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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=transcript|length=1000bp
CTAGAatataaatattgaaataaataaaGACATAACATAAACTGATAGCC
CTGCTGAATTTTGACTGGACTTTTTGGACTTTCCTTTCTGCCAACCGATT
TGATTTTACGATACCGATACCCCTGCTGAATTTTGACTGGACTTTGGACT
TTTCTTTCTGCCAACCGATTTGATTTTACGATACCTATACCCCTGCTGAA
TTTTGACTGGACTTTGGACTTTTCTTTCTGCCAACCGATTTGATTTTACG
ATACCGATACCCCTGCTGAAATTTGACTGGACTTTAGACTTTCCTTTCTG
CCAACCGATTTGATTTTACGATACCGATACCACTGCTGAATTTTGACTGG
ACTTTAGACTTTCCTTTCTGCCAACCAATTTGATTTTACGATACCGATAC
CCCTGCTGATTTTGTTTATTGAGTTAATGTTATTGAGTCATGGAAGGTCA
TATTAAAAACCTAAAACTAATCTGCAGAATGTGTGGTTTGAAAAGTCATC
AAAAAGATTACAAAAACCCCAAATCAGTTATGGAGTATTCTGCCATTATT
AAACAGGTTTTTAAATTGAATGTCACCGAGGAAAAtgaatcaattttttc
aaaagtgttaTGCAAACGTTGTCACATGAAGTTATACcgcttaaaaaata
aaaatttagacaTTCCACCCGATGAACTTACATCACATGGTGACAGTTTT
TTTGAGTTCAGACCACACAGTGAAGAATGTTