaaaAATACGctatttt
tttaggaaaatggtcaaaaatatttacaaaatag Run BLAST on NCBI transcript from alignment at scaffold_284:1341205..1344450- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056975 ID=TCONS_00056975|Name=TCONS_00056975|organism=Clytia hemisphaerica|type=transcript|length=3246bp|location=Sequence derived from alignment at scaffold_284:1341205..1344450- (Clytia hemisphaerica)
NTGTTTTGTAACTGCCACAAATATGTATTTATTTTTGTCAAGATATTTTC
GACGCTAATATTCTGTCTACAAGTGCAAGGTATACAGTTGTCAACGTTCT
ACCTTCTAGAGGCTGCAACTTTTAATGTGATAGTTTAGCCTTTTACTTAG
GCAAATTGGGTGCTGTGTATGTGCGAGTCATAAGGGTCCCTTTTTCAAAT
GCTCGAAAGTCCCTCAATGGGTTACAAAACCAAAAAAAAGACAATTGAGT
CTCTTTAAGGGTCTAAAATCGAAATTTCCTCTCCCAAAGGGTCATGATTT
TCCAAAATTTGGACAAAAAACGAGCGAAAATGGACAAAAATTGTCAAAAA
CGTCGAAATTCAGTCTTTCAAAGGGTTGATTTTCGATTTTTGGCTCGAAT
ATACCCGTCACCTCGCAAACTTAGTAGCCCCCGCCCGGGGCGGGCTTAAA
GTGAACGACATGACTTTAATACCTTCTTAAAATCCCTTTGTAAATATTTT
TCCAGATACTTGTCTTTTTTTTTTAATTTAGCAGGTAATGTTGACGCATT
GGAGAAAGTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGT
ACCTACCAAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTAC
GGATCATGGAAATATGTTGAATCTCATCAACAGGTTGAATTTGCGCGCTT
TTCTGGAATTCTTGATTAGGATATTACTAGTAGAGTGGAGTTTCCTTAAT
TGGAACCTCTATAATTCAAATGCCTCCTTAAAACAAGTTTTATATTTTCT
TCAGTTAACAATGTCTTTTAAACCTAACTCCATAACTCGCAATCTCCGTA
ACTCGATCATCGACTGCGTGTTTGAGCATCGATGGCTCGAGTTACGGAGA
CTCTGTAAAAGATTGCAAAAGTGTAACACTCTTTTTATCGCATACTTTAG
ACTATAACTAGAAAACTGTATAGGGGAATGAATATACCATCAGAGATAGC
AGGCTCTCAATTCAATTCTAAAACCAAACCAACTAAAAAAAGTGAGACAA
CTTTATGTTATACTTAAACCATTTTGATTCTCTCTCTTTGCAGATCTTCT
TCAATCAGAATCCTAAACCGTCTATCAATCTCATCGACCTGATTGTGTTT
TTTGACCAATCATTTGACGAACAGATACCAGTTGATTGCCAAATTTTCCG
TTACCATGGAAAAGAGGCTACTCGTCACCAACTCTTACAAAACGACGCTA
CCTTGAATTCATTCGTCGATAAAAACAACAACAAAGATGCTTCCGAATTT
CGTCTTCAACTTGATCAGCTGAAGAATACAAATCATACGAAAACACGGAT
TTCCGAAGATGAAATCATGTTTCGGTCAGCTTGTTGGAGAATACCTCAAT
CGAACAATACGTTCAAAGATGGATTCTCTTCATTGGATAATCTCTTACCG
TTTCTTAGAGAAGGTATCGACGAAATGTTTGAGGAATATCAATATATTCT
CAATGTAGACACTGATTCGATACTGACACCAGGGCTATGGACCCTCAATC
TTAATCAAGTGGTCCTCGCATCTGGTGTTCAACAAGAATGCCCTGCAGAT
CGTAAATTATTAACCTTACAAGCTGCAACGAAAATTGGTTTAGAGTTTCC
CCTAGGTAGACCTTGGACAACATTTTCAATATTTGGTGAAACCAATATCA
TCCTGCCATTTATGTTTGAGGTTTACCGACTTTCTGTTTTCCTTATGCAT
GATGACTTGAATGAATGGAATGCAAAACACGAAGAACAATCACATAAACA
GTTGCAAATAGCTAAAGACCTTGTAATATATCAAGCAGCAAAGATGTTAC
AGATTGAAAATAAAGGAAGGTTTCGCATTCTAGATTCATTGCCGTGTTCC
AGAAGCCATCAAAAAGGTACACGAAGTGTTCTGAGCATTTCTGTAAAGAA
GGACCATAAATGTCGTTTCGATAAAAGTCAATTCTTTAACCTTCTCGCGA
ATCTTCAAACGATGACCCCGGGAGAGAAAAAAGATTTTTTAAGCCATGCT
AAAGAAGAATGGAATCACGAGCAAGCCTCAAAACTGAATCTTGAAAACTA
TGCCAAATTTATCGCGTATAAGTATGCAGCGATTCATTTTAGTGAGATCT
