Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=transcript|length=1270bp GATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTATCTAAAATAATG GAATTAATACCGTAtttatttgtttgcttgtttgttAACTCAATCTATTT TCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTCCGGGTTTCTACA AATGCTTCAGAGCGATCTTTATCCCTTAACAAAGCTTCAAGGTACATTGA ATCGGAAGTTTTGAGatttgatgGTAAGTGACATTGTATTTGTGGTGATC TTTCTCTTCGTCCCATCTTTACCACAAGCGTACTACCTTGTCTCATTTTC GTGGTTTGCACTGTTACTTATAAATTGGAGTTTCATAAATTGTTGGAATC GTTGGGAAGGAATAAGAATCATAAAAGAATGGGGCACAGATGACAACGGT AATCCAAAATGTACCAAGCGGTATAGACACTCGATGAAAGAAATCAAGGA AATTCTGGATGAAAATTTACCAAAGGAGCCGAAAGTGATTGTTCAATGCG AAGCTGTGGAACCTCGAACTTCGTGCTGCAGAAAACAACGCGTTAGTTGG AGCAATCAGAAAGAGTTTGAATTTCAACATTGGATCGATGTGACTGAACA ACATTTGGTGAAATCACAAATTGAAGAAGCGATTTTTGgtgaattgaaaa ttgatttcgaATTTGATGACGAAGAAACGAAGGAATCATATGAACAACAC GTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCTCCACACGCTCAAGT CAACGTCAAGCAACTTTTCCAAGTCGGTGAAAAAGATATCAAAACCTACA GACGGTCGTTTTATGGCAAGAAGGCTCTTTTTGGAAGACCATGGGTGTGT CTTCAATGCGTTTTTCCTCAGATCGAACTTTcgttcaaaatattgaaatg gtttctcgaaaaaattggcttcaaaagtttattgaccaaagaaattgtaa tcaGAAAAGTAATATCTGACAGAAATATTGTATCTGTATAGCATTTGTGA TCAATAATTTTATACCATTTTGAATAGTATAACATGGCGAAGACCTGTTC CACGGGACGTTACGGTCTTTGTGTCTTAAACATTAAGCTATTCAACTTAC AGTAAACCAATCAATCTGCTATACAGACCTGTTaggaaaaatttatttac acTATAGCTCTTAAAACATCCATCCACGAAagttagaatttagaaaatat acAAACTCTTTCAAAATCAGCCTCTTGAAAACACTTTTCATAAAAGCCAG TAAGTTCGGTTGAAGCTGCG Run BLAST on NCBI protein sequence of TCONS_00058155-protein >TCONS_00058155-protein ID=TCONS_00058155-protein|Name=TCONS_00058155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MVSDIVFVVIFLFVPSLPQAYYLVSFSWFALLLINWSFINCWNRWEGIRI IKEWGTDDNGNPKCTKRYRHSMKEIKEILDENLPKEPKVIVQCEAVEPRT SCCRKQRVSWSNQKEFEFQHWIDVTEQHLVKSQIEEAIFGELKIDFEFDD EETKESYEQHVQNLVKEAKQHSPHAQVNVKQLFQVGEKDIKTYRRSFYGK KALFGRPWVCLQCVFPQIELSFKILKWFLEKIGFKSLLTKEIVIRKVISD RNIVSV Run BLAST on NCBI transcript from alignment at scaffold_307:84736..86683- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at scaffold_307:84736..86683- (Clytia hemisphaerica) GATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTATCTAAAATAATG
GAATTAATACCGTATTTATTTGTTTGCTTGTTTGTTAACTCAATCTATTT
TCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTCCGGGTTTCTACA
AATGCTTCAGAGCGATCTTTATCCCTTGTAAGTTTTAAGAATCCTTTTAA
GAAAGAAATACTTTACACATGAACTTTAGCATATCCTTCTCAAATCGAAT
CGCTCTTAATATAGTAGCCAAAAGTTAAGTTAATTTTAGTTAAAATACAC
GTGTTCAGATGCTCTTAACTTTTAGAGTTTTAAGCCTAAAAATGTTCTTA
ACATGTTCTTATATTTCAGCCATTGAAATCTCATCTTATGATATATTTTG
CTCTTATAAACGTGCATCACTTTTAGAACAAAGCTTCAAGGTACATTGAA
TCGGAAGTTTTGAGGTAAAGACATTATCCGGATATAGTTACATTATCAGT
ATGTACTATCTGTTCAATAATAGTGAACATAAATAGTCAATTCCAGAAGA
AATCAGCACTTTTTGATACATTTTTCTTTTTCAAAGCAACGGCAATACAC
CCTTGTCTCCCGGCCCAGGTGGAACTTCTTCCCACAATGGGGATGAAAAT
TGTCTAACGAAATCCGCATGGGAATAGTAATTCTATTGTTCTCATGTCAA
AAAATCGAATGGGGATGGGTTTGGAGTGGAATTTTTCTACATTGAATATC
TGATGGAAATTAAAATAACAAGTCAAGTTACCATATATTAGGGCTGAAAT
TGTTGGGTATTTTCCCACCAGGAGAAAGTTTAGCCAAACATTCCATCTGG
TCTATTACGCGGAGGTCTAACAATATTCATTTCAAATTTTCAGATTTGAT
GGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTTAC
CACAAGCGTACTACCTTGTCTCATTTTCGTGGTTTGCACTGTTACTTATA
AATTGGAGTTTCATAAATTGTTGGAATCGTTGGGAAGGAATAAGAATCAT
AAAAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACCAAGCGGT
ATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCA
AAGGAGCCGAAAGTGATTGTTCAATGCGAAGCTGTGGAACCTCGAACTTC
