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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058324 ID=TCONS_00058324|Name=TCONS_00058324|organism=Clytia hemisphaerica|type=transcript|length=2929bp
tttagatatttaaaatgccaaaaaataagggaaagaagaagaaaaataag
ggtcaaaataaacaaaaacccAACAAACAAAACAGTGAGGTTGTTGATCA
ATCAAACAGTCTTCAAGACAATGAAAACAAGGATATTGAACCTATCCCTG
AGATAAAAGTCGATGTTAATCTTGACGAAAACAAAGTTGTTGAGActtct
caaaatcaaaacaacgaACATAGTGGAGGAGATGAAATTCAAGTTGAAGT
TGTTCAAGTACAGGATGAATCAATAAATGAGGATAACAAAGACTCTTTTA
ACGAAGCTGATGCATCAACTACTGCACCAGTCAAAAAGAAACGTTTTTCC
TTTTTAAGGAAGAAAATGTCTGCTAGTTTACACAATGTCAATACATCATC
GAACGATATCAAGTTGAACGAGATGAGTGAGCCTCAGGAGAGAGGTGTCC
AACGTACCCAATCCATGAGTACCTTTGATAGAGAACCCAAAAGTAAGATT
CCACTTTACAAGTCGCGATCCatgaaaaagcaaaagaaaaacaatttgac
AGCTTCAACAAGCAACGTGGACTCTACCAGTCTGGTGCTTAACCCAGGGA
TGGATGATTGGAGAATGAGCGGTTTGTTAAACAACGTTGAACCCAAAGCT
GAAGAATCACCCAAAGCGTCGGCTTCTGTATCAATAACTCCTTCTCCAGT
GGTTGCACAATCCAAAGATGAGCAAAAAGAGGTAACTNTGCTTCTGTATC
AATAACTCCTCCTCCAGTGGACGCACAATCCAAAAATGAGCAAAAAGAGA
ATGAATCGATTGAACTACAACCAACGATCACAGTCGAAGAAACGAAAGAA
GAACCTGAAAGTGCACCTGATGAGGTTACTGTTCAAGTGGAAACACCGGC
TGAAGAACCTGTTGAGAACAACATTGAACAGAATTCTCCTGAAAAACCAA
CTGAGTCTACTGAAAGTGGGGCTGGTTCGAGCAGGGAAGAAATCATCGAT
TCTGAATCTACACCACAGCTAATAGATGCCACAACAGATGCGGAGCTTTA
CGAGttcgaaaatgaaaacaaagttgTGATGGTACAAAAACTTGAAGACG
TTTTGCGAGAAAAGAAAATGGTTCTACCTGAGGATATCATATCCAGTGAT
TGGCTGGTCCTCAATCTTGCTAACAGAGAGATTCCCACATTTTAGagata
ttatatttttaaacGAAACACATTATTACAATTGGAATGACAAACAGAAC
AGAACAGAACAGGGTAAATATTATTGGCACAcacattttttattaaattg
aaGCATTAAAATACCATTTTAAAATCTTATTCGCATCCTATAtggctttt
atttttttaatttataaccCCTTTCGATCAGTTTCAATTTATCTTCATAT
ATCATTTTNacttttattttttttatttataacccttttttgatttatct
tcatatatcatttcattttacaacatcacattttatttttactagTTCTA
GAACAGATAAGGAATGTGAACTTTCGTTCGGGAAAGGTTGAGttgtttaa
aggttttatttttataatattccataccaggacagtgtctacacctcttg
ttatattatgctgatataagcaaaaattgtttttcttttcctctttctaa
ccaatcttgctccacatccgtgtcaatccaatgtgaaaaagcttgtaaat
taaaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaacc
tttagaGATAATAAAACATAATCTTCTGAGACTCAGAACAGATTATCAGA
CAAATTATTTTCAGATTTCTGAGCTACAATCagtgtcataatatattggc
