Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058325 ID=TCONS_00058325|Name=TCONS_00058325|organism=Clytia hemisphaerica|type=transcript|length=2993bp GTTAAGACATTTAACTTTCAGGAAAAAGAGTTAGAATATACACCCTGATA GAGTTAGAATCATTGACGAATCTGGTTGACTCCTCCAGCAGTGCTCAATT TTTAGTGCGCacattaaatttcattttctttttttagatatttaaaatgc caaaaaataagggaaagaagaagaaaaataagggtcaaaataaacaaaaa cccAACAAACAAAACAGTGAGGTTGTTGATCAATCAAACAGTCTTCAAGA CAATGAAAACAAGGATATTGAACCTATCCCTGAGATAAAAGTCGATGTTA ATCTTGACGAAAACAAAGTTGTTGAGActtctcaaaatcaaaacaacgaA CATAGTGGAGGAGATGAAATTCAAGTTGAAGTTGTTCAAGTACAGGATGA ATCAATAAATGAGGATAACAAAGACTCTTTTAACGAAGCTGATGCATCAA CTACTGCACCAGTCAAAAAGAAACGTTTTTCCTTTTTAAGGAAGAAAATG TCTGCTAGTTTACACAATGTCAATACATCATCGAACGATATCAAGTTGAA CGAGATGAGTGAGCCTCAGGAGAGAGGTGTCCAACGTACCCAATCCATGA GTACCTTTGATAGAGAACCCAAAAGTAAGATTCCACTTTACAAGTCGCGA TCCatgaaaaagcaaaagaaaaacaatttgacAGCTTCAACAAGCAACGT GGACTCTACCAGTCTGGTGCTTAACCCAGGGATGGATGATTGGAGAATGA GCGGTTTGTTAAACAACGTTGAACCCAAAGCTGAAGAATCACCCAAAGCG TCGGCTTCTGTATCAATAACTCCTTCTCCAGTGGTTGCACAATCCAAAGA TGAGCAAAAAGAGAATGAATCGATTGAACTACAACCAACGATCACAGTCG AAGAAACGAAAGAAGAACCTGAAAGTGCACCTGATGAGGTTACTGTTCAA GTGGAAACACCGGCTGAAGAACCTGTTGAGAACAACATTGAACAGAATTC TCCTGAAAAACCAACTGAGTCTACTGAAAGTGGGGCTGGTTCGAGCAGGG AAGAAATCATCGATTCTGAATCTACACCACAGCTAATAGATGCCACAACA GATGCGGAGCTTTACGAGttcgaaaatgaaaacaaagttgTGATGGTACA AAAACTTGAAGACGTTTTGCGAGAAAAGAAAATGGTTCTACCTGAGGATA TCATATCCAGTGATTGGCTGGTCCTCAATCTTGCTAACAGAGAGATTCCC ACATTTTAGagatattatatttttaaacGAAACACATTATTACAATTGGA ATGACAAACAGAACAGAACAGAACAGGGTAAATATTATTGGCACAcacat tttttattaaattgaaGCATTAAAATACCATTTTAAAATCTTATTCGCAT CCTATAtggcttttatttttttaatttataaccCCTTTCGATCAGTTTCA ATTTATCTTCATATATCATTTTNacttttattttttttatttataaccct tttttgatttatcttcatatatcatttcattttacaacatcacattttat ttttactagTTCTAGAACAGATAAGGAATGTGAACTTTCGTTCGGGAAAG GTTGAGttgtttaaaggttttatttttataatattccataccaggacagt gtctacacctcttgttatattatgctgatataagcaaaaattgtttttct tttcctctttctaaccaatcttgctccacatccgtgtcaatccaatgtga aaaagcttgtaaattaaaattgatgagtaagcaaacgatatcactcttat ttaaaaacaaaacctttagaGATAATAAAACATAATCTTCTGAGACTCAG AACAGATTATCAGACAAATTATTTTCAGATTTCTGAGCTACAATCagtgt cataatatattggcacttttggctaatttataattttcgaaaattgaagt tcgagcgagaatgtcaatttttaggccttcaacttgatttcatcgagtat ttcgatctgggagggatttattggtttctaggctatatttcaagccctac tgggccatttttgaacttttggatcctcagatcctacaaatcgattgtgg tttcaaaacaccccggtgaatttcccttttgtgccaagtattttgtcctt gATTGTAGCTCTTTCTTTGATAAACATTCACCTGTATATTCtggttttta atattttggtctgatTATCGACCAAGTTGTCTTGAATCGAGAACTATTAA TCAGATGAGATGgaatttttacaagatactttgataattggtcattcgaa gtaataaaaatgatgcgttctttagaaaaagtaaaaaaaaaacaaatcaa ataggagcttgtaaaaactccatctcgtctcAATATAATCGATATACATA ACACCGTCGATAACAACAAGAACCAGTAAATATTTGATGAGGATCTCCTG TTTATACTAATTGACACTTTGACTGACACTTTTCCACCTGAGTTATATTT GaggtttttataaaattgttcttataagaaaagatTGCTACCTGATGAGG ACTGTATGTATGCACCCTATATCATCATAACACACCACAGGATATTCGGA ACCTATCGTTaatatttaaaatgttttaaataattCAGAATCTTCGTTTA ACCCTCGCAAAATAAATCTCGTAACTCGAACAATTTCAAAAGCTCNTCTT CGTTTAACCCTCGTAAAATAAATCTCGTAACTCGAACAATTTCAAAAGCT CTTCCTAAAATTGATTGCCTTGGTTTAAAAGTTAGCTTGAAAGCTACTAA AAGTGAGAGTAACTGACCAGACGTTAAACGAATATGACGGACTGATGGTT CCTATGAAAAGGTCTCTATATTCTTACCAtatgctttaaaaaaaataatg tttgtgctgtacattttttattttttttctcatttttattgaCGATTTTA TTTACTTACGTAAGAATGCATAGATTAATATCCAAATTAAAGA Run BLAST on NCBI protein sequence of TCONS_00058325-protein >TCONS_00058325-protein ID=TCONS_00058325-protein|Name=TCONS_00058325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MPKNKGKKKKNKGQNKQKPNKQNSEVVDQSNSLQDNENKDIEPIPEIKVD VNLDENKVVETSQNQNNEHSGGDEIQVEVVQVQDESINEDNKDSFNEADA STTAPVKKKRFSFLRKKMSASLHNVNTSSNDIKLNEMSEPQERGVQRTQS MSTFDREPKSKIPLYKSRSMKKQKKNNLTASTSNVDSTSLVLNPGMDDWR MSGLLNNVEPKAEESPKASASVSITPSPVVAQSKDEQKENESIELQPTIT VEETKEEPESAPDEVTVQVETPAEEPVENNIEQNSPEKPTESTESGAGSS REEIIDSESTPQLIDATTDAELYEFENENKVVMVQKLEDVLREKKMVLPE DIISSDWLVLNLANREIPTF Run BLAST on NCBI transcript from alignment at scaffold_309:894328..898862- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058325 ID=TCONS_00058325|Name=TCONS_00058325|organism=Clytia hemisphaerica|type=transcript|length=4535bp|location=Sequence derived from alignment at scaffold_309:894328..898862- (Clytia hemisphaerica) GTTAAGACATTTAACTTTCAGGAAAAAGAGTTAGAATATACACCCTGATA
GAGTTAGAATCATTGACGAATCTGGTTGACTCCTCCAGCAGTGCTCAATT
TTTAGTGCGCACATTAAATTTCATTTTCTTTTTTTAGATATTTAAAATGC
CAAAAAATAAGGGAAAGAAGAAGAAAAATAAGGGTCAAAATAAACAAAAA
CCCAACAAACAAAACAGTGAGGTTGTTGATCAATCAAACAGTCTTCAAGA
CAATGAAAACAAGGATATTGAACCTATCCCTGAGATAAAAGTCGATGTTA
ATCTTGACGAAAACAAAGTTGTTGAGACTTCTCAAAATCAAAACAACGAA
CATAGTGGAGGAGATGAAATTCAAGTTGAAGTTGTTCAAGTACAGGATGA
ATCAATAAATGAGGATAACAAAGACTCTTTTAACGAAGCTGATGCATCAA
CTACTGCACCAGTCAAAAAGAAACGTTTTTCCTTTTTAAGGAAGAAAATG
TCTGCTAGTTTACACAATGTCAATACATCATCGAACGATATCAAGTTGAA
