TCONS_00058082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058082
Unique NameTCONS_00058082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058082 ID=TCONS_00058082|Name=TCONS_00058082|organism=Clytia hemisphaerica|type=transcript|length=1520bp
TTTTGGTCACTTTTCAGTTTACGTTTTGCGGTCGGTTGCTTGGTTGAACT
TGGTTGATCTCTTTTTAGTTccatttaaaattttatcaccTTGCCATCAC
CTAATTTGCATATAAGTCTCCTTTCTTGAATTAGCAATTGTTTTTGGATT
ATAAAATGTATGGACTTGGTAAAGAAAAGCCGTTCGTACCGATATTTGGT
TGTCGAAAAAGACAGCAGCGCCACGCAGCCTACGCGAATCCAGATGAACT
GTCTACTCTTCCATCTTCAAATTCAAACATACCAAGCAATCATAACGTCT
CTCAAATATCGATGGGCTCTGactttgattgttttgatatcCCGATGATG
GCTGATGAGAAGCCACCTGTcacaaagaagaaaatcatGCATGAGCAAAA
ACCACCACGATATAAACAAAATCAAGAACAACAAAGAAACACTTTCCaac
aacagaaaaaaacaaaactaatGAAATCATTTTCCGAAAAACATGGGTCG
TCTAATAACAGCAAAACAATGGAGAAAACTGATTACATTCCGTCTTTTCA
AAAACAACAACCCTCCTATCAAAACCATTCTACCAGGAAATTTCCCGATC
ATGACGAAccaaaacattatttttctcGACAACAACAAGGACAGAATCTT
TCAACAACGATGCAAGACCAAGGACCTTCTAGAAAGCCTTttgatgaaaa
aactttttcatgcCAACCGGGAAACACGCAAAGGTCCGGAGATTTCGGGA
ATAATGAATTCAATCAAGGCTCAAAAGCCTCGTCTTTGAAATACGTTGAA
ACGAAAAAGGACGACTCAATGATGGATATTTCAACAATAAACCGATCTAT
CATAGTAAGGAATAAGACACAATCACTTGCTCCACGTTTTATAAGCTCTC
GTGTTGGTGACATAAAGAAATGGTTAGATTTGCCAATCAATGAAGAAACT
TCACAAATTGTCTTCGAGCTCGTCGGTATCTTAGATTCAACCATCTCGTA
TCATTTACCTGGAGTTGAAAAGAAATTCACATTAAAAGATTCCTCAGGAA
CCATTAGgtgCGTGTTTTGGGAGATGATGTGTTGGCAGAATGAGAGATAG
CTCCATCTTTCACTGCGTCTCTGTTAGATCGATCGCACCAAGTGAGCAAT
CAATACTTCAAAAGTTTCAACAGAATTGTCAACAGTACCTTCAACATAAA
ATGACTACGTTTAATGAAGTCTGACTACTACAACCGTTTTGCTTCTTTCA
TGCTCGGATGAACTATATTAGAGCTGTTGAATTAGGCTGAATCGAACGCA
CTTAATAATAGCCTTTTTTAGCAGGCGTTAGAAAGGAAAAGTGTCGGTTT
ATTTTCCACAAATATGCACGATCGATTTAATTATTTTAGGACTTCCAAAA
GGAAATGTTGCGTTTTAAGTTTTTAGCCTTGTAATTATATATTTTGTACC
TTGAAATTtgcatttttaaacaattttatgTGACTAtgttttgtgtttat
cttgaattggaagaaagtca
Run BLAST on NCBI

transcript from alignment at scaffold_305:13380..17281-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058082 ID=TCONS_00058082|Name=TCONS_00058082|organism=Clytia hemisphaerica|type=transcript|length=3902bp|location=Sequence derived from alignment at scaffold_305:13380..17281- (Clytia hemisphaerica)
TTTTGGTCACTTTTCAGTTTACGTTTTGCGGTCGGTTGCTTGGTTGAACT
TGGTTGATCTCTTTTTAGTTCCATTTAAAATTTTATCACCTTGCCATCAC
CTAATTTGCATATAAGTCTCCTTTCTTGAATTAGCAATTGTTTTTGGATT
ATAAAATGTATGGACTTGGTAAAGGTAAGGAGACATACTTTCATCCTACC
GTTTTATTATTTTATTACCGTTTTTTATTTACCTAACTTCACTTCACCCC
TACCTTCCTTCTAAAAAGTTATAAAAAGGACGATTTGATTTTTAGAGCAG
AGTTTCTCTTCTCGTTTATTCCTTATTCTTCATTCCCCACAAGTCTCGTC
ATATTTCTATTCGCTCCTCTAAAAATAGACCTTTTTTCAAAGAGGCCACC
CTGTTGAATAATTAAATTATGTAGTCCAGCAGAAAAACAATGATGAGACC
ATGCATAATTATTACAATATGCATGATACAGTAATTATGCATGGCTCTAT
CATTGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGTCCTCTTT
GAAAAAAGGTCTATTGCTAAGTCACTCCATGCAGATGCATCCAGCATCAG
CATAAAACAAAAATTCCATAAAAAAGAAAAAAAGGCATAACACACGTTTT
TTATAAGAACATTCAAAATTTTTAATGTCTTCGACTGTTCTTAACTTTTT
GAGTTTTAAACCTAATAATATTAACATGTTTTTTTTTCCCCTAAGAAATA
AATAGGGTGTTTTTTTTTATTGGTGAGCCCACAAAGTCTTAAAATGTTCT
TGACTTGTTCTTAACATCATAGCCATCGAAGCCATATGTTCTTTAGTTTG
TTCTTATAAAAAAACGTGTAGGTTTTGAAATTAATAACGGTCGTCTGGCG