TTAAATTCTGATTGCAGTCTCTGATCATCGTCGAAATTTTCCTATTCCCA
AGTTAAGCAATATTTTTTTAACTCAAAAATATTCTGACGATAACATAATG
TGTCATTTTTGCGCCAGTATGGTAAGTGGCCTAGCTACAACTTGCACTTT
TTTTGCCTGCAGATATCGTTAAAAAAAAGATTCAAAGTATGAAAAATATT
GGTGGTGAACCACAGTAACACGGGCCCCTAACACCATTGTGTCGCAGACC
CCCTGGGCCCTAGCCCCACTGGAAAATTTCGTCCCCGGTAGAAAAATACG
TTGGAATTCACTGGGAAATTGTATTTGAGTTCATCCCCATTCGAAATCTA
ATGTTTAAAAATTACACTCCAAAACCAATCGCACTGGTTTTTTTAACCTT
GGAACAATGGAATTTCTATCCCCATTGGGGTTTCAATTTTATCCACACTG
AGGAAAAAAGTTCCACCGGGACTGTGAGACACGGTTGTGCATTACCAAGG
GCATCAAAAGGCTCCATAAACCTCCTTCACAGTGCAAAGGTGGGTTTGAT
GAAAGGTATTCAAATTGATGAAGGACCATTCGCAGGTTCGCATAATGGAA
AGGCTTATACCGGTTTATACTGTATTAGGTTCGAACAATCTTTTACTCAA
TCAAGGTGCTTTAGTCATTTTAAACTATTTCAGATTATTGAAAATAAGCA
TTATTAATGACTTTCAGCCTCGTTTAGAGGGTCCCCAATTCCACAGTGCC
GTCAAATATTTCTTGATTTCTCAAGAAATTGTCGAATTCTTTTATTCAAA
TAGATTGGTTTTGAGTAGAAATTAGTTATTGATTTTCATTTTTGAAACCC
CTTTTTTTAGACTTTTGGGGCTCATGACGTAAATTTATGTATTGTCTCTA
TGTAAATAATAAAGAAACGGAGAATACTTTTTCGGATTATTTTTTTAATA
AATTCACACATATTACACGTTTTTTATAAGAACATAAGGCTTCGCTGGCA
TAAATGTTAAGAACAAGTTAAGAACATTTAAAGGCTTTGCGGACTCAAAA
ATACGCTATTTTTTTAGGAAAATGGTCAAAAATATTTACAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056975-exon-scaffold_284-1575043694:1344372..1344450 | TCONS_00056975-exon-scaffold_284-1575043694:1344372..1344450 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1575043694:1343768..1343919 | TCONS_00056975-exon-scaffold_284-1575043694:1343768..1343919 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1575043694:1341205..1343357 | TCONS_00056975-exon-scaffold_284-1575043694:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1510915933:1344372..1344450 | TCONS_00056975-exon-scaffold_284-1510915933:1344372..1344450 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1510915933:1343768..1343919 | TCONS_00056975-exon-scaffold_284-1510915933:1343768..1343919 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1510915933:1341205..1343357 | TCONS_00056975-exon-scaffold_284-1510915933:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1491911889:1344372..1344450 | TCONS_00056975-exon-scaffold_284-1491911889:1344372..1344450 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1491911889:1343768..1343919 | TCONS_00056975-exon-scaffold_284-1491911889:1343768..1343919 | Clytia hemisphaerica | exon |
| TCONS_00056975-exon-scaffold_284-1491911889:1341205..1343357 | TCONS_00056975-exon-scaffold_284-1491911889:1341205..1343357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1341205..1344450 - |
Blast
The following BLAST results are available for this feature:
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