GTGCTGCAGAAAACAACGCGTTAGTTGGAGCAATCAGAAAGAGTTTGAAT
TTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAATT
GAAGAAGCGATTTTTGGTGAATTGAAAATTGATTTCGAATTTGATGACGA
AGAAACGAAGGAATCATATGAACAACACGTTCAGAATCTTGTAAAAGAAG
CAAAGCAACATTCTCCACACGCTCAAGTCAACGTCAAGCAACTTTTCCAA
GTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGCAAGAA
GGCTCTTTTTGGAAGACCATGGGTGTGTCTTCAATGCGTTTTTCCTCAGA
TCGAACTTTCGTTCAAAATATTGAAATGGTTTCTCGAAAAAATTGGCTTC
AAAAGTTTATTGACCAAAGAAATTGTAATCAGAAAAGTAATATCTGACAG
AAATATTGTATCTGTATAGCATTTGTGATCAATAATTTTATACCATTTTG
AATAGTATAACATGGCGAAGACCTGTTCCACGGGACGTTACGGTCTTTGT
GTCTTAAACATTAAGCTATTCAACTTACAGTAAACCAATCAATCTGCTAT
ACAGACCTGTTAGGAAAAATTTATTTACACTATAGCTCTTAAAACATCCA
TCCACGAAAGTTAGAATTTAGAAAATATACAAACTCTTTCAAAATCAGCC
TCTTGAAAACACTTTTCATAAAAGCCAGTAAGTTCGGTTGAAGCTGCG Coding sequence (CDS) from alignment at scaffold_307:84736..86683- >TCONS_00058155 ID=TCONS_00058155|Name=TCONS_00058155|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_307:84736..86683- (Clytia hemisphaerica) ATGGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTT ACCACAAGCGTACTACCTTGTCTCATTTTCGTGGTTTGCACTGTTACTTA TAAATTGGAGTTTCATAAATTGTTGGAATCGTTGGGAAGGAATAAGAATC ATAAAAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACCAAGCG GTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTAC CAAAGGAGCCGAAAGTGATTGTTCAATGCGAAGCTGTGGAACCTCGAACT TCGTGCTGCAGAAAACAACGCGTTAGTTGGAGCAATCAGAAAGAGTTTGA ATTTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAA TTGAAGAAGCGATTTTTGGTGAATTGAAAATTGATTTCGAATTTGATGAC GAAGAAACGAAGGAATCATATGAACAACACGTTCAGAATCTTGTAAAAGA AGCAAAGCAACATTCTCCACACGCTCAAGTCAACGTCAAGCAACTTTTCC AAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGCAAG AAGGCTCTTTTTGGAAGACCATGGGTGTGTCTTCAATGCGTTTTTCCTCA GATCGAACTTTCGTTCAAAATATTGAAATGGTTTCTCGAAAAAATTGGCT TCAAAAGTTTATTGACCAAAGAAATTGTAATCAGAAAAGTAATATCTGAC AGAAATATTGTATCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058155-exon-scaffold_307-1575043694:86507..86683 | TCONS_00058155-exon-scaffold_307-1575043694:86507..86683 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1575043694:86220..86257 | TCONS_00058155-exon-scaffold_307-1575043694:86220..86257 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1575043694:84736..85790 | TCONS_00058155-exon-scaffold_307-1575043694:84736..85790 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1510915933:86507..86683 | TCONS_00058155-exon-scaffold_307-1510915933:86507..86683 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1510915933:86220..86257 | TCONS_00058155-exon-scaffold_307-1510915933:86220..86257 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1510915933:84736..85790 | TCONS_00058155-exon-scaffold_307-1510915933:84736..85790 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1491911889:86507..86683 | TCONS_00058155-exon-scaffold_307-1491911889:86507..86683 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1491911889:86220..86257 | TCONS_00058155-exon-scaffold_307-1491911889:86220..86257 | Clytia hemisphaerica | exon |
TCONS_00058155-exon-scaffold_307-1491911889:84736..85790 | TCONS_00058155-exon-scaffold_307-1491911889:84736..85790 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_307 | supercontig | scaffold_307:84736..86683 - |
Blast
The following BLAST results are available for this feature:
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