CGAGATGAGTGAGCCTCAGGAGAGAGGTGTCCAACGTACCCAATCCATGA
GTACCTTTGATAGAGAACCCAAAAGTAAGATTCCACTTTACAAGTCGCGA
TCCATGAAAAAGCAAAAGAAAAACAATTTGACAGCTTCAACAAGCAACGT
GGACTCTACCAGTCTGGTGCTTAACCCAGGGATGGATGATTGGAGAATGA
GCGGTTTGTTAAACAACGTTGAACCCAAAGCTGAAGAATCACCCAAAGCG
TCGGCTTCTGTATCAATAACTCCTTCTCCAGTGGTTGCACAATCCAAAGA
TGAGCAAAAAGAGGTAACTNTGCTTCTGTATCAATAACTCCTCCTCCAGT
GGACGCACAATCCAAAAATGAGCAAAAAGAGGTAACTGCATATACTTATT
TTCCGTTGACTTCTACTTGAATCTGGTACTGTAGTTCACTAATCAAGGGA
GACTTGAAAAGTAATGGAGAAATAATAACTGCTTGCGTATATCTCAAAAA
AATTATCCTTTGACTTTCCTGATTTTCCAGTATGCTAGGATCTTTCATCT
CTTCCAGAAGGTCTCTTGGAAATCTCCATAAATAAGTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTATTATTTATACTAGTAATTTATAATGATAATGCAAATTAAAATTT
TATTGTTTGATGTTTGTCACCTGATTTACTGAAATTTTACAGACCAGAAT
CTATTAGAGGGTTTCGTTTTATGCTTACTAACGAAATTAGCTTATCTTTA
ATAATTTATCATTATTGGAAAGTGCTATGAACTTATTTTACTTTTTTCTC
ACACTATTGTTGCCATATTTTCCTATTTTCTAATAGACCTTTTCATAAAT
TATAACCAAGGTGATTAACTCCATGTGGATTTTATTGAAACTACTTTCTA
TCCATAAAAAAATTATTTAATGTCTCAAGGGACATATTCACCATGGTAAT
TGTTTGAATATGAGGCAAGTGATGTTCATGATGTAATCTCATGGTTGATT
GAAATTCGATTGACGTTTTTGCTTACGTTAATTTGTAATTTCCCGCGAAC
TTGTAATTTCCCTCCTAGATTTTGTAATTTCCCGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTCATGAATAGATAAACTGATTTTAAACAGGTATATTTGTTTGTCTCATT
TTTAGAATGAATCGATTGAACTACAACCAACGATCACAGTCGAAGAAACG
AAAGAAGAACCTGAAAGTGCACCTGATGAGGTTACTGTTCAAGTGGAAAC
ACCGGCTGAAGAACCTGTTGAGAACAACATTGAACAGAATTCTCCTGAAA
AACCAACTGAGTCTACTGAAAGTGGGGCTGGTTCGAGCAGGGAAGAAATC
ATCGATTCTGAATCTACACCACAGCTAATAGATGCCACAACAGATGCGGA
GCTTTACGAGTTCGAAAATGAAAACAAAGTTGTGATGGTACAAAAACTTG
AAGACGTTTTGCGAGAAAAGAAAATGGTTCTACCTGAGGATATCATATCC
AGTGATTGGCTGGTCCTCAATCTTGCTAACAGAGAGATTCCCACATTTTA
GAGATATTATATTTTTAAACGAAACACATTATTACAATTGGAATGACAAA
CAGAACAGAACAGAACAGGGTAAATATTATTGGCACACACATTTTTTATT
AAATTGAAGCATTAAAATACCATTTTAAAATCTTATTCGCATCCTATATG
GCTTTTATTTTTTTAATTTATAACCCCTTTCGATCAGTTTCAATTTATCT
TCATATATCATTTTNACTTTTATTTTTTTTATTTATAACCCTTTTTTGAT
TTATCTTCATATATCATTTCATTTTACAACATCACATTTTATTTTTACTA
GTTCTAGAACAGATAAGGAATGTGAACTTTCGTTCGGGAAAGGTTGAGTT
GTTTAAAGGTTTTATTTTTATAATATTCCATACCAGGACAGTGTCTACAC
CTCTTGTTATATTATGCTGATATAAGCAAAAATTGTTTTTCTTTTCCTCT
TTCTAACCAATCTTGCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTT
GTAAATTAAAATTGATGAGTAAGCAAACGATATCACTCTTATTTAAAAAC
AAAACCTTTAGAGATAATAAAACATAATCTTCTGAGACTCAGAACAGATT
ATCAGACAAATTATTTTCAGATTTCTGAGCTACAATCAGTGTCATAATAT
ATTGGCACTTTTGGCTAATTTATAATTTTCGAAAATTGAAGTTCGAGCGA