acttttggctaatttataattttcgaaaattgaagttcgagcgagaatgt
caatttttaggccttcaacttgatttcatcgagtatttcgatctgggagg
gatttattggtttctaggctatatttcaagccctactgggccatttttga
acttttggatcctcagatcctacaaatcgattgtggtttcaaaacacccc
ggtgaatttcccttttgtgccaagtattttgtccttgATTGTAGCTCTTT
CTTTGATAAACATTCACCTGTATATTCtggtttttaatattttggtctga
tTATCGACCAAGTTGTCTTGAATCGAGAACTATTAATCAGATGAGATGga
atttttacaagatactttgataattggtcattcgaagtaataaaaatgat
gcgttctttagaaaaagtaaaaaaaaaacaaatcaaataggagcttgtaa
aaactccatctcgtctcAATATAATCGATATACATAACACCGTCGATAAC
AACAAGAACCAGTAAATATTTGATGAGGATCTCCTGTTTATACTAATTGA
CACTTTGACTGACACTTTTCCACCTGAGTTATATTTGaggtttttataaa
attgttcttataagaaaagatTGCTACCTGATGAGGACTGTATGTATGCA
CCCTATATCATCATAACACACCACAGGATATTCGGAACCTATCGTTaata
tttaaaatgttttaaataattCAGAATCTTCGTTTAACCCTCGCAAAATA
AATCTCGTAACTCGAACAATTTCAAAAGCTCNTCTTCGTTTAACCCTCGT
AAAATAAATCTCGTAACTCGAACAATTTCAAAAGCTCTTCCTAAAATTGA
TTGCCTTGGTTTAAAAGTTAGCTTGAAAGCTACTAAAAGTGAGAGTAACT
GACCAGACGTTAAACGAATATGACGGACTGATGGTTCCTATGAAAAGGTC
TCTATATTCTTACCAtatgctttaaaaaaaataatgtttgtgctgtacat
tttttattttttttctcatttttattgaCGATTTTATTTACTTACGTAAG
AATGCATAGATTAATATCCAAATTAAAGA Run BLAST on NCBI transcript from alignment at scaffold_309:894328..898730- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058324 ID=TCONS_00058324|Name=TCONS_00058324|organism=Clytia hemisphaerica|type=transcript|length=4403bp|location=Sequence derived from alignment at scaffold_309:894328..898730- (Clytia hemisphaerica)
TTTAGATATTTAAAATGCCAAAAAATAAGGGAAAGAAGAAGAAAAATAAG
GGTCAAAATAAACAAAAACCCAACAAACAAAACAGTGAGGTTGTTGATCA
ATCAAACAGTCTTCAAGACAATGAAAACAAGGATATTGAACCTATCCCTG
AGATAAAAGTCGATGTTAATCTTGACGAAAACAAAGTTGTTGAGACTTCT
CAAAATCAAAACAACGAACATAGTGGAGGAGATGAAATTCAAGTTGAAGT
TGTTCAAGTACAGGATGAATCAATAAATGAGGATAACAAAGACTCTTTTA
ACGAAGCTGATGCATCAACTACTGCACCAGTCAAAAAGAAACGTTTTTCC
TTTTTAAGGAAGAAAATGTCTGCTAGTTTACACAATGTCAATACATCATC
GAACGATATCAAGTTGAACGAGATGAGTGAGCCTCAGGAGAGAGGTGTCC
AACGTACCCAATCCATGAGTACCTTTGATAGAGAACCCAAAAGTAAGATT
CCACTTTACAAGTCGCGATCCATGAAAAAGCAAAAGAAAAACAATTTGAC
AGCTTCAACAAGCAACGTGGACTCTACCAGTCTGGTGCTTAACCCAGGGA
TGGATGATTGGAGAATGAGCGGTTTGTTAAACAACGTTGAACCCAAAGCT
GAAGAATCACCCAAAGCGTCGGCTTCTGTATCAATAACTCCTTCTCCAGT