GACCTAAAATGTTTACTGCCTGTTGTCCCAAAAATTAAAAATCAGTACAG
TATCCAATCAAAATTAACCCTGATCGGACACATTTTGTCCGACCAACCCG
ATGTCCTCGATTGAAATCGTAAAATATTAAAGACATTTTTCGTTCGAATT
TCTTTCCATAGAAAAGCCGTTCGTACCGATATTTGGTTGTCGAAAAAGAC
AGCAGCGCCACGCAGCCTACGCGAATCCAGATGAACTGTCTACTCTTCCA
TCTTCAAATTCAAACATACCAAGCAATCATAACGTCTCTCAAATATCGAT
GGGCTCTGACTTTGATTGTTTTGATATCCCGATGATGGCTGATGAGAAGC
CACCTGTCACAAAGAAGAAAATCATGCATGAGCAAAAACCACCACGATAT
AAACAAAATCAAGAACAACAAAGAAACACTTTCCAACAACAGAAAAAAAC
AAAACTAATGAAATCATTTTCCGAAAAACATGGGTCGTCTAATAACAGCA
AAACAATGGAGAAAACTGATTACATTCCGTCTTTTCAAAAACAACAACCC
TCCTATCAAAACCATTCTACCAGGAAATTTCCCGATCATGACGAACCAAA
ACATTATTTTTCTCGACAACAACAAGGACAGAATCTTTCAACAACGATGC
AAGACCAAGGACCTTCTAGAAAGCCTTTTGATGAAAAAACTTTTTCATGC
CAACCGGGAAACACGCAAAGGTGATTCTTCATTTAAACCAGGAAAAATCA
ATTAAAGTCACATTGATATAGGTTTTTCATTCATTGTAAAAAGCCGAAAT
ATTTTTGAAAGGTTTCTGATTTGAAAAGTCAAATAAGATAAAACTTGACA
ACATTTTCAGTCGGACTGGTCGCACCTTTTTTGAACGATTAATTTATTTA
ATTTTTTTTTACTTTGCTGCACCTTTTCTCATAGGTCCGGAGATTTCGGG
AATAATGAATTCAATCAAGGCTCAAAAGCCTCGTCTTTGAAATACGTTGA
AACGAAAAAGGTATAAAAAACTGATAATTCTTTGTAACTCAGCGGTTTCA
TTTTTGCAATATTCAATTTCGCGGAGGAGCTGAAATCTACTGAAGATAGA
TAGCCTTGAAAACTCTTCGTCTAAAATAGAAATTACGAATTTTCAATCAC
AAATTTGATTTGATTTTGAAAATTTCGCATGAATTTAACTCGCGAGAGTC
AGCAGAGCACACTGTTTTTGCAAGATCTATTTTCGCGAAAAAGGTAGAAA
TTTACAGCAATGCGAAGTTTAATCTCATGAAAATAATCCGATTAAAGTGA
GGTGTAAGGCTGGCAGTATCTTGATAAAGTAACGAAATAATCAATAATGA
TAGTTTCCTCTGCAGGACGACTCAATGATGGATATTTCAACAATAAACCG
ATCTATCATAGTAAGGAATAAGACACAATCACTTGCTCCACGTTTTATAA
GCTCTCGTGTTGGTGACATAAAGAAATGGTTAGATTTGCCAATCAATGAA
GAAACTTCACAAATTGTCTTCGAGCTCGTCGGTAAAGTTATTGATAATGT
TGAATTTTATACACTTTTTCGATCGTAGCCGCCAATTGCCGCGCGGGCGA
TTTTTTGTCCGTTTTACCACCCTAAAACCGCCCCAGTCTTTTTTTGCACC
TATAAAAGCAATAGAAAAAAGTGTAAAAAAGGATTGGATCAAGTTTAGGG
TGATAAATTAAATAATAAAGTGGCACGCGCCTGACCGCGATCGAAAAGGT
GTATTCTCTTAGAATTTTGTTGGTCAGTTTGATTGATTTGTTTTTGTATT
TCTAGTTGTGTATGTAGGGATATTTTGACTAAAACTTTCATGACTGAATA
TCTAAGACCCTTCTTTATTACCTTAGGTATCTTAGATTCAACCATCTCGT
ATCATTTACCTGGAGTTGAAAAGAAATTCACATTAAAAGATTCCTCAGGA
ACCATTAGGTAGGTAAGGTTTTTTATCCGAAACTTGCTTGATTACACCCG
TGTCTCAGTGAGTGATTGTTTTTCAGACAGGTAAAATTCAGTAGAATGGC
CATATTTTTAAACCAATCTTAATATTACTCTTGGGTATACTTATTTTTCT
CCACAATTTCATTATTATTCAGAGCAATGAACGGAAGACGAAAAATGATT
TTAACATAACTGAGTGTAAATTTTCACCTTATTTTATTTTCAGGTGCGTG
TTTTGGGAGATGGTAAGCATTTACATTCATTCACCATCGTTATGGTCATC
ATAAGAAATCTTCAAGAGCAACATGAACTCCATAAAAAGCTTTTTAGCTT
CAAATCAGGAGTAATAAGATATTATTTTCTCATATAGGACCGTAAAATTC
CACAACTTCGACGTGGTAGTTTGATTCGGTAAGTTTGGTAATATATCATC
TTTTTAGTCGAAAACGAACTGCTACATCCCTGTCTCAGTGACTTGGAGAT
CAGTGAGATAAAACGAACTCTAATAGTGGAAGTAAGCTAAGGATTAGTAC
AGTAAACATTTGTTAAAGAACAGGTTTACTTAAGAAATCAAATGTTCTTC
TATTCTAGATGTGTTGGCAGAATGAGAGATAGCTCCATCTTTCACTGCGT
CTCTGTTAGATCGATCGCACCAAGTGAGCAATCAATACTTCAAAAGTTTC
AACAGAATTGTCAACAGTACCTTCAACATAAAATGACTACGTTTAATGAA
GTCTGACTACTACAACCGTTTTGCTTCTTTCATGCTCGGATGAACTATAT
TAGAGCTGTTGAATTAGGCTGAATCGAACGCACTTAATAATAGCCTTTTT
TAGCAGGCGTTAGAAAGGAAAAGTGTCGGTTTATTTTCCACAAATATGCA
CGATCGATTTAATTATTTTAGGACTTCCAAAAGGAAATGTTGCGTTTTAA
GTTTTTAGCCTTGTAATTATATATTTTGTACCTTGAAATTTGCATTTTTA