GAATGTCAATTTTTAGGCCTTCAACTTGATTTCATCGAGTATTTCGATCT
GGGAGGGATTTATTGGTTTCTAGGCTATATTTCAAGCCCTACTGGGCCAT
TTTTGAACTTTTGGATCCTCAGATCCTACAAATCGATTGTGGTTTCAAAA
CACCCCGGTGAATTTCCCTTTTGTGCCAAGTATTTTGTCCTTGATTGTAG
CTCTTTCTTTGATAAACATTCACCTGTATATTCTGGTTTTTAATATTTTG
GTCTGATTATCGACCAAGTTGTCTTGAATCGAGAACTATTAATCAGATGA
GATGGAATTTTTACAAGATACTTTGATAATTGGTCATTCGAAGTAATAAA
AATGATGCGTTCTTTAGAAAAAGTAAAAAAAAAACAAATCAAATAGGAGC
TTGTAAAAACTCCATCTCGTCTCAATATAATCGATATACATAACACCGTC
GATAACAACAAGAACCAGTAAATATTTGATGAGGATCTCCTGTTTATACT
AATTGACACTTTGACTGACACTTTTCCACCTGAGTTATATTTGAGGTTTT
TATAAAATTGTTCTTATAAGAAAAGATTGCTACCTGATGAGGACTGTATG
TATGCACCCTATATCATCATAACACACCACAGGATATTCGGAACCTATCG
TTAATATTTAAAATGTTTTAAATAATTCAGAATCTTCGTTTAACCCTCGC
AAAATAAATCTCGTAACTCGAACAATTTCAAAAGCTCNTCTTCGTTTAAC
CCTCGTAAAATAAATCTCGTAACTCGAACAATTTCAAAAGCTCTTCCTAA
AATTGATTGCCTTGGTTTAAAAGTTAGCTTGAAAGCTACTAAAAGTGAGA
GTAACTGACCAGACGTTAAACGAATATGACGGACTGATGGTTCCTATGAA
AAGGTCTCTATATTCTTACCATATGCTTTAAAAAAAATAATGTTTGTGCT
GTACATTTTTTATTTTTTTTCTCATTTTTATTGACGATTTTATTTACTTA
CGTAAGAATGCATAGATTAATATCCAAATTAAAGA Coding sequence (CDS) from alignment at scaffold_309:894328..898862- >TCONS_00058325 ID=TCONS_00058325|Name=TCONS_00058325|organism=Clytia hemisphaerica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_309:894328..898862- (Clytia hemisphaerica) AATGAATCGATTGAACTACAACCAACGATCACAGTCGAAGAAACGAAAGA AGAACCTGAAAGTGCACCTGATGAGGTTACTGTTCAAGTGGAAACACCGG CTGAAGAACCTGTTGAGAACAACATTGAACAGAATTCTCCTGAAAAACCA ACTGAGTCTACTGAAAGTGGGGCTGGTTCGAGCAGGGAAGAAATCATCGA TTCTGAATCTACACCACAGCTAATAGATGCCACAACAGATGCGGAGCTTT ACGAGTTCGAAAATGAAAACAAAGTTGTGATGGTACAAAAACTTGAAGAC GTTTTGCGAGAAAAGAAAATGGTTCTACCTGAGGATATCATATCCAGTGA TTGGCTGGTCCTCAATCTTGCTAACAGAGAGATTCCCACATTTTAGATGC CAAAAAATAAGGGAAAGAAGAAGAAAAATAAGGGTCAAAATAAACAAAAA CCCAACAAACAAAACAGTGAGGTTGTTGATCAATCAAACAGTCTTCAAGA CAATGAAAACAAGGATATTGAACCTATCCCTGAGATAAAAGTCGATGTTA ATCTTGACGAAAACAAAGTTGTTGAGACTTCTCAAAATCAAAACAACGAA CATAGTGGAGGAGATGAAATTCAAGTTGAAGTTGTTCAAGTACAGGATGA ATCAATAAATGAGGATAACAAAGACTCTTTTAACGAAGCTGATGCATCAA CTACTGCACCAGTCAAAAAGAAACGTTTTTCCTTTTTAAGGAAGAAAATG TCTGCTAGTTTACACAATGTCAATACATCATCGAACGATATCAAGTTGAA CGAGATGAGTGAGCCTCAGGAGAGAGGTGTCCAACGTACCCAATCCATGA GTACCTTTGATAGAGAACCCAAAAGTAAGATTCCACTTTACAAGTCGCGA TCCATGAAAAAGCAAAAGAAAAACAATTTGACAGCTTCAACAAGCAACGT GGACTCTACCAGTCTGGTGCTTAACCCAGGGATGGATGATTGGAGAATGA