GGTTGCACAATCCAAAGATGAGCAAAAAGAGGTAACTNTGCTTCTGTATC
AATAACTCCTCCTCCAGTGGACGCACAATCCAAAAATGAGCAAAAAGAGG
TAACTGCATATACTTATTTTCCGTTGACTTCTACTTGAATCTGGTACTGT
AGTTCACTAATCAAGGGAGACTTGAAAAGTAATGGAGAAATAATAACTGC
TTGCGTATATCTCAAAAAAATTATCCTTTGACTTTCCTGATTTTCCAGTA
TGCTAGGATCTTTCATCTCTTCCAGAAGGTCTCTTGGAAATCTCCATAAA
TAAGTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTATTATTTATACTAGTAATTTATAATGA
TAATGCAAATTAAAATTTTATTGTTTGATGTTTGTCACCTGATTTACTGA
AATTTTACAGACCAGAATCTATTAGAGGGTTTCGTTTTATGCTTACTAAC
GAAATTAGCTTATCTTTAATAATTTATCATTATTGGAAAGTGCTATGAAC
TTATTTTACTTTTTTCTCACACTATTGTTGCCATATTTTCCTATTTTCTA
ATAGACCTTTTCATAAATTATAACCAAGGTGATTAACTCCATGTGGATTT
TATTGAAACTACTTTCTATCCATAAAAAAATTATTTAATGTCTCAAGGGA
CATATTCACCATGGTAATTGTTTGAATATGAGGCAAGTGATGTTCATGAT
GTAATCTCATGGTTGATTGAAATTCGATTGACGTTTTTGCTTACGTTAAT
TTGTAATTTCCCGCGAACTTGTAATTTCCCTCCTAGATTTTGTAATTTCC
CGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCATGAATAGATAAACTGATTTTAAACAGGT
ATATTTGTTTGTCTCATTTTTAGAATGAATCGATTGAACTACAACCAACG
ATCACAGTCGAAGAAACGAAAGAAGAACCTGAAAGTGCACCTGATGAGGT
TACTGTTCAAGTGGAAACACCGGCTGAAGAACCTGTTGAGAACAACATTG
AACAGAATTCTCCTGAAAAACCAACTGAGTCTACTGAAAGTGGGGCTGGT
TCGAGCAGGGAAGAAATCATCGATTCTGAATCTACACCACAGCTAATAGA
TGCCACAACAGATGCGGAGCTTTACGAGTTCGAAAATGAAAACAAAGTTG
TGATGGTACAAAAACTTGAAGACGTTTTGCGAGAAAAGAAAATGGTTCTA
CCTGAGGATATCATATCCAGTGATTGGCTGGTCCTCAATCTTGCTAACAG
AGAGATTCCCACATTTTAGAGATATTATATTTTTAAACGAAACACATTAT
TACAATTGGAATGACAAACAGAACAGAACAGAACAGGGTAAATATTATTG
GCACACACATTTTTTATTAAATTGAAGCATTAAAATACCATTTTAAAATC
TTATTCGCATCCTATATGGCTTTTATTTTTTTAATTTATAACCCCTTTCG
ATCAGTTTCAATTTATCTTCATATATCATTTTNACTTTTATTTTTTTTAT
TTATAACCCTTTTTTGATTTATCTTCATATATCATTTCATTTTACAACAT
CACATTTTATTTTTACTAGTTCTAGAACAGATAAGGAATGTGAACTTTCG
TTCGGGAAAGGTTGAGTTGTTTAAAGGTTTTATTTTTATAATATTCCATA
CCAGGACAGTGTCTACACCTCTTGTTATATTATGCTGATATAAGCAAAAA
TTGTTTTTCTTTTCCTCTTTCTAACCAATCTTGCTCCACATCCGTGTCAA
TCCAATGTGAAAAAGCTTGTAAATTAAAATTGATGAGTAAGCAAACGATA
TCACTCTTATTTAAAAACAAAACCTTTAGAGATAATAAAACATAATCTTC
TGAGACTCAGAACAGATTATCAGACAAATTATTTTCAGATTTCTGAGCTA
CAATCAGTGTCATAATATATTGGCACTTTTGGCTAATTTATAATTTTCGA
AAATTGAAGTTCGAGCGAGAATGTCAATTTTTAGGCCTTCAACTTGATTT
