TCONS_00057296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057296
Unique NameTCONS_00057296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=transcript|length=2235bp
TGTATCATTTCCTTGCTGACTCCATGATGAATTTATGGTGGAACTTGTGT
TGATGCTATGAGACGATGTCGTGTTCTCAGATGTATTGAAACTAATGTTC
AATGACGTAGAATTGATTGTTGGATTCAGATTGTCGGATGCATTGAAATT
CTTCAATGATGTAGAATTTATTGTTGAATTCAGATATTGATTTGTGGAAA
CTTTTGTAGTGCTCCTTGATGGTGTTTGAGTGTGGAGATCGTCGTAGAAC
ATAGATGACAATGATGGCGACGATTGAAAATAAGATGATTGGGATGATAG
GAAGCGTACAGATCTTTGAATGTAATCGTTAAGGTTCGTGGTTGAATCAA
TTGTTTGAGGTGTGATTAATGGGCTGGATGGTTGGATGGGTGAGCTATCA
TCAGATGAAATGGGCTCCTTTTTGTCAGAACCGGCTACGTCAGCATCtgc
atcttcttcttcttccttctcCTCATTGTCTTTTTCTTCCTCTTCTTTGG
TATCTTTACTTTTGAATAAGGATCTTTGGAGATAATCGATTGTTGATCGC
TCTGTTGTTCGAATAGTGCTCTCAAATGTAGATTCAAGATTTATAGCAGT
AGATTTATCGCTTGTAATTACTTCGGTGGTTGATGAAAAGGACATTTTAC
AGACCGGATCTTTATCATTAGAACATGTTTCCAGATTGCATTGAGTGTTA
TATTTTGCCAGAGATTTAGTTTTATGGATTGCTAAGGCAGTTGTGCAACA
ACATATTGCCATATCATACATGTCAGTTTGTATTGTTACGTCTGCCGGTA
GACCATCAAATACATCCGAGCGTAACACTTCAATTAGGTGCAGGGATACG
GTTAATGTCTCTAGACTACCAAGGCCGATCAGGGTCTGTTGGGACAGGCA
CCTAAATCTGTTGCCATTCAACTGCAGACTCTCGAGTTCTCCAAGCATTT
GAAAAGATCCATGCTCAATATTGATAAGTGTCCTTTTCGTATTAAGATTT
GAAAGTGAGAGATGATTTAAATTCTCAAGTCCTTGAAAGGTATGTGGACT
TATGTGATCGATGTGATTGTTCAACAGAAAGAGTGAAGTCAAATTCCCCA
ACTCCTCGAAGCATCCATCATCGAGTCTTTCAATGTTATTGTTATGCAAA
TATAGTTCCTTCAAATATGGCAAATCGTAGAAATCATATTTTCTGATTCG
AGTAATCAGATTATCATTCAGTATAAGTTTCTCAGTTTCATTTGGTATAT
TACCCGGTACTGcagataaaaaattttgatgacaaaGTACATCTTTAAAG
TCATTATAACATTTGCATTCTTCGGGACAGATACTGCTTTTTCTTGGAGT
TGCTGGTCGAACAGGCTCTGGTTCTGAAGGAGTTGTTGTAATTGGTGTTG
TTTGAACTACAGCATCTGTGGGTTTGGAAATGTCGGATTCTGGATTGTCC
GGGATAGACGTTGTTGGTGGTGTAAGTTTCCTAAGACACGTGGTGTCATA
TGGACGGTTACAGATACCTTCAGCATTATAACAGTCCTTGATGGTACATT
TAACCGAAGGCTTAATCATCAATGACTCAATTGCAGCTGCAGTCGAACAG
CAACATAAATAGCTACGACCTAAATGTACATCAACATCCTTTGAAAAATG
TGAGAACGCTAGGCTgttgattttattgatttgattcaatGAGATTGTTA
GATACTTCAGTTTTGATAACCCGGAGAAAAGATTATTGGATATGAAATGG
AAGTAATTTTTGGTTAAGAAAAGATCTTCCAAAGATGGTGTTTGAGTAAA
AACAAAATCGTCAATACATGGCACAATGTGTGAATGAATTTCAGATAACC
AGAGACTTTTTAATCTCCATAATCCAACGAAGGTGTATTGAGTGATATAT
GATAGATAATTCTTACTCAGATTCAGTTCTATCAAATTATGCAGGTCTGT
GAATGCATACTCATCTATATGAGCTATATGGTTTTTGTGTAGGTACAATT
TACGTAGATTGTTGAGTCCAGCCAAGTCAGCTCTGGAGATTTGCTGTATA
TTGTTATTGTTTAGATATAACTCTTCGGTGTCCCTTGGGATGTCTTTTGG
AATGGAATTGAGTGGCTTTTCTTTCCCAATACAAGTGACTGTCTTTGTGG
TTTGATCACAAGTACATTCTATAGGACATGAAAAGGATGTGATCACATGA
TGTCCAAAGATGATGGTGAAGATGATCAATGTCTT
Run BLAST on NCBI

