TCONS_00058012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058012
Unique NameTCONS_00058012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058012 ID=TCONS_00058012|Name=TCONS_00058012|organism=Clytia hemisphaerica|type=transcript|length=827bp
CCAAATATCACATAGAAACCGTGTATCAAATAATTTGGAAAGTTAcatac
tttctttttcaaatgagCGTTTCCATGAAAATCTGAGCCACGCTCCTTCA
TCAGACTACAAAAACCAGAAAACTAAGAAACAAAGTAAAGACAAAGATGG
AATTTGAAGAAGTCTCTAAGAAGAGCACGAAAAAGTACAAAAATCAGATG
TCAAAAGACCAGCCAATCCACCTGTCAACAAGGAACTTCAAAACGCCATC
CATCTCTCCTGAAGTTGATCTCACATGGTTTCTTCTACTTGGTGTGGCAT
CTGCTGTGCGTTTATACAAGTTATCAAAGCCAAATGCTGTTGTATTTGAC
GAGCTACATTATGGAAAGTTCACATCATATTTTGTGCAAGAGCGGTTTTT
CTTTGATGTGCATCCTCCACTTGGAAAATTGCTCTTTGCAGCTGCAGGAT
ACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGATTGGTGAAGAG
GTGCCAGACTCTCAAGTGCAAAGTGTTATGTATTTGCGAATGGTGACAAG
CTTCTTCAGTATTTTTCTGGTGCCATTGATTTACGAGATTGTATTGGAAC
TTTCGAGTAGTTACTGGTTTGCTGTAGTTGGTGCCCTACTTGTTTGTTTT
GGTAggaaaaatttgataatttgCCTTGGTGATAcatttttcctttaaaa
ctgTTAGGCGAGAgtaatttgattagttgttttacgggcctgaCCGACCT
GGACCAAccttgaaattccaaaaattgaagtaaaaataaaattgatttta
gttgtccttttttattttcattgctct
Run BLAST on NCBI

protein sequence of TCONS_00058012-protein

>TCONS_00058012-protein ID=TCONS_00058012-protein|Name=TCONS_00058012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MEFEEVSKKSTKKYKNQMSKDQPIHLSTRNFKTPSISPEVDLTWFLLLGV
ASAVRLYKLSKPNAVVFDELHYGKFTSYFVQERFFFDVHPPLGKLLFAAA
GYLTGFDGSFNFPKIGEEVPDSQVQSVMYLRMVTSFFSIFLVPLIYEIVL
ELSSSYWFAVVGALLVCFGRKNLIICLGDTFFL
Run BLAST on NCBI

transcript from alignment at scaffold_303:23114..33775-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058012 ID=TCONS_00058012|Name=TCONS_00058012|organism=Clytia hemisphaerica|type=transcript|length=10662bp|location=Sequence derived from alignment at scaffold_303:23114..33775- (Clytia hemisphaerica)
CCAAATATCACATAGAAACCGTGTATCAAATAATTTGGAAAGTTACATAC
TTTCTTTTTCAAATGAGCGTTTCCATGAAAATCTGAGCCACGCTCCTTCA
TCAGACTACAAAAACCAGAAAACTAAGAAACAAAGTAAAGACAAAGATGG
AATTTGAAGAAGTCTCTAAGAAGAGCACGAAAAAGGTTGGTAAGAATGAG
CATTTAAAAACCATGACAGGAAAAATTTATTTGATTTAGGCTACAGCTAC
CATGCCATGCTACCATCCAAATTTCCCTGCTGACTGAATGGTTGGCAGAC
GATATCATCCACCAGGATGCAAGTGAAATTTTTCAATCCGCGGACCTAGA
CGGGGGTTCGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCNNNNNNNN
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NNNNNNNNNNTTCAATTTCATGTTATTCAATCCAGTCCACTCATAGACTG
CGTTCATGTCATCTTGGAGCTGAATGTATAGCCCTCAAATGAAAGACAAA
GACCTGGCTGGTCATTAAAATACAAAGTTAAATCAGCCAACAATTTCTTT
CGTTCAAAATATATTTTCCAATATTCAGATTTTGGAAAAACAGAACATCA
AAATTTCCTGATTTTGGAAAATTGGAATGAAAAATTCCCCAATTTTCCAA
TTTTGAACAATGTGAGAACCGGGTAACTTGCATCAGAGGCTAACATGTAT
AGCCCTCAAATGAAAGACCTGGCTGGTCATTAAAATACAAAGTTAAATCA
AAACAAAAATGGTCGATTAAAGCTGCGAGCAGAGCTGCGTAGATGTATTT
TAATAGACCTTTTTTCAAAGAGGACGTCATNACGAGCGGAGCTGCGTAGA
TGTATTTTAATAGACCTTTTTTCAAAGAGGACGTCATGTTGAATAATTAT
GTAGTCCAGCCATAAAAACAATGATAGAGCCATGCATGATTACTATATCG
TGCATATTGTAATAATTATGCATGGTTTTATCATTGTTTTTCTGCTGGAC
TACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGTTCTATGACCAG
CCAGGTCATTCATTTGAGGGCTACCGTGAGTGGTCCTAAATCAGATAGCC
CTACCTAAATCCAATGGGGTCTTTCGAAGATACAAACTAAAATAAAAAAC
AAATCTTTCGCTGTGACGCAATGAAGATACCAAAGTGTAAACTAAACTGA
GAGATTTGATACACTGAACCAATTGAACCAATACATTAAAAATTACTTCT
TATAATATAATTTTTTATTACAAAATTGTTAACGTTTTAAACGCAAGCAA
CAGATTCAGAATAGTAGAGGCAATTATTTTTACAACTCACACTATTTTTA
TCACCTTAATTGACATCATGACATTTTAGTCATCTTATTAGACGTTTTGT
TTCGAGAGTTCTTGCAATATAGTTTATTACTCAACTTGGAGAGGGAATNT
GTTTTGTTTCGAGAGTTCTTTCAATATAGTTTATTACTCAACTTGGAGAG
GGAATGTTTGTAAACACAGAAATTTTTTCATAGCAGGTCGGATTTAGGCA
GGGGTGTCGGATTTAGGACCACTCACGGTATGCATGTTAGCAGAGGACCC
TGTCGACGCAACTGACTTAAGGAACACCGGACACGCGAAAGTCGGTGTGA
AATGACAATTTTTTTACCACCGGACATTCTCTACACCGACTTAAGGAAGT
CGGATGTCCGGTGTCGGAGAAGGATATTTTTTTCCGCCAGACAATCAAAA
CACCGGACATGACCAGTCCAGTGCGTCCTGTGTTTCTTAATTTTTTGTTT
CATAAATGTCCAGCGTCCAAAATTCCCTGTATGCAACACCGGACTGACGC
CGGTGTAGCAAAAGGATACTTTTTGCCACCAGGCAAATACACCGGACAGT
CCGGTGCGTTGGCAGGGTCTTGTTAGCGGCCTCCACTGATGCAAGTTACC
CAACCTCACGGTATTGGGGAAAGTTTTTCAACTTTGCTTGGTTTGGAGCT
CTCTCGCTTTTTAATGAGGTGAAGTTAACAGCTACCATCAACTGCTTTAA
CTTGGGACTATCTGTCAAAACATGGGAAGGCAATTCGGCCACCATTTAAC
CTCCAAAGTTAGGCCGACTCTAAAAAAAAAAGTTTCCGGTCCACCGGCCG
GGTGAAATTTTTTTTCGTTGTCACCCGACCGCATTTTTTTTCATAAGAAC
CAAATAGATAACAGAGGAAACTTTCTTCTTAAAAACCTTTACTCATTTAA
ACTCCCAGCTGGCACACAACGTTGTTTCGACGTTTATATAACGTTAAAAA
GACGTTATGAAAATTAGATGGACGTTGAAACAATGTTGTGTGCCAGCTGG
GCTGTTTCATCGTTCTCGTTGCTATAAAACACTTAAAAAAGTTTGTTTGT
TTAGCATGACAGCATGCTTTCTGGACATTATGGATCAAATAAATAGTGTT
ATGCATTTTAAAATGAGCAAAGAAAATCTTTCTTTGTCTAGGATAGGAGG
ATTTCTGAACGTTAAAGATCAAATAGATAGTGTTATGCATATTAAATGAG
TGAAGAAAATCTTTGTTTGTCTAGGAGGCTTNNNNNNNNNNNNNNNNNNN
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NNNNNTTTAAAACCCTTTCGACCCATCAGTTTCAAAATTTATGTGTTTAA
TTACTGAAAAATGCTCTTGATCGTGTAAAGGCTATTGCGATTGCCAAATT
TAAAATAGAAATTTGATAGGTCGATTTGTAACGTTTTCGGGCACTTTCTG
AAAGTAACTTTTTTATTCAATTGAGCATAACTTTTGATCTAAAGAACTGA
ATCAGATAAATGACCCATCAAAATTTAAGTTTATATTTCTTCTTTCCAAT
GGAATAGGCAAAATTTTATATTTCAAGCAAATCAGTTTCAAAGAGAGAAA
CTTTTTTGTGGCGCATCCGGTAGCTAAGCGCACCTCTCTTATTCATTATC
TAAGAATTGAAGCGACAAAAGTTATTTGAAGATATATTCAGTTATAATCC
AAGGTAGAACAATCTAAACATAGAAAGGGGGTATTTTTTAGTGCTCTTTA
CGATGATCGGTAGTTTTTTTGGATTCTATGTTTAGATTTTTCTACCCAGC
CCCGTTGCTATGTACGCGCGCCCTGTTGCTAAGACCTATGCTTGAAATCG
AAAGCGAAACCAAGATAATTTAGCGCACACTGCCGTTTTGCGTAATATCG
ATAAAGTGAAAGGAGGTCCTGACTGAAGTTTGAGCAGTTGACGCTATGTA
TGTATCCTTCATAGGGACTATCTTGGGACTATCTGCCCTGGTTCTGCAAA
GTACCGTAAGTTGGGGTCTGATATCAACATCCCTCGTCTAAATTCAGACA
CCTTTCTTTAGAGAAAGGAATATATAATATGAAAGGTTGAATCAATGATT
GAAACAGGATTATTCCTCTCACTGACCACTAAGCAAGAGGATGTCGGAAT
TAGAGGAGGGGTGTTGAAATTAGACCAAGTTAGGGTAGGTAGAGTGATTT
TTTAAACAGCTTTACTCAGAAGGTTTTATCTTTAAAACATTTAAAAGACT
AGATAGTTGCTATGACAAACAGTTTTAGTCACATTAGGAAATCAAGGTTT
CAGAAATAACAACATCAGTCATCTACAGAATGTATTTGAAACAAGGGTGA
GAATTACCTGAATCAAGTTGAAGATCCCAAGACAATTAATAAAAATCGAA
AGCTTGAAACAAAACATAATGTCCAATTAGACCACTCACAAATAAGTTGT
GTTCGCATCCTCCAACCGACTCACTTTCCTCATCTTAAAAATCCTACCCT
TTTCTAGTTGGAAAGTCGGAAAATTTGTGAGATCTTTTAGCAATATTATT
CAAAGAATTTAGTAGATTCAGTGTAACCAGTGTTTTGATTATCGATTATA
TATTGTTTTTAAGATTTCTATCCGCAATTTTCAAAGATTTTTGCGCTACG
