TCONS_00058080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058080
Unique NameTCONS_00058080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058080 ID=TCONS_00058080|Name=TCONS_00058080|organism=Clytia hemisphaerica|type=transcript|length=1585bp
AAGTCTCCTTTCTTGAATTAGCAATTGTTTTTGGATTATAAAATGTATGG
ACTTGGTAAAGAAAAGCCGTTCGTACCGATATTTGGTTGTCGAAAAAGAC
AGCAGCGCCACGCAGCCTACGCGAATCCAGATGAACTGTCTACTCTTCCA
TCTTCAAATTCAAACATACCAAGCAATCATAACGTCTCTCAAATATCGAT
GGGCTCTGactttgattgttttgatatcCCGATGATGGCTGATGAGAAGC
CACCTGTcacaaagaagaaaatcatGCATGAGCAAAAACCACCACGATAT
AAACAAAATCAAGAACAACAAAGAAACACTTTCCaacaacagaaaaaaac
aaaactaatGAAATCATTTTCCGAAAAACATGGGTCGTCTAATAACAGCA
AAACAATGGAGAAAACTGATTACATTCCGTCTTTTCAAAAACAACAACCC
TCCTATCAAAACCATTCTACCAGGAAATTTCCCGATCATGACGAAccaaa
acattatttttctcGACAACAACAAGGACAGAATCTTTCAACAACGATGC
AAGACCAAGGACCTTCTAGAAAGCCTTttgatgaaaaaactttttcatgc
CAACCGGGAAACACGCAAAGGTCCGGAGATTTCGGGAATAATGAATTCAA
TCAAGGCTCAAAAGCCTCGTCTTTGAAATACGTTGAAACGAAAAAGTTTC
CTCTGCAGGACGACTCAATGATGGATATTTCAACAATAAACCGATCTATC
ATAGTAAGGAATAAGACACAATCACTTGCTCCACGTTTTATAAGCTCTCG
TGTTGGTGACATAAAGAAATGGTTAGATTTGCCAATCAATGAAGAAACTT
CACAAATTGTCTTCGAGCTCGTCGGTATCTTAGATTCAACCATCTCGTAT
CATTTACCTGGAGTTGAAAAGAAATTCACATTAAAAGATTCCTCAGGAAC
CATTAGgtgCGTGTTTTGGGAGATGGTAAGCATTTACATTCATTCACCAT
CGTTATGGTCATCATAAGAAATCTTCAAGAGCAACATGAACTCCATAAAA
AGCTTTTTAGCTTCAAATCAGGAGTAATAAGATATTATTTTCTCATATAG
GACCGTAAAATTCCACAACTTCGACGTGGTAGTTTGATTCGATGTGTTGG
CAGAATGAGAGATAGCTCCATCTTTCACTGCGTCTCTGTTAGATCGATCG
CACCAAGTGAGCAATCAATACTTCAAAAGTTTCAACAGAATTGTCAACAG
TACCTTCAACATAAAATGACTACGTTTAATGAAGTCTGACTACTACAACC
GTTTTGCTTCTTTCATGCTCGGATGAACTATATTAGAGCTGTTGAATTAG
GCTGAATCGAACGCACTTAATAATAGCCTTTTTTAGCAGGCGTTAGAAAG
GAAAAGTGTCGGTTTATTTTCCACAAATATGCACGATCGATTTAATTATT
TTAGGACTTCCAAAAGGAAATGTTGCGTTTTAAGTTTTTAGCCTTGTAAT
TATATATTTTGTACCTTGAAATTtgcatttttaaacaattttatgTGACT
Atgttttgtgtttatcttgaattggaagaaagtca
Run BLAST on NCBI

transcript from alignment at scaffold_305:13380..17168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058080 ID=TCONS_00058080|Name=TCONS_00058080|organism=Clytia hemisphaerica|type=transcript|length=3789bp|location=Sequence derived from alignment at scaffold_305:13380..17168- (Clytia hemisphaerica)
AAGTCTCCTTTCTTGAATTAGCAATTGTTTTTGGATTATAAAATGTATGG
ACTTGGTAAAGGTAAGGAGACATACTTTCATCCTACCGTTTTATTATTTT
ATTACCGTTTTTTATTTACCTAACTTCACTTCACCCCTACCTTCCTTCTA
AAAAGTTATAAAAAGGACGATTTGATTTTTAGAGCAGAGTTTCTCTTCTC
GTTTATTCCTTATTCTTCATTCCCCACAAGTCTCGTCATATTTCTATTCG
CTCCTCTAAAAATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATT
AAATTATGTAGTCCAGCAGAAAAACAATGATGAGACCATGCATAATTATT
ACAATATGCATGATACAGTAATTATGCATGGCTCTATCATTGTTTTTATG
GCTGGACTACATAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTCTA
TTGCTAAGTCACTCCATGCAGATGCATCCAGCATCAGCATAAAACAAAAA
TTCCATAAAAAAGAAAAAAAGGCATAACACACGTTTTTTATAAGAACATT
CAAAATTTTTAATGTCTTCGACTGTTCTTAACTTTTTGAGTTTTAAACCT
AATAATATTAACATGTTTTTTTTTCCCCTAAGAAATAAATAGGGTGTTTT
TTTTTATTGGTGAGCCCACAAAGTCTTAAAATGTTCTTGACTTGTTCTTA
ACATCATAGCCATCGAAGCCATATGTTCTTTAGTTTGTTCTTATAAAAAA
ACGTGTAGGTTTTGAAATTAATAACGGTCGTCTGGCGGACCTAAAATGTT