protein sequence of TCONS_00057296-protein

>TCONS_00057296-protein ID=TCONS_00057296-protein|Name=TCONS_00057296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
KTLIIFTIIFGHHVITSFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIP
RDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHN
LIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTP
SLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKD
VDVHLGRSYLCCCSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTC
LRKLTPPTTSIPDNPESDISKPTDAVVQTTPITTTPSEPEPVRPATPRKS
SICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKY
DFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTF
QGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQ
TLIGLGSLETLTVSLHLIEVLRSDVFDGLPADVTIQTDMYDMAICCCTTA
LAIHKTKSLAKYNTQCNLETCSNDKDPVCKMSFSSTTEVITSDKSTAINL
ESTFESTIRTTERSTIDYLQRSLFKSKDTKEEEEKDNEEKEEEEDADADV
AGSDKKEPISSDDSSPIQPSSPLITPQTIDSTTNLNDYIQRSVRFLSSQS
SYFQSSPSLSSMFYDDLHTQTPSRSTTKVSTNQYLNSTINSTSLKNFNAS
DNLNPTINSTSLNISFNTSENTTSSHSINTSSTINSSWSQQGNDT
Run BLAST on NCBI

transcript from alignment at scaffold_286:477846..480080

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=transcript|length=2235bp|location=Sequence derived from alignment at scaffold_286:477846..480080 (Clytia hemisphaerica)
AAGACATTGATCATCTTCACCATCATCTTTGGACATCATGTGATCACATC CTTTTCATGTCCTATAGAATGTACTTGTGATCAAACCACAAAGACAGTCA CTTGTATTGGGAAAGAAAAGCCACTCAATTCCATTCCAAAAGACATCCCA AGGGACACCGAAGAGTTATATCTAAACAATAACAATATACAGCAAATCTC CAGAGCTGACTTGGCTGGACTCAACAATCTACGTAAATTGTACCTACACA AAAACCATATAGCTCATATAGATGAGTATGCATTCACAGACCTGCATAAT TTGATAGAACTGAATCTGAGTAAGAATTATCTATCATATATCACTCAATA CACCTTCGTTGGATTATGGAGATTAAAAAGTCTCTGGTTATCTGAAATTC ATTCACACATTGTGCCATGTATTGACGATTTTGTTTTTACTCAAACACCA TCTTTGGAAGATCTTTTCTTAACCAAAAATTACTTCCATTTCATATCCAA TAATCTTTTCTCCGGGTTATCAAAACTGAAGTATCTAACAATCTCattga atcaaatcaataaaatcaacAGCCTAGCGTTCTCACATTTTTCAAAGGAT GTTGATGTACATTTAGGTCGTAGCTATTTATGTTGCTGTTCGACTGCAGC TGCAATTGAGTCATTGATGATTAAGCCTTCGGTTAAATGTACCATCAAGG ACTGTTATAATGCTGAAGGTATCTGTAACCGTCCATATGACACCACGTGT CTTAGGAAACTTACACCACCAACAACGTCTATCCCGGACAATCCAGAATC CGACATTTCCAAACCCACAGATGCTGTAGTTCAAACAACACCAATTACAA CAACTCCTTCAGAACCAGAGCCTGTTCGACCAGCAACTCCAAGAAAAAGC AGTATCTGTCCCGAAGAATGCAAATGTTATAATGACTTTAAAGATGTACt ttgtcatcaaaattttttatctgCAGTACCGGGTAATATACCAAATGAAA CTGAGAAACTTATACTGAATGATAATCTGATTACTCGAATCAGAAAATAT GATTTCTACGATTTGCCATATTTGAAGGAACTATATTTGCATAACAATAA CATTGAAAGACTCGATGATGGATGCTTCGAGGAGTTGGGGAATTTGACTT CACTCTTTCTGTTGAACAATCACATCGATCACATAAGTCCACATACCTTT