CAACTCGTTTTTGCGCAGTTGCGATATGCAAAATAATCACATTGCAGCTC
ACGCGCTCTATAATTCTTGTCGCCTGAACAAACCTTTTCCAATGATTTTA
GCACCACCTGACACTACTAGATCTAAAAACATCAATTGTGGACACTGTTG
ATGTTTTTTATCCACAGTAGATCATTTTTATGGACAGTTTTTCCTTTTTC
TTGACAGTTGATGTCTGGAAATAGACAGCCAATACTTTTAATGAACTGTC
AAGATTATTTAATTGACTGTCAATATCTGATATTGACTGTTGATGTCTGA
TATATTGACTGTCGATATCTGATATTGACTGTCGATAGCTTTTATCTTGA
CTGTTGATGTCTGCGATCTTTTATATCAATCGACAGTCAATTAAATAATC
TTGGCAGTTCATTAAAAGTATTGGCTGTCTATTTCAAGACATCAACAGTC
AAGAAAAAGAAAAAACTGTCCATAAAAATGATAGACTGTGGATAAAAAAC
ATCAACCGTGTTCACAATTGATGTTTTCAGACCTAGCAGTGTGACTGCCT
ATATTCAGAGCGCATTTTTCCGATGATTTAAGAAACCAACCAACCGACTC
ATATTTTGGGGCTGTCAGTCAGGGAAATCCCTCAATTGCAGTAGTAATTT
TTTACTGCAATTGCGGTATAAACATCACTTTTACATTTTTCATATATACC
ACAATTGCAGTATATTCAAGAAACAGAATTCAAGATTGAAGTTTTCTAAA
AAATTCCTTTATCTGACAGATCAAATCGGGTCGGGAGAATAAAAATTGAT
TTCATTGATTTCAATTTATTATCATTTAATTTTTGCAATTTATTTTTGTC
AGCAAATCTGTAAACCAGAAAATAAAAAAGTAATTTCCCAATGAAACACT
TAAAATTTAGGAAGCAAGTCCTTTAAGAGATCGCACTAACATTTTTGTTT
GGCGTTAACTCCAGCTCTTTTTGCCGTCAATTTTTATTGTCACAAATGAA
TTCCTTTGAAGTAAACAAAAGAAAAAAACAACTGGAGTAAAGGTCTATTG
GAATGGTGGTGCAATCTCATAAAGGACTACTTGAGTTCGATTAGTTTGTT
CAGTACAAACTGTGATAAGTTAATTTCCAATCACCTCTTCCTTCACTTGC
AAAAATTTAAAACCACAGACATTGTCCATGAAAAGTTACCATTTTGACAT
TATCCAAACTTAAGGTTTCCTGGAATATTTATTTATCCACGGTCATATTA
CAAATCTAGATTTCAGAAGTTTCTTATTTATCCCCTATCCCTATTAATTT
CAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACCTGTCAACAAG
GAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTCACATGGTTTC
TTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTTATCAAAGCCA
AATGCTGTTGTGTAAGATGATATTATTACTGTCATCATTATTTTGTAATT
TGTCAGAAATGAAGATTCAAATAATCATATTCCCCCAAAGGACTAAACAA
ACTTGTGTTATGACTTTGAGAATCTAAAAAGGAGAGTGATCATACAGTAA
TTCTTATCTTATAGATTTGACGAGCTACATTATGGAAAGTTCACATCATA
TTTTGTGCAAGAGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAAT
TGCTCTTTGCAGCTGCAGGTATGACACCTTTTAAAAGTGCCAACTAGCTA
GCTTGTTTTTTGATTGCCTGTCATAGATAGAGTCAATATTTTACATGGAT
AGCTCAGTAATCTAGGACTTTTAGACAGTCTTTCGATTGTTTTCATGGGG
TCCAAGGCCAGCTGGCTCGGCTATCTATGAACTGAACGGAATATTGAAAG
GAGCAGGGATTCGAACTTCGAATTCCTTGACCGCTTGGCCATCGCTCCTC
AAATGTTCATGAGTTCATCAGTCAATGAACAAAAATACCTAAGCATTGAT
GATTCCAAAGAGTCGTTATTGGTGTATATTGCTTTTTTCAAGCTTTTTAA
ACCTATCTAAACAATTGTAGAGAAATGGGCTACATTAGTTACCTGACCAA
AACTTCCTTATTGAATCCTTTCATTGATCAGATTTATTACTTTTAAGATA
GGATTCTGATTTTCTTTGCCAGGCTTCAGGGGAAGTGTTAAGTAACAGCC
TTAACGTCTTTTTGCTCTAATATTCCACCATTTGCCATCAGAATTATAAG
TTTACTTTGTAATATTTAATTTTTGCTTTTAGGATACTTAACTGGTTTTG
ACGGATCTTTTAACTTTCCAAAGATTGGTGAAGGTAAAAGACTTTCTGTA
CCATTAATTATTTAAGTTTTTTGCAGAAAATGAATGAAAAGGGCAAAACT
GTGAAAGTTAGATTCTGAAATGCAATTTTGTATATTGTAAATCATATTTT
TTTGGTCTTATCCTGACAGCCTTCTTGAAGATTTCCAGAGTACTTTTATT
TTTATATTCTAGAGGTGCCAGACTCTCAAGTGCAAAGTGTTATGTATTTG
CGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGATTTACGA
GGTTTGTTAACTAAAACTATTGTTATATTTTGAAACCACTTAAGTGTCAT
TGATATTTTGATAGAAGTGAACTATTTTGAATCATTTGATAGACCCTCGG
ATACATTTTTTTGTAATGATACAGCTTTGATAAAGTTTCAATGCCCTTAA
GAACAAACCAAGTGCAAAACAGAGAAAATTAAATAATAATAGCTGCATTC
TTTTTCAGTGTTCAATATAAACTAATGTAAATACTTCTCTTGCACTAATG
