TCONS_00058274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058274
Unique NameTCONS_00058274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=transcript|length=2287bp
TGAAATCAAGAGATGTGATTGGTCCAGTATGTCCTTTTAGTGATGATATT
AGATAAGGATGATTGATTCCGTTATCATTTAAGTTTTGCTGtactttctt
ttttgacacaggGTTTCTAAGCTTCTTTTGACTATTTGAAGTGTTTGGTT
CAGTTTTCTTGACTTCCTCTTTCTTGACTTCAGCTTGCggttcatcttct
tctttctttctgaATGTCAACAGGTATAAAGGAATGACAAAAAAGAGTAA
TCCAAGAGCAATTGCGACAAATATTGCTGCttcatccgccattttgtttg
ttttcgtgTTGCAATGACTAGCCTCTATCTGTATGATTCAGTGGATGATT
CACGCGcccattttaaagaatttgattggctgtgctgaatagaactttta
aaattaatcAATAAGAACTCTCAAATTTTGCGCTGAAAATAAGTCTTTTG
AAATTAACAGGCTAGTGTACCAAATACAAAATCCCGCCTCCGGCAAAATC
TTTCCTTTACAAAACAAAAGCTTCGAAGCTTCACGTTCACATCCACCAGC
AGTTTTAGGAAGAAAGATACCCTTCAAGTACAACAGTCATCATGGTTACC
CTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCACT
CGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATTG
GACCAAAATTTGAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCATC
AAAGTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGC
TGCCATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGG
TTGTTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCT
GCATGATTTTGAACTAAAAATTAGCTTCCTACTTCACCGACTAGTACCTA
TACTTTCAtaagatttttgttttgtatcataatttttattttactttacg
cttatttacaaattttgtatgATTCAATGTCTTTGCATAATTTTATTATG
GGATCTTCTAAATAACTTGCTACTTTCAtgtaaaatcgaaattttcgttt
caaaatcatatttattcATATACACTATTCACGTCTTTAAGTTTGAGCTC
GTTTTCAGTAATTTCTACTTTCAAAAGGTCAAAAGGTTTTGAAGTAAAGT
GCAGTTGAAATCCTTTCGATAACATTAAAATGAATTAACACCTTTTGATA
TTATATCAACCATATTATCCCGTACAATGGGTGTGCCACTGGTTAGGGtc
catgagtcccaggtagggtcgcaaaaacaccaaaataaaaagtcggtCCT
TCTCAAGGcacttttttgattgaatttggaaaaatttcggAATTTCAGTC
ACAAACGAGTCCCACTTCAGCGGCACAACCCCTTGATCGGCAAGGGTAGC
ACCCCCGGGCTTTTTTTCTTACTAGGCTAAAGAACTGAGGCTTTTCCTGT
GCTACCCTTTAACTTTTGATGGAATTGgcctttttgaatgaaattatcat
aataaaactttcgaaaaaaaattcaaaagtttcctTAGGCCTTCCAActc
ctagactagtaaaccacgtcgttgtatttcgctgcagattaaactttcaa
tgggatctattttttttaatgttttctgaATACAACTAGTCTgtctttcc
aatccactctcccgcggcaatttctattttttataagaactctttattat
aagcactattcccgcgttcctgtgtccaaggaaagacagacgcttgctag
tctatcCAACTCCTGAAAATGTCATTTtgctcaatgtgtgaaaaattcta
gatgttaaaaattaattttgaaacccaaaaatGGTTACTCTTAGGTTGGA
AATAAGCGGGTTCCCCGTTTGTTactttctcgaaaattttccaacccccc
acCCCGGATCTTATTAGGAttccccgtttattaattttcaagaatatttt
cagctgtcaaagagaaggccccttattttgctcctaaatatcctgatttt
agcctttatcatcaacatgaaaaataaaatatgagGAATATGTAATATGT
agttatcacacttttactcgtacaatataatataggatatatttttctcg
ttcagagttttctatatttgaaaatatgacgaaaaatctgaactcgaaaa
atatattgctattGTACTACTTAAATTTTCCAGGCAGAAATCTATATTTT
ATACAcggcaaatatgaaaaattctttaaggtcatca
Run BLAST on NCBI

protein sequence of TCONS_00058274-protein

>TCONS_00058274-protein ID=TCONS_00058274-protein|Name=TCONS_00058274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MVTLVKTKTEFDSTLSNNPLVAVDFTASWCGPCKMIGPKFEAMAAQFPSI