CAAGGACTTGAGAATTTAAATCATCTCTCACTTTCAAATCTTAATACGAA AAGGACACTTATCAATATTGAGCATGGATCTTTTCAAATGCTTGGAGAAC TCGAGAGTCTGCAGTTGAATGGCAACAGATTTAGGTGCCTGTCCCAACAG ACCCTGATCGGCCTTGGTAGTCTAGAGACATTAACCGTATCCCTGCACCT AATTGAAGTGTTACGCTCGGATGTATTTGATGGTCTACCGGCAGACGTAA CAATACAAACTGACATGTATGATATGGCAATATGTTGTTGCACAACTGCC TTAGCAATCCATAAAACTAAATCTCTGGCAAAATATAACACTCAATGCAA TCTGGAAACATGTTCTAATGATAAAGATCCGGTCTGTAAAATGTCCTTTT CATCAACCACCGAAGTAATTACAAGCGATAAATCTACTGCTATAAATCTT GAATCTACATTTGAGAGCACTATTCGAACAACAGAGCGATCAACAATCGA TTATCTCCAAAGATCCTTATTCAAAAGTAAAGATACCAAAGAAGAGGAAG AAAAAGACAATGAGgagaaggaagaagaagaagatgcaGATGCTGACGTA GCCGGTTCTGACAAAAAGGAGCCCATTTCATCTGATGATAGCTCACCCAT CCAACCATCCAGCCCATTAATCACACCTCAAACAATTGATTCAACCACGA ACCTTAACGATTACATTCAAAGATCTGTACGCTTCCTATCATCCCAATCA TCTTATTTTCAATCGTCGCCATCATTGTCATCTATGTTCTACGACGATCT CCACACTCAAACACCATCAAGGAGCACTACAAAAGTTTCCACAAATCAAT ATCTGAATTCAACAATAAATTCTACATCATTGAAGAATTTCAATGCATCC GACAATCTGAATCCAACAATCAATTCTACGTCATTGAACATTAGTTTCAA TACATCTGAGAACACGACATCGTCTCATAGCATCAACACAAGTTCCACCA TAAATTCATCATGGAGTCAGCAAGGAAATGATACA

Coding sequence (CDS) from alignment at scaffold_286:477846..480080

>TCONS_00057296 ID=TCONS_00057296|Name=TCONS_00057296|organism=Clytia hemisphaerica|type=CDS|length=2235bp|location=Sequence derived from alignment at scaffold_286:477846..480080 (Clytia hemisphaerica)
AAGACATTGATCATCTTCACCATCATCTTTGGACATCATGTGATCACATC
CTTTTCATGTCCTATAGAATGTACTTGTGATCAAACCACAAAGACAGTCA
CTTGTATTGGGAAAGAAAAGCCACTCAATTCCATTCCAAAAGACATCCCA
AGGGACACCGAAGAGTTATATCTAAACAATAACAATATACAGCAAATCTC
CAGAGCTGACTTGGCTGGACTCAACAATCTACGTAAATTGTACCTACACA
AAAACCATATAGCTCATATAGATGAGTATGCATTCACAGACCTGCATAAT
TTGATAGAACTGAATCTGAGTAAGAATTATCTATCATATATCACTCAATA
CACCTTCGTTGGATTATGGAGATTAAAAAGTCTCTGGTTATCTGAAATTC
ATTCACACATTGTGCCATGTATTGACGATTTTGTTTTTACTCAAACACCA
TCTTTGGAAGATCTTTTCTTAACCAAAAATTACTTCCATTTCATATCCAA
TAATCTTTTCTCCGGGTTATCAAAACTGAAGTATCTAACAATCTCattga
atcaaatcaataaaatcaacAGCCTAGCGTTCTCACATTTTTCAAAGGAT
GTTGATGTACATTTAGGTCGTAGCTATTTATGTTGCTGTTCGACTGCAGC
TGCAATTGAGTCATTGATGATTAAGCCTTCGGTTAAATGTACCATCAAGG
ACTGTTATAATGCTGAAGGTATCTGTAACCGTCCATATGACACCACGTGT
CTTAGGAAACTTACACCACCAACAACGTCTATCCCGGACAATCCAGAATC
CGACATTTCCAAACCCACAGATGCTGTAGTTCAAACAACACCAATTACAA
CAACTCCTTCAGAACCAGAGCCTGTTCGACCAGCAACTCCAAGAAAAAGC
AGTATCTGTCCCGAAGAATGCAAATGTTATAATGACTTTAAAGATGTACt
ttgtcatcaaaattttttatctgCAGTACCGGGTAATATACCAAATGAAA
CTGAGAAACTTATACTGAATGATAATCTGATTACTCGAATCAGAAAATAT
GATTTCTACGATTTGCCATATTTGAAGGAACTATATTTGCATAACAATAA