ATTTACATTTCTTATGTTTCAGATTGTATTGGAACTTTCGAGTAGTTACT
GGTTTGCTGTAGTTGGTGCCCTACTTGTTTGTTTTGGTAGGAAAAATTTG
ATAATTTGCCTTGGTGATACATTTTTCCTTTAAAACTGTTAGGCGAGAGT
AATTTGATTAGTTGTTTTACGGGCCTGACCGACCTGGACCAACCTTGAAA
TTCCAAAAATTGAAGTAAAAATAAAATTGATTTTAGTTGTCCTTTTTTAT
TTTCATTGCTCT

Coding sequence (CDS) from alignment at scaffold_303:23114..33775-

>TCONS_00058012 ID=TCONS_00058012|Name=TCONS_00058012|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_303:23114..33775- (Clytia hemisphaerica)
ATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAGTTGGTGCCCT
ACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTTGGTGATACAT
TTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTTATGTATTTGC
GAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGATTTACGAG
GATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGATTGGTGAA
GATTTGACGAGCTACATTATGGAAAGTTCACATCATATTTTGTGCAAGAG
CGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGCTCTTTGCAGC
TGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACCTGTCAACA
AGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTCACATGGTT
TCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTTATCAAAGC
CAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAGAGCACGAAAA
AGATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAGTTGGTGCC
CTACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTTGGTGATAC
ATTTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTTATGTATTT
GCGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGATTTACG
AGGATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGATTGGTG
AAGATTTGACGAGCTACATTATGGAAAGTTCACATCATATTTTGTGCAAG
AGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGCTCTTTGCA
GCTGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACCTGTCAA
CAAGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTCACATGG
TTTCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTTATCAAA
GCCAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAGAGCACGAA
AAAGATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAGTTGGTG
CCCTACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTTGGTGAT
ACATTTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTTATGTAT
TTGCGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGATTTA
CGAGGATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGATTGG
TGAAGATTTGACGAGCTACATTATGGAAAGTTCACATCATATTTTGTGCA
AGAGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGCTCTTTG
CAGCTGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACCTGTC
AACAAGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTCACAT
GGTTTCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTTATCA
AAGCCAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAGAGCACG
AAAAAGATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAGTTGG
TGCCCTACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTTGGTG
ATACATTTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTTATGT
ATTTGCGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGATT
TACGAGGATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGATT
GGTGAAGATTTGACGAGCTACATTATGGAAAGTTCACATCATATTTTGTG
CAAGAGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGCTCTT
TGCAGCTGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACCTG
TCAACAAGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTCAC
ATGGTTTCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTTAT
CAAAGCCAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAGAGCA
CGAAAAAGATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAGTT
GGTGCCCTACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTTGG
TGATACATTTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTTAT
GTATTTGCGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATTGA
TTTACGAGGATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAAGA
TTGGTGAAGATTTGACGAGCTACATTATGGAAAGTTCACATCATATTTTG
TGCAAGAGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGCTC
TTTGCAGCTGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCACC
TGTCAACAAGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATCTC
ACATGGTTTCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAGTT
ATCAAAGCCAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAGAG
CACGAAAAAGATTGTATTGGAACTTTCGAGTAGTTACTGGTTTGCTGTAG
TTGGTGCCCTACTTGTTTGTTTTGGTAGGAAAAATTTGATAATTTGCCTT
GGTGATACATTTTTCCTTTAAAGGTGCCAGACTCTCAAGTGCAAAGTGTT
ATGTATTTGCGAATGGTGACAAGCTTCTTCAGTATTTTTCTGGTGCCATT
GATTTACGAGGATACTTAACTGGTTTTGACGGATCTTTTAACTTTCCAAA
GATTGGTGAAGATTTGACGAGCTACATTATGGAAAGTTCACATCATATTT
TGTGCAAGAGCGGTTTTTCTTTGATGTGCATCCTCCACTTGGAAAATTGC
TCTTTGCAGCTGCAGTACAAAAATCAGATGTCAAAAGACCAGCCAATCCA
CCTGTCAACAAGGAACTTCAAAACGCCATCCATCTCTCCTGAAGTTGATC
TCACATGGTTTCTTCTACTTGGTGTGGCATCTGCTGTGCGTTTATACAAG
TTATCAAAGCCAAATGCTGTTGTATGGAATTTGAAGAAGTCTCTAAGAAG
AGCACGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036568XLOC_036568Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058012-proteinTCONS_00058012-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058012-exon-scaffold_303-1575043694:33591..33775TCONS_00058012-exon-scaffold_303-1575043694:33591..33775Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1575043694:24765..24922TCONS_00058012-exon-scaffold_303-1575043694:24765..24922Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1575043694:24508..24611TCONS_00058012-exon-scaffold_303-1575043694:24508..24611Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1575043694:23893..23943TCONS_00058012-exon-scaffold_303-1575043694:23893..23943Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1575043694:23625..23713TCONS_00058012-exon-scaffold_303-1575043694:23625..23713Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1575043694:23114..23353TCONS_00058012-exon-scaffold_303-1575043694:23114..23353Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:33591..33775TCONS_00058012-exon-scaffold_303-1510915933:33591..33775Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:24765..24922TCONS_00058012-exon-scaffold_303-1510915933:24765..24922Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:24508..24611TCONS_00058012-exon-scaffold_303-1510915933:24508..24611Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:23893..23943TCONS_00058012-exon-scaffold_303-1510915933:23893..23943Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:23625..23713TCONS_00058012-exon-scaffold_303-1510915933:23625..23713Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1510915933:23114..23353TCONS_00058012-exon-scaffold_303-1510915933:23114..23353Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:33591..33775TCONS_00058012-exon-scaffold_303-1491911889:33591..33775Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:24765..24922TCONS_00058012-exon-scaffold_303-1491911889:24765..24922Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:24508..24611TCONS_00058012-exon-scaffold_303-1491911889:24508..24611Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:23893..23943TCONS_00058012-exon-scaffold_303-1491911889:23893..23943Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:23625..23713TCONS_00058012-exon-scaffold_303-1491911889:23625..23713Clytia hemisphaericaexon
TCONS_00058012-exon-scaffold_303-1491911889:23114..23353TCONS_00058012-exon-scaffold_303-1491911889:23114..23353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_303supercontigscaffold_303:23114..33775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1704	14.3312	5.13496	4.76939	51.1727	45.0255	50.8525	56.1063	26.0263	38.0502	21.7523	22.0604	13.4011	9.59533	15.158	14.7626	17.4968	19.1263	8.90969	9.51493	11.3785	13.32	14.6783	16.5164	10.8479	11.0567	6.61222	4.45246	15.6745	14.9312
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003342Glyco_trans_39/83
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0000030mannosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006493protein O-linked glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006493 protein O-linked glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0000030 mannosyltransferase activity
Blast
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BLAST of TCONS_00058012 vs. Swiss-Prot (Human)
Match: POMT2 (Protein O-mannosyl-transferase 2 OS=Homo sapiens GN=POMT2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.358e-23
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 3 
Query:  150 EFEEVSKKSTKKYKNQMSKDQPIHLSTRNFKTPSISPEV--DLTWFLLLGVAS----AVRLYKLSKPNAVVFDELHYGKFTSYFVQERFFFDVHPPLGKLLFAAAGYLTGFDGSFNFPKIGEEVPDSQVQSVMYLRMVTSFFSIFLVPLIYEIVLELS 605
            E      +   +      +D       R+ K P+        + W+ LL + +    A R ++L +P  + +DE H+GK  SY++   FFFDVHPPLGK+L   AGYL+G+DG+F F K G++    +  S M +R   +F   +LVP  Y  VL+LS
Sbjct:   13 ELRPRRGRCGPQAARAAGRDVAAEAVARSPKRPAWGSRRFEAVGWWALLALVTLLSFATRFHRLDEPPHICWDETHFGKMGSYYINRTFFFDVHPPLGKMLIGLAGYLSGYDGTFLFQKPGDKY---EHHSYMGMRGFCAFLGSWLVPFAYLTVLDLS 167
The following BLAST results are available for this feature:
BLAST of TCONS_00058012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POMT22.358e-2334.18Protein O-mannosyl-transferase 2 OS=Homo sapiens G... [more]
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