CATCGAGTATTTCGATCTGGGAGGGATTTATTGGTTTCTAGGCTATATTT
CAAGCCCTACTGGGCCATTTTTGAACTTTTGGATCCTCAGATCCTACAAA
TCGATTGTGGTTTCAAAACACCCCGGTGAATTTCCCTTTTGTGCCAAGTA
TTTTGTCCTTGATTGTAGCTCTTTCTTTGATAAACATTCACCTGTATATT
CTGGTTTTTAATATTTTGGTCTGATTATCGACCAAGTTGTCTTGAATCGA
GAACTATTAATCAGATGAGATGGAATTTTTACAAGATACTTTGATAATTG
GTCATTCGAAGTAATAAAAATGATGCGTTCTTTAGAAAAAGTAAAAAAAA
AACAAATCAAATAGGAGCTTGTAAAAACTCCATCTCGTCTCAATATAATC
GATATACATAACACCGTCGATAACAACAAGAACCAGTAAATATTTGATGA
GGATCTCCTGTTTATACTAATTGACACTTTGACTGACACTTTTCCACCTG
AGTTATATTTGAGGTTTTTATAAAATTGTTCTTATAAGAAAAGATTGCTA
CCTGATGAGGACTGTATGTATGCACCCTATATCATCATAACACACCACAG
GATATTCGGAACCTATCGTTAATATTTAAAATGTTTTAAATAATTCAGAA
TCTTCGTTTAACCCTCGCAAAATAAATCTCGTAACTCGAACAATTTCAAA
AGCTCNTCTTCGTTTAACCCTCGTAAAATAAATCTCGTAACTCGAACAAT
TTCAAAAGCTCTTCCTAAAATTGATTGCCTTGGTTTAAAAGTTAGCTTGA
AAGCTACTAAAAGTGAGAGTAACTGACCAGACGTTAAACGAATATGACGG
ACTGATGGTTCCTATGAAAAGGTCTCTATATTCTTACCATATGCTTTAAA
AAAAATAATGTTTGTGCTGTACATTTTTTATTTTTTTTCTCATTTTTATT
GACGATTTTATTTACTTACGTAAGAATGCATAGATTAATATCCAAATTAA
AGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058324-exon-scaffold_309-1575043694:897932..898730 | TCONS_00058324-exon-scaffold_309-1575043694:897932..898730 | Clytia hemisphaerica | exon |
| TCONS_00058324-exon-scaffold_309-1575043694:894328..896457 | TCONS_00058324-exon-scaffold_309-1575043694:894328..896457 | Clytia hemisphaerica | exon |
| TCONS_00058324-exon-scaffold_309-1510915933:897932..898730 | TCONS_00058324-exon-scaffold_309-1510915933:897932..898730 | Clytia hemisphaerica | exon |
| TCONS_00058324-exon-scaffold_309-1510915933:894328..896457 | TCONS_00058324-exon-scaffold_309-1510915933:894328..896457 | Clytia hemisphaerica | exon |
| TCONS_00058324-exon-scaffold_309-1491911889:897932..898730 | TCONS_00058324-exon-scaffold_309-1491911889:897932..898730 | Clytia hemisphaerica | exon |
| TCONS_00058324-exon-scaffold_309-1491911889:894328..896457 | TCONS_00058324-exon-scaffold_309-1491911889:894328..896457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:894328..898730 - |
Blast
The following BLAST results are available for this feature:
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