KFIKVDVDENSETSEALGIAAMPTFFFYANGEKMKEVVGASEDKLREALQ
ELSA
Run BLAST on NCBI

transcript from alignment at scaffold_309:247047..251930-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=transcript|length=4884bp|location=Sequence derived from alignment at scaffold_309:247047..251930- (Clytia hemisphaerica)
TGAAATCAAGAGATGTGATTGGTCCAGTATGTCCTTTTAGTGATGATATT AGATAAGGATGATTGATTCCGTTATCATTTAAGTTTTGCTGTACTTTCTT TTTTGACACAGGGTTTCTAAGCTTCTTTTGACTATTTGAAGTGTTTGGTT CAGTTTTCTTGACTTCCTCTTTCTTGACTTCAGCTTGCGGTTCATCTTCT TCTTTCTTTCTGAATGTCAACAGGTATAAAGGAATGACAAAAAAGAGTAA TCCAAGAGCAATTGCGACAAATATTGCTGCTTCATCCGCCATTTTGTTTG TTTTCGTGTTGCAATGACTAGCCTCTATCTGTATGATTCAGTGGATGATT CACGCGCCCATTTTAAAGAATTTGATTGGCTGTGCTGAATAGAACTTTTA AAATTAATCAATAAGAACTCTCAAATTTTGCGCTGAAAATAAGTCTTTTG AAATTAACAGGCTAGTGTACCAAATACAAAATCCCGCCTCCGGCAAAATC TTTCCTTTACAAAACAAAAGCTTCGAAGCTTCACGTTCACATCCACCAGC AGTTTTAGGAAGAAAGATACCCTTCAAGTACAACAGTCATCATGGTTACC CTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCACT CGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATTG GACCAAAATTTGAGGTAGAAATGTTTGATGATTTTTTAAGCTTTCTTCCA TTGCATTTTGACTCAAGAAATTTGGAAATGTTGTCGTTAGAATTGAGTGG AAAGTCAAATGACAGCCCATTCCTGTATGTTATCTACTCTTCACCTGCCA TATTCAGCATCATTCACTTTTTTCCCTATTTTTCAGATAGATGAGGGCAG ATTTATTATAAGATTTCTGGGGCAGTAGCTTAACAGAGAGGTAGTGTTGG TGCCTTCAGGGGCAGAAAGTGAAAGATTCAAAATTCTAAGTAGCGATATT GACTACTTGTTTTGCTACATTGTCCTGCATTATATTGTCTGCACGTCGCT TTTTACTACCTCGTGTCTGTTTGGTTCAGAACTAACAGACTTTTTGAAGT TCTGTAAAAAAGTTGAAAGTTCTAAATGATTTTACTGTTCTGTGAAAAAA TCATAACCATTAGTGAAATACTCATTCATCTATTTAAAATTGAAGACAAA AATTTGTGAAGAAAAACAATTGTGAGCACAAAAAATGCTTTTTTGAACAC TTGTTTCCAATGAAAAATAACTTTTATAGACTAAGCTTCCATCCTCAAAG ATTGAAGAAGCTTCTAATAATCAAAGTAAATGAGAGAAAATGAGAGAACC TCAAAATCAACCAGAATTTGCAACTTTTCTTCCAAAGCAAAAAGACCTGT TTTCTAGCGCCGCCATGATTTAATACACCTTTTAGGAGTGTCAACTGCGC ACGCGTCCAAACAATTTTCCATTGTTTTGATTTTAGCGACCGCTCTTTCC TGCGTAAAAACACGGTATGTAAAATTCCAGTTCTCGTTGTAAGGAAACTT AGCAGAGAAATGGTAGGTAAAGAACTCTATTTAATCATAACTTCTTTTCC TCTTGATGAATTTTTGTGGAATTTTCAGGAGAGATCCATAAAATTATCAT TGATATCATGTTCAAATATCTAAATCATTATCTTTAACCCTTTCAGTCCC AGAGTTTTCACAGTTACTTTCCCAGAGCTGTAAAATGAGTTTTTGAATGC ATTTACTCATGCTTCAATATCTCTGGAATCACTAAACCTAGGCCTCTCAA GTTTTCACCCTTTTTCACTTATAGTATGATGATTATTTTGATAGAAAAAA ATTTTCAAAATAACATCATCAGCGTGTCACGTGACCAGAGAAAGGCAAAA AAAAAATTGAAAAAAGCAATTTATTTGCCATTCAATGATAATTTTTTTTA TGAAAAAATGGTTTAAACCCATTCATTCCTCTGATAAATGTTTAGCATAA CAGTATCTACTAACTGAAAAAAGAATTAGCTCTAGTTTAGACAGCCCACT TTTTGCCCTGCCTATTCTAATTGCTAATTAAAGTGGGCATAAAGTGGGCT GTCTAAAGCCAATGCATAGCCCTCTTTTGACGTCAATGCAATGACTTCTT TCAATCATTTCCAAGCAATGATTTTAACTGCCAACTTTGTGCCCGCTTTC TGCCTACTCTAACAATTAGAATAGGCAGGGCAGAAAGTCGACCGTCTAAA CTAGAGCTTATTTGATTAGCCCACATAGAAAAATTATAATGATCGATAGA