CATTGAAAGACTCGATGATGGATGCTTCGAGGAGTTGGGGAATTTGACTT
CACTCTTTCTGTTGAACAATCACATCGATCACATAAGTCCACATACCTTT
CAAGGACTTGAGAATTTAAATCATCTCTCACTTTCAAATCTTAATACGAA
AAGGACACTTATCAATATTGAGCATGGATCTTTTCAAATGCTTGGAGAAC
TCGAGAGTCTGCAGTTGAATGGCAACAGATTTAGGTGCCTGTCCCAACAG
ACCCTGATCGGCCTTGGTAGTCTAGAGACATTAACCGTATCCCTGCACCT
AATTGAAGTGTTACGCTCGGATGTATTTGATGGTCTACCGGCAGACGTAA
CAATACAAACTGACATGTATGATATGGCAATATGTTGTTGCACAACTGCC
TTAGCAATCCATAAAACTAAATCTCTGGCAAAATATAACACTCAATGCAA
TCTGGAAACATGTTCTAATGATAAAGATCCGGTCTGTAAAATGTCCTTTT
CATCAACCACCGAAGTAATTACAAGCGATAAATCTACTGCTATAAATCTT
GAATCTACATTTGAGAGCACTATTCGAACAACAGAGCGATCAACAATCGA
TTATCTCCAAAGATCCTTATTCAAAAGTAAAGATACCAAAGAAGAGGAAG
AAAAAGACAATGAGgagaaggaagaagaagaagatgcaGATGCTGACGTA
GCCGGTTCTGACAAAAAGGAGCCCATTTCATCTGATGATAGCTCACCCAT
CCAACCATCCAGCCCATTAATCACACCTCAAACAATTGATTCAACCACGA
ACCTTAACGATTACATTCAAAGATCTGTACGCTTCCTATCATCCCAATCA
TCTTATTTTCAATCGTCGCCATCATTGTCATCTATGTTCTACGACGATCT
CCACACTCAAACACCATCAAGGAGCACTACAAAAGTTTCCACAAATCAAT
ATCTGAATTCAACAATAAATTCTACATCATTGAAGAATTTCAATGCATCC
GACAATCTGAATCCAACAATCAATTCTACGTCATTGAACATTAGTTTCAA
TACATCTGAGAACACGACATCGTCTCATAGCATCAACACAAGTTCCACCA
TAAATTCATCATGGAGTCAGCAAGGAAATGATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036101XLOC_036101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057296-exon-scaffold_286-1491911889:477846..480080TCONS_00057296-exon-scaffold_286-1491911889:477846..480080Clytia hemisphaericaexon
TCONS_00057296-exon-scaffold_286-1510915933:477846..480080TCONS_00057296-exon-scaffold_286-1510915933:477846..480080Clytia hemisphaericaexon
TCONS_00057296-exon-scaffold_286-1575043694:477846..480080TCONS_00057296-exon-scaffold_286-1575043694:477846..480080Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057296-proteinTCONS_00057296-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:477846..480080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (7.63579 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0198271 0.0193977 0.661216 0.410537 0.270161 0.400459 0.398422 0.731126 0.248377 0.501482 1.6654 2.10447 0 0.0106708 0 0.0269477 5.28661 7.63579 0.0846542 0.0743245 0 0.0912692 0.0564031 0.201354 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000372LRRNT
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Expect = 2.49e-16 / Id = 29.49Expect = 5.91e-34 / Id = 29.49SequenceSLIT1
Match NameE-valueIdentityDescription
SLIT15.907e-3429.49Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE... [more]
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