TCONS_00058588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058588
Unique NameTCONS_00058588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=transcript|length=1000bp
CTAGAatataaatattgaaataaataaaGACATAACATAAACTGATAGCC
CTGCTGAATTTTGACTGGACTTTTTGGACTTTCCTTTCTGCCAACCGATT
TGATTTTACGATACCGATACCCCTGCTGAATTTTGACTGGACTTTGGACT
TTTCTTTCTGCCAACCGATTTGATTTTACGATACCTATACCCCTGCTGAA
TTTTGACTGGACTTTGGACTTTTCTTTCTGCCAACCGATTTGATTTTACG
ATACCGATACCCCTGCTGAAATTTGACTGGACTTTAGACTTTCCTTTCTG
CCAACCGATTTGATTTTACGATACCGATACCACTGCTGAATTTTGACTGG
ACTTTAGACTTTCCTTTCTGCCAACCAATTTGATTTTACGATACCGATAC
CCCTGCTGATTTTGTTTATTGAGTTAATGTTATTGAGTCATGGAAGGTCA
TATTAAAAACCTAAAACTAATCTGCAGAATGTGTGGTTTGAAAAGTCATC
AAAAAGATTACAAAAACCCCAAATCAGTTATGGAGTATTCTGCCATTATT
AAACAGGTTTTTAAATTGAATGTCACCGAGGAAAAtgaatcaattttttc
aaaagtgttaTGCAAACGTTGTCACATGAAGTTATACcgcttaaaaaata
aaaatttagacaTTCCACCCGATGAACTTACATCACATGGTGACAGTTTT
TTTGAGTTCAGACCACACAGTGAAGAATGTTATGTATGCACTTTAGCTTC
AAAGCGAGGACCAGGAATCAAGAGACCAAAACTGTTCAATCTCAAAGAGG
AGATAAAACATCTAAAAGGATATACTACACTTGAGATTGAAAATGAGATG
CATATTACCGATATTGATCGTCTAGGAAAGGCTATTTGTATTAAAACCCT
CATTATTGATGTTAATGAGAAAACCTGGAAATTTCATGCACTAAATCGTT
ATGTATCATCTCCTTTTTTGATAGATGATGTTTTGCTACCTTCAACGATC
Run BLAST on NCBI

protein sequence of TCONS_00058588-protein

>TCONS_00058588-protein ID=TCONS_00058588-protein|Name=TCONS_00058588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MEGHIKNLKLICRMCGLKSHQKDYKNPKSVMEYSAIIKQVFKLNVTEENE
SIFSKVLCKRCHMKLYRLKNKNLDIPPDELTSHGDSFFEFRPHSEECYVC
TLASKRGPGIKRPKLFNLKEEIKHLKGYTTLEIENEMHITDIDRLGKAIC
IKTLIIDVNEKTWKFHALNRYVSSPFLIDDVLLPSTI
Run BLAST on NCBI

transcript from alignment at scaffold_311:34387..35386

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at scaffold_311:34387..35386 (Clytia hemisphaerica)
GATCGTTGAAGGTAGCAAAACATCATCTATCAAAAAAGGAGATGATACAT AACGATTTAGTGCATGAAATTTCCAGGTTTTCTCATTAACATCAATAATG AGGGTTTTAATACAAATAGCCTTTCCTAGACGATCAATATCGGTAATATG CATCTCATTTTCAATCTCAAGTGTAGTATATCCTTTTAGATGTTTTATCT CCTCTTTGAGATTGAACAGTTTTGGTCTCTTGATTCCTGGTCCTCGCTTT GAAGCTAAAGTGCATACATAACATTCTTCACTGTGTGGTCTGAACTCAAA AAAACTGTCACCATGTGATGTAAGTTCATCGGGTGGAAtgtctaaatttt tattttttaagcgGTATAACTTCATGTGACAACGTTTGCAtaacactttt gaaaaaattgattcaTTTTCCTCGGTGACATTCAATTTAAAAACCTGTTT AATAATGGCAGAATACTCCATAACTGATTTGGGGTTTTTGTAATCTTTTT GATGACTTTTCAAACCACACATTCTGCAGATTAGTTTTAGGTTTTTAATA TGACCTTCCATGACTCAATAACATTAACTCAATAAACAAAATCAGCAGGG GTATCGGTATCGTAAAATCAAATTGGTTGGCAGAAAGGAAAGTCTAAAGT CCAGTCAAAATTCAGCAGTGGTATCGGTATCGTAAAATCAAATCGGTTGG CAGAAAGGAAAGTCTAAAGTCCAGTCAAATTTCAGCAGGGGTATCGGTAT CGTAAAATCAAATCGGTTGGCAGAAAGAAAAGTCCAAAGTCCAGTCAAAA TTCAGCAGGGGTATAGGTATCGTAAAATCAAATCGGTTGGCAGAAAGAAA AGTCCAAAGTCCAGTCAAAATTCAGCAGGGGTATCGGTATCGTAAAATCA AATCGGTTGGCAGAAAGGAAAGTCCAAAAAGTCCAGTCAAAATTCAGCAG GGCTATCAGTTTATGTTATGTCtttatttatttcaatatttatatTCTAG

Coding sequence (CDS) from alignment at scaffold_311:34387..35386

>TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_311:34387..35386 (Clytia hemisphaerica)
GATCGTTGAAGGTAGCAAAACATCATCTATCAAAAAAGGAGATGATACAT
AACGATTTAGTGCATGAAATTTCCAGGTTTTCTCATTAACATCAATAATG
AGGGTTTTAATACAAATAGCCTTTCCTAGACGATCAATATCGGTAATATG
CATCTCATTTTCAATCTCAAGTGTAGTATATCCTTTTAGATGTTTTATCT
CCTCTTTGAGATTGAACAGTTTTGGTCTCTTGATTCCTGGTCCTCGCTTT
GAAGCTAAAGTGCATACATAACATTCTTCACTGTGTGGTCTGAACTCAAA
AAAACTGTCACCATGTGATGTAAGTTCATCGGGTGGAAtgtctaaatttt
tattttttaagcgGTATAACTTCATGTGACAACGTTTGCAtaacactttt
gaaaaaattgattcaTTTTCCTCGGTGACATTCAATTTAAAAACCTGTTT
AATAATGGCAGAATACTCCATAACTGATTTGGGGTTTTTGTAATCTTTTT
GATGACTTTTCAAACCACACATTCTGCAGATTAGTTTTAGGTTTTTAATA
TGACCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036897XLOC_036897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058588-exon-scaffold_311-1491911889:34387..35386TCONS_00058588-exon-scaffold_311-1491911889:34387..35386Clytia hemisphaericaexon
TCONS_00058588-exon-scaffold_311-1510915933:34387..35386TCONS_00058588-exon-scaffold_311-1510915933:34387..35386Clytia hemisphaericaexon
TCONS_00058588-exon-scaffold_311-1575043694:34387..35386TCONS_00058588-exon-scaffold_311-1575043694:34387..35386Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058588-proteinTCONS_00058588-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:34387..35386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.02426 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 3.02426 1.76846 1.38394 1.56555 0.79371 0.889506 0.727054 0.86626 1.16335 0.588586 0 0.0273314 0 0 0 0 0.0433652 0 0 0 0.866796 0.988482 0 0.0656352 0 0.15216
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012934Znf_AD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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