AACAATTTTATGTGACTATGTTTTGTGTTTATCTTGAATTGGAAGAAAGT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036601XLOC_036601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058082-exon-scaffold_305-1575043694:17108..17281TCONS_00058082-exon-scaffold_305-1575043694:17108..17281Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:15662..16220TCONS_00058082-exon-scaffold_305-1575043694:15662..16220Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:15372..15447TCONS_00058082-exon-scaffold_305-1575043694:15372..15447Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:14851..15016TCONS_00058082-exon-scaffold_305-1575043694:14851..15016Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:14424..14505TCONS_00058082-exon-scaffold_305-1575043694:14424..14505Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:14170..14188TCONS_00058082-exon-scaffold_305-1575043694:14170..14188Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1575043694:13380..13823TCONS_00058082-exon-scaffold_305-1575043694:13380..13823Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:17108..17281TCONS_00058082-exon-scaffold_305-1510915933:17108..17281Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:15662..16220TCONS_00058082-exon-scaffold_305-1510915933:15662..16220Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:15372..15447TCONS_00058082-exon-scaffold_305-1510915933:15372..15447Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:14851..15016TCONS_00058082-exon-scaffold_305-1510915933:14851..15016Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:14424..14505TCONS_00058082-exon-scaffold_305-1510915933:14424..14505Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:14170..14188TCONS_00058082-exon-scaffold_305-1510915933:14170..14188Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1510915933:13380..13823TCONS_00058082-exon-scaffold_305-1510915933:13380..13823Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:17108..17281TCONS_00058082-exon-scaffold_305-1491911889:17108..17281Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:15662..16220TCONS_00058082-exon-scaffold_305-1491911889:15662..16220Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:15372..15447TCONS_00058082-exon-scaffold_305-1491911889:15372..15447Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:14851..15016TCONS_00058082-exon-scaffold_305-1491911889:14851..15016Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:14424..14505TCONS_00058082-exon-scaffold_305-1491911889:14424..14505Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:14170..14188TCONS_00058082-exon-scaffold_305-1491911889:14170..14188Clytia hemisphaericaexon
TCONS_00058082-exon-scaffold_305-1491911889:13380..13823TCONS_00058082-exon-scaffold_305-1491911889:13380..13823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:13380..17281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0527786	0	0.0599539	0.0729881	0	0.0347919	0.0325718	0	0.0282468	0.164502	0	0.0359956	0.0186909	0	0.0329811	0	0	0.0575341	0.0602053	0	0	0	0.112837	2.71934	0.682946	0	0.0396014	0.0600725	0.122409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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