TACTGCCTGTTGTCCCAAAAATTAAAAATCAGTACAGTATCCAATCAAAA
TTAACCCTGATCGGACACATTTTGTCCGACCAACCCGATGTCCTCGATTG
AAATCGTAAAATATTAAAGACATTTTTCGTTCGAATTTCTTTCCATAGAA
AAGCCGTTCGTACCGATATTTGGTTGTCGAAAAAGACAGCAGCGCCACGC
AGCCTACGCGAATCCAGATGAACTGTCTACTCTTCCATCTTCAAATTCAA
ACATACCAAGCAATCATAACGTCTCTCAAATATCGATGGGCTCTGACTTT
GATTGTTTTGATATCCCGATGATGGCTGATGAGAAGCCACCTGTCACAAA
GAAGAAAATCATGCATGAGCAAAAACCACCACGATATAAACAAAATCAAG
AACAACAAAGAAACACTTTCCAACAACAGAAAAAAACAAAACTAATGAAA
TCATTTTCCGAAAAACATGGGTCGTCTAATAACAGCAAAACAATGGAGAA
AACTGATTACATTCCGTCTTTTCAAAAACAACAACCCTCCTATCAAAACC
ATTCTACCAGGAAATTTCCCGATCATGACGAACCAAAACATTATTTTTCT
CGACAACAACAAGGACAGAATCTTTCAACAACGATGCAAGACCAAGGACC
TTCTAGAAAGCCTTTTGATGAAAAAACTTTTTCATGCCAACCGGGAAACA
CGCAAAGGTGATTCTTCATTTAAACCAGGAAAAATCAATTAAAGTCACAT
TGATATAGGTTTTTCATTCATTGTAAAAAGCCGAAATATTTTTGAAAGGT
TTCTGATTTGAAAAGTCAAATAAGATAAAACTTGACAACATTTTCAGTCG
GACTGGTCGCACCTTTTTTGAACGATTAATTTATTTAATTTTTTTTTACT
TTGCTGCACCTTTTCTCATAGGTCCGGAGATTTCGGGAATAATGAATTCA
ATCAAGGCTCAAAAGCCTCGTCTTTGAAATACGTTGAAACGAAAAAGGTA
TAAAAAACTGATAATTCTTTGTAACTCAGCGGTTTCATTTTTGCAATATT
CAATTTCGCGGAGGAGCTGAAATCTACTGAAGATAGATAGCCTTGAAAAC
TCTTCGTCTAAAATAGAAATTACGAATTTTCAATCACAAATTTGATTTGA
TTTTGAAAATTTCGCATGAATTTAACTCGCGAGAGTCAGCAGAGCACACT
GTTTTTGCAAGATCTATTTTCGCGAAAAAGGTAGAAATTTACAGCAATGC
GAAGTTTAATCTCATGAAAATAATCCGATTAAAGTGAGGTGTAAGGCTGG
CAGTATCTTGATAAAGTAACGAAATAATCAATAATGATAGTTTCCTCTGC
AGGACGACTCAATGATGGATATTTCAACAATAAACCGATCTATCATAGTA
AGGAATAAGACACAATCACTTGCTCCACGTTTTATAAGCTCTCGTGTTGG
TGACATAAAGAAATGGTTAGATTTGCCAATCAATGAAGAAACTTCACAAA
TTGTCTTCGAGCTCGTCGGTAAAGTTATTGATAATGTTGAATTTTATACA
CTTTTTCGATCGTAGCCGCCAATTGCCGCGCGGGCGATTTTTTGTCCGTT
TTACCACCCTAAAACCGCCCCAGTCTTTTTTTGCACCTATAAAAGCAATA
GAAAAAAGTGTAAAAAAGGATTGGATCAAGTTTAGGGTGATAAATTAAAT
AATAAAGTGGCACGCGCCTGACCGCGATCGAAAAGGTGTATTCTCTTAGA
ATTTTGTTGGTCAGTTTGATTGATTTGTTTTTGTATTTCTAGTTGTGTAT
GTAGGGATATTTTGACTAAAACTTTCATGACTGAATATCTAAGACCCTTC
TTTATTACCTTAGGTATCTTAGATTCAACCATCTCGTATCATTTACCTGG
AGTTGAAAAGAAATTCACATTAAAAGATTCCTCAGGAACCATTAGGTAGG
TAAGGTTTTTTATCCGAAACTTGCTTGATTACACCCGTGTCTCAGTGAGT
GATTGTTTTTCAGACAGGTAAAATTCAGTAGAATGGCCATATTTTTAAAC
CAATCTTAATATTACTCTTGGGTATACTTATTTTTCTCCACAATTTCATT
ATTATTCAGAGCAATGAACGGAAGACGAAAAATGATTTTAACATAACTGA
GTGTAAATTTTCACCTTATTTTATTTTCAGGTGCGTGTTTTGGGAGATGG
TAAGCATTTACATTCATTCACCATCGTTATGGTCATCATAAGAAATCTTC
AAGAGCAACATGAACTCCATAAAAAGCTTTTTAGCTTCAAATCAGGAGTA
ATAAGATATTATTTTCTCATATAGGACCGTAAAATTCCACAACTTCGACG
TGGTAGTTTGATTCGGTAAGTTTGGTAATATATCATCTTTTTAGTCGAAA
ACGAACTGCTACATCCCTGTCTCAGTGACTTGGAGATCAGTGAGATAAAA
CGAACTCTAATAGTGGAAGTAAGCTAAGGATTAGTACAGTAAACATTTGT
TAAAGAACAGGTTTACTTAAGAAATCAAATGTTCTTCTATTCTAGATGTG
TTGGCAGAATGAGAGATAGCTCCATCTTTCACTGCGTCTCTGTTAGATCG
ATCGCACCAAGTGAGCAATCAATACTTCAAAAGTTTCAACAGAATTGTCA
ACAGTACCTTCAACATAAAATGACTACGTTTAATGAAGTCTGACTACTAC
AACCGTTTTGCTTCTTTCATGCTCGGATGAACTATATTAGAGCTGTTGAA
TTAGGCTGAATCGAACGCACTTAATAATAGCCTTTTTTAGCAGGCGTTAG
AAAGGAAAAGTGTCGGTTTATTTTCCACAAATATGCACGATCGATTTAAT
TATTTTAGGACTTCCAAAAGGAAATGTTGCGTTTTAAGTTTTTAGCCTTG
TAATTATATATTTTGTACCTTGAAATTTGCATTTTTAAACAATTTTATGT