GCGGTTTGTTAAACAACGTTGAACCCAAAGCTGAAGAATCACCCAAAGCG TCGGCTTCTGTATCAATAACTCCTTCTCCAGTGGTTGCACAATCCAAAGA TGAGCAAAAAGAGAATGAATCGATTGAACTACAACCAACGATCACAGTCG AAGAAACGAAAGAAGAACCTGAAAGTGCACCTGATGAGGTTACTGTTCAA GTGGAAACACCGGCTGAAGAACCTGTTGAGAACAACATTGAACAGAATTC TCCTGAAAAACCAACTGAGTCTACTGAAAGTGGGGCTGGTTCGAGCAGGG AAGAAATCATCGATTCTGAATCTACACCACAGCTAATAGATGCCACAACA GATGCGGAGCTTTACGAGTTCGAAAATGAAAACAAAGTTGTGATGGTACA AAAACTTGAAGACGTTTTGCGAGAAAAGAAAATGGTTCTACCTGAGGATA TCATATCCAGTGATTGGCTGGTCCTCAATCTTGCTAACAGAGAGATTCCC ACATTTTAGATGCCAAAAAATAAGGGAAAGAAGAAGAAAAATAAGGGTCA AAATAAACAAAAACCCAACAAACAAAACAGTGAGGTTGTTGATCAATCAA ACAGTCTTCAAGACAATGAAAACAAGGATATTGAACCTATCCCTGAGATA AAAGTCGATGTTAATCTTGACGAAAACAAAGTTGTTGAGACTTCTCAAAA TCAAAACAACGAACATAGTGGAGGAGATGAAATTCAAGTTGAAGTTGTTC AAGTACAGGATGAATCAATAAATGAGGATAACAAAGACTCTTTTAACGAA GCTGATGCATCAACTACTGCACCAGTCAAAAAGAAACGTTTTTCCTTTTT AAGGAAGAAAATGTCTGCTAGTTTACACAATGTCAATACATCATCGAACG ATATCAAGTTGAACGAGATGAGTGAGCCTCAGGAGAGAGGTGTCCAACGT ACCCAATCCATGAGTACCTTTGATAGAGAACCCAAAAGTAAGATTCCACT TTACAAGTCGCGATCCATGAAAAAGCAAAAGAAAAACAATTTGACAGCTT CAACAAGCAACGTGGACTCTACCAGTCTGGTGCTTAACCCAGGGATGGAT GATTGGAGAATGAGCGGTTTGTTAAACAACGTTGAACCCAAAGCTGAAGA ATCACCCAAAGCGTCGGCTTCTGTATCAATAACTCCTTCTCCAGTGGTTG CACAATCCAAAGATGAGCAAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058325-exon-scaffold_309-1575043694:898000..898862 | TCONS_00058325-exon-scaffold_309-1575043694:898000..898862 | Clytia hemisphaerica | exon |
TCONS_00058325-exon-scaffold_309-1575043694:894328..896457 | TCONS_00058325-exon-scaffold_309-1575043694:894328..896457 | Clytia hemisphaerica | exon |
TCONS_00058325-exon-scaffold_309-1510915933:898000..898862 | TCONS_00058325-exon-scaffold_309-1510915933:898000..898862 | Clytia hemisphaerica | exon |
TCONS_00058325-exon-scaffold_309-1510915933:894328..896457 | TCONS_00058325-exon-scaffold_309-1510915933:894328..896457 | Clytia hemisphaerica | exon |
TCONS_00058325-exon-scaffold_309-1491911889:898000..898862 | TCONS_00058325-exon-scaffold_309-1491911889:898000..898862 | Clytia hemisphaerica | exon |
TCONS_00058325-exon-scaffold_309-1491911889:894328..896457 | TCONS_00058325-exon-scaffold_309-1491911889:894328..896457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_309 | supercontig | scaffold_309:894328..898862 - |
Blast
The following BLAST results are available for this feature:
|