AGTTGTAAAAAATCCCTTTTTAGGCCTTACAGATTTTACTTGCAAAAATT TTTGTAAATACTTTTGTAAACAAAACTTTTTACTCAAACAAGCTTTTTTT ACGCGGTTTTTTGCACACGACGCAATATTTTATCTTCTTTGAAAGCTATT TCAAGACATCTCTTTATTTCCCGCCAAAACATCACAATTTGAAAAAGAAA GTAGGGACCGCTGTGCAGTCTTCTGGGAAAAAACAAAGCGTCCAAAGGGA CTGAAAGGGTAAAAGAAAAGAAAAATCGACAGTGTTAAAGTGCGCATTCC TACCTACCGTTTTCTGCCGTTTTCACGGTGTGGAACACGGTGGAGATAGC GAGACTCCTAAACGGTGTATTATGGAAAAATCTACCGAAAAATTTACTTT CAGATTACTCCATATAATATTGTACAAATTTTGATTCATTTCAGCGGAAT CCTGAGTTATGTCTTCTTAAAGTCATTTTCTTTAGACCAGGCCTCTCCCA CTCAAGACTCAATTGATTTACTCATTTCAGTGTACCTAACCGCTTAGATC ATTTTGGAGGAATGATGATACCGTGAGTGAGATCGGGTAACTTGTATCAG TTGAGGGAAACTTGCATAGCCCTCAAATGAATGACCTGGCTTGTCATCAA AATACAAAGTTAAATCAAAAAAAAAATGGTAGAGAGCTGCGAACAGAGCT GCGTAGTTTATTTGTTTTGAAATTTTGCTGCTTTGATTGGTTAGTCATTT GATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTTACCAGACTTCACGG TATTTGAGTGAAGCTTCGAAAGTGGAAGCTGAAAAAAAGGGAGCTAAAAC AGCTTTATCATTGACTTGTTCTGTCATTACACATTATTCATCATCATTAA GTTCGACAAAACATTACATTGAAAAACTTAGAACCCTGTAGAACCGTGTG TTAATATTACTAGATTAAAAGCAAAAGTAAAGTTATCTCAAAAATTGTTC TCTTTCTTTAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCATCAAA GTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGCTGC CATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGGTTG TTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCTGCA TGATTTTGAACTAAAAATTAGCTTCCTACTTCACCGACTAGTACCTATAC TTTCATAAGATTTTTGTTTTGTATCATAATTTTTATTTTACTTTACGCTT ATTTACAAATTTTGTATGATTCAATGTCTTTGCATAATTTTATTATGGGA TCTTCTAAATAACTTGCTACTTTCATGTAAAATCGAAATTTTCGTTTCAA AATCATATTTATTCATATACACTATTCACGTCTTTAAGTTTGAGCTCGTT TTCAGTAATTTCTACTTTCAAAAGGTCAAAAGGTTTTGAAGTAAAGTGCA GTTGAAATCCTTTCGATAACATTAAAATGAATTAACACCTTTTGATATTA TATCAACCATATTATCCCGTACAATGGGTGTGCCACTGGTTAGGGTCCAT GAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAAAAAGTCGGTCCTTCT CAAGGCACTTTTTTGATTGAATTTGGAAAAATTTCGGAATTTCAGTCACA AACGAGTCCCACTTCAGCGGCACAACCCCTTGATCGGCAAGGGTAGCACC CCCGGGCTTTTTTTCTTACTAGGCTAAAGAACTGAGGCTTTTCCTGTGCT ACCCTTTAACTTTTGATGGAATTGGCCTTTTTGAATGAAATTATCATAAT AAAACTTTCGAAAAAAAATTCAAAAGTTTCCTTAGGCCTTCCAACTCCTA GACTAGTAAACCACGTCGTTGTATTTCGCTGCAGATTAAACTTTCAATGG GATCTATTTTTTTTAATGTTTTCTGAATACAACTAGTCTGTCTTTCCAAT CCACTCTCCCGCGGCAATTTCTATTTTTTATAAGAACTCTTTATTATAAG CACTATTCCCGCGTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCT ATCCAACTCCTGAAAATGTCATTTTGCTCAATGTGTGAAAAATTCTAGAT GTTAAAAATTAATTTTGAAACCCAAAAATGGTTACTCTTAGGTTGGAAAT AAGCGGGTTCCCCGTTTGTTACTTTCTCGAAAATTTTCCAACCCCCCACC CCGGATCTTATTAGGATTCCCCGTTTATTAATTTTCAAGAATATTTTCAG CTGTCAAAGAGAAGGCCCCTTATTTTGCTCCTAAATATCCTGATTTTAGC CTTTATCATCAACATGAAAAATAAAATATGAGGAATATGTAATATGTAGT TATCACACTTTTACTCGTACAATATAATATAGGATATATTTTTCTCGTTC AGAGTTTTCTATATTTGAAAATATGACGAAAAATCTGAACTCGAAAAATA TATTGCTATTGTACTACTTAAATTTTCCAGGCAGAAATCTATATTTTATA CACGGCAAATATGAAAAATTCTTTAAGGTCATCA