GACTATGTTTTGTGTTTATCTTGAATTGGAAGAAAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036601XLOC_036601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058080-exon-scaffold_305-1575043694:17108..17168TCONS_00058080-exon-scaffold_305-1575043694:17108..17168Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:15662..16220TCONS_00058080-exon-scaffold_305-1575043694:15662..16220Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:15372..15447TCONS_00058080-exon-scaffold_305-1575043694:15372..15447Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:14851..15028TCONS_00058080-exon-scaffold_305-1575043694:14851..15028Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:14424..14505TCONS_00058080-exon-scaffold_305-1575043694:14424..14505Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:14004..14188TCONS_00058080-exon-scaffold_305-1575043694:14004..14188Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1575043694:13380..13823TCONS_00058080-exon-scaffold_305-1575043694:13380..13823Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:17108..17168TCONS_00058080-exon-scaffold_305-1510915933:17108..17168Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:15662..16220TCONS_00058080-exon-scaffold_305-1510915933:15662..16220Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:15372..15447TCONS_00058080-exon-scaffold_305-1510915933:15372..15447Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:14851..15028TCONS_00058080-exon-scaffold_305-1510915933:14851..15028Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:14424..14505TCONS_00058080-exon-scaffold_305-1510915933:14424..14505Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:14004..14188TCONS_00058080-exon-scaffold_305-1510915933:14004..14188Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1510915933:13380..13823TCONS_00058080-exon-scaffold_305-1510915933:13380..13823Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:17108..17168TCONS_00058080-exon-scaffold_305-1491911889:17108..17168Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:15662..16220TCONS_00058080-exon-scaffold_305-1491911889:15662..16220Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:15372..15447TCONS_00058080-exon-scaffold_305-1491911889:15372..15447Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:14851..15028TCONS_00058080-exon-scaffold_305-1491911889:14851..15028Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:14424..14505TCONS_00058080-exon-scaffold_305-1491911889:14424..14505Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:14004..14188TCONS_00058080-exon-scaffold_305-1491911889:14004..14188Clytia hemisphaericaexon
TCONS_00058080-exon-scaffold_305-1491911889:13380..13823TCONS_00058080-exon-scaffold_305-1491911889:13380..13823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:13380..17168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103133	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.952797	1.13118	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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