TCONS_00058155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058155
Unique NameTCONS_00058155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=transcript|length=1270bp
GATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTATCTAAAATAATG
GAATTAATACCGTAtttatttgtttgcttgtttgttAACTCAATCTATTT
TCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTCCGGGTTTCTACA
AATGCTTCAGAGCGATCTTTATCCCTTAACAAAGCTTCAAGGTACATTGA
ATCGGAAGTTTTGAGatttgatgGTAAGTGACATTGTATTTGTGGTGATC
TTTCTCTTCGTCCCATCTTTACCACAAGCGTACTACCTTGTCTCATTTTC
GTGGTTTGCACTGTTACTTATAAATTGGAGTTTCATAAATTGTTGGAATC
GTTGGGAAGGAATAAGAATCATAAAAGAATGGGGCACAGATGACAACGGT
AATCCAAAATGTACCAAGCGGTATAGACACTCGATGAAAGAAATCAAGGA
AATTCTGGATGAAAATTTACCAAAGGAGCCGAAAGTGATTGTTCAATGCG
AAGCTGTGGAACCTCGAACTTCGTGCTGCAGAAAACAACGCGTTAGTTGG
AGCAATCAGAAAGAGTTTGAATTTCAACATTGGATCGATGTGACTGAACA
ACATTTGGTGAAATCACAAATTGAAGAAGCGATTTTTGgtgaattgaaaa
ttgatttcgaATTTGATGACGAAGAAACGAAGGAATCATATGAACAACAC
GTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCTCCACACGCTCAAGT
CAACGTCAAGCAACTTTTCCAAGTCGGTGAAAAAGATATCAAAACCTACA
GACGGTCGTTTTATGGCAAGAAGGCTCTTTTTGGAAGACCATGGGTGTGT
CTTCAATGCGTTTTTCCTCAGATCGAACTTTcgttcaaaatattgaaatg
gtttctcgaaaaaattggcttcaaaagtttattgaccaaagaaattgtaa
tcaGAAAAGTAATATCTGACAGAAATATTGTATCTGTATAGCATTTGTGA
TCAATAATTTTATACCATTTTGAATAGTATAACATGGCGAAGACCTGTTC
CACGGGACGTTACGGTCTTTGTGTCTTAAACATTAAGCTATTCAACTTAC
AGTAAACCAATCAATCTGCTATACAGACCTGTTaggaaaaatttatttac
acTATAGCTCTTAAAACATCCATCCACGAAagttagaatttagaaaatat
acAAACTCTTTCAAAATCAGCCTCTTGAAAACACTTTTCATAAAAGCCAG
TAAGTTCGGTTGAAGCTGCG
Run BLAST on NCBI

protein sequence of TCONS_00058155-protein

>TCONS_00058155-protein ID=TCONS_00058155-protein|Name=TCONS_00058155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MVSDIVFVVIFLFVPSLPQAYYLVSFSWFALLLINWSFINCWNRWEGIRI
IKEWGTDDNGNPKCTKRYRHSMKEIKEILDENLPKEPKVIVQCEAVEPRT
SCCRKQRVSWSNQKEFEFQHWIDVTEQHLVKSQIEEAIFGELKIDFEFDD
EETKESYEQHVQNLVKEAKQHSPHAQVNVKQLFQVGEKDIKTYRRSFYGK
KALFGRPWVCLQCVFPQIELSFKILKWFLEKIGFKSLLTKEIVIRKVISD
RNIVSV
Run BLAST on NCBI

transcript from alignment at scaffold_307:84736..86683-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at scaffold_307:84736..86683- (Clytia hemisphaerica)
GATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTATCTAAAATAATG GAATTAATACCGTATTTATTTGTTTGCTTGTTTGTTAACTCAATCTATTT TCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTCCGGGTTTCTACA AATGCTTCAGAGCGATCTTTATCCCTTGTAAGTTTTAAGAATCCTTTTAA GAAAGAAATACTTTACACATGAACTTTAGCATATCCTTCTCAAATCGAAT CGCTCTTAATATAGTAGCCAAAAGTTAAGTTAATTTTAGTTAAAATACAC GTGTTCAGATGCTCTTAACTTTTAGAGTTTTAAGCCTAAAAATGTTCTTA ACATGTTCTTATATTTCAGCCATTGAAATCTCATCTTATGATATATTTTG CTCTTATAAACGTGCATCACTTTTAGAACAAAGCTTCAAGGTACATTGAA TCGGAAGTTTTGAGGTAAAGACATTATCCGGATATAGTTACATTATCAGT ATGTACTATCTGTTCAATAATAGTGAACATAAATAGTCAATTCCAGAAGA AATCAGCACTTTTTGATACATTTTTCTTTTTCAAAGCAACGGCAATACAC CCTTGTCTCCCGGCCCAGGTGGAACTTCTTCCCACAATGGGGATGAAAAT TGTCTAACGAAATCCGCATGGGAATAGTAATTCTATTGTTCTCATGTCAA AAAATCGAATGGGGATGGGTTTGGAGTGGAATTTTTCTACATTGAATATC TGATGGAAATTAAAATAACAAGTCAAGTTACCATATATTAGGGCTGAAAT TGTTGGGTATTTTCCCACCAGGAGAAAGTTTAGCCAAACATTCCATCTGG TCTATTACGCGGAGGTCTAACAATATTCATTTCAAATTTTCAGATTTGAT GGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTTAC CACAAGCGTACTACCTTGTCTCATTTTCGTGGTTTGCACTGTTACTTATA AATTGGAGTTTCATAAATTGTTGGAATCGTTGGGAAGGAATAAGAATCAT AAAAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACCAAGCGGT ATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCA AAGGAGCCGAAAGTGATTGTTCAATGCGAAGCTGTGGAACCTCGAACTTC GTGCTGCAGAAAACAACGCGTTAGTTGGAGCAATCAGAAAGAGTTTGAAT TTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAATT GAAGAAGCGATTTTTGGTGAATTGAAAATTGATTTCGAATTTGATGACGA AGAAACGAAGGAATCATATGAACAACACGTTCAGAATCTTGTAAAAGAAG CAAAGCAACATTCTCCACACGCTCAAGTCAACGTCAAGCAACTTTTCCAA GTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGCAAGAA GGCTCTTTTTGGAAGACCATGGGTGTGTCTTCAATGCGTTTTTCCTCAGA TCGAACTTTCGTTCAAAATATTGAAATGGTTTCTCGAAAAAATTGGCTTC AAAAGTTTATTGACCAAAGAAATTGTAATCAGAAAAGTAATATCTGACAG AAATATTGTATCTGTATAGCATTTGTGATCAATAATTTTATACCATTTTG AATAGTATAACATGGCGAAGACCTGTTCCACGGGACGTTACGGTCTTTGT GTCTTAAACATTAAGCTATTCAACTTACAGTAAACCAATCAATCTGCTAT ACAGACCTGTTAGGAAAAATTTATTTACACTATAGCTCTTAAAACATCCA TCCACGAAAGTTAGAATTTAGAAAATATACAAACTCTTTCAAAATCAGCC TCTTGAAAACACTTTTCATAAAAGCCAGTAAGTTCGGTTGAAGCTGCG

Coding sequence (CDS) from alignment at scaffold_307:84736..86683-

>TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_307:84736..86683- (Clytia hemisphaerica)
ATGGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTT
ACCACAAGCGTACTACCTTGTCTCATTTTCGTGGTTTGCACTGTTACTTA
TAAATTGGAGTTTCATAAATTGTTGGAATCGTTGGGAAGGAATAAGAATC
ATAAAAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACCAAGCG
GTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTAC
CAAAGGAGCCGAAAGTGATTGTTCAATGCGAAGCTGTGGAACCTCGAACT
TCGTGCTGCAGAAAACAACGCGTTAGTTGGAGCAATCAGAAAGAGTTTGA
ATTTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAA
TTGAAGAAGCGATTTTTGGTGAATTGAAAATTGATTTCGAATTTGATGAC
GAAGAAACGAAGGAATCATATGAACAACACGTTCAGAATCTTGTAAAAGA
AGCAAAGCAACATTCTCCACACGCTCAAGTCAACGTCAAGCAACTTTTCC
AAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGCAAG
AAGGCTCTTTTTGGAAGACCATGGGTGTGTCTTCAATGCGTTTTTCCTCA
GATCGAACTTTCGTTCAAAATATTGAAATGGTTTCTCGAAAAAATTGGCT
TCAAAAGTTTATTGACCAAAGAAATTGTAATCAGAAAAGTAATATCTGAC
AGAAATATTGTATCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036643XLOC_036643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058155-exon-scaffold_307-1575043694:86507..86683TCONS_00058155-exon-scaffold_307-1575043694:86507..86683Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1575043694:86220..86257TCONS_00058155-exon-scaffold_307-1575043694:86220..86257Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1575043694:84736..85790TCONS_00058155-exon-scaffold_307-1575043694:84736..85790Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1510915933:86507..86683TCONS_00058155-exon-scaffold_307-1510915933:86507..86683Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1510915933:86220..86257TCONS_00058155-exon-scaffold_307-1510915933:86220..86257Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1510915933:84736..85790TCONS_00058155-exon-scaffold_307-1510915933:84736..85790Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1491911889:86507..86683TCONS_00058155-exon-scaffold_307-1491911889:86507..86683Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1491911889:86220..86257TCONS_00058155-exon-scaffold_307-1491911889:86220..86257Clytia hemisphaericaexon
TCONS_00058155-exon-scaffold_307-1491911889:84736..85790TCONS_00058155-exon-scaffold_307-1491911889:84736..85790Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058155-proteinTCONS_00058155-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:84736..86683 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.53436 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 2.23858 2.53436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Sequence
Match NameE-valueIdentityDescription
back to top