Coding sequence (CDS) from alignment at scaffold_309:247047..251930-

>TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_309:247047..251930- (Clytia hemisphaerica)
GCTATGGCTGCTCAATTTCCATCCATCAAGTTCATCAAAGTCGATGTCGA
TGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGCTGCCATGCCAACCT
TCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGGTTGTTGGTGCCAGT
GAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCTGCATGAATGGTTAC
CCTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCAC
TCGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATT
GGACCAAAATTTGAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCAT
CAAAGTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAG
CTGCCATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAG
GTTGTTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTC
TGCATGAATGGTTACCCTTGTCAAAACCAAAACTGAGTTTGATAGCACTT
TGAGCAACAACCCACTCGTGGCTGTTGACTTCACTGCATCATGGTGTGGA
CCTTGCAAAATGATTGGACCAAAATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036709XLOC_036709Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058274-proteinTCONS_00058274-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058274-exon-scaffold_309-1575043694:251217..251930TCONS_00058274-exon-scaffold_309-1575043694:251217..251930Clytia hemisphaericaexon
TCONS_00058274-exon-scaffold_309-1575043694:247047..248619TCONS_00058274-exon-scaffold_309-1575043694:247047..248619Clytia hemisphaericaexon
TCONS_00058274-exon-scaffold_309-1510915933:251217..251930TCONS_00058274-exon-scaffold_309-1510915933:251217..251930Clytia hemisphaericaexon
TCONS_00058274-exon-scaffold_309-1510915933:247047..248619TCONS_00058274-exon-scaffold_309-1510915933:247047..248619Clytia hemisphaericaexon
TCONS_00058274-exon-scaffold_309-1491911889:251217..251930TCONS_00058274-exon-scaffold_309-1491911889:251217..251930Clytia hemisphaericaexon
TCONS_00058274-exon-scaffold_309-1491911889:247047..248619TCONS_00058274-exon-scaffold_309-1491911889:247047..248619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:247047..251930 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (166.554 tpm) - - (667.332 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
560.046 580.205 625.347 667.332 258.029 199.956 193.796 203.342 328.178 289.931 288.172 378.807 242.424 247.64 315.647 308 286.831 289.358 257.721 236.456 242.4 232.989 418.958 363.961 167.173 166.554 251.951 237.83 248.688 271.558
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0006662glycerol ether metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200SequenceTHIO
Match NameE-valueIdentityDescription
THIO3.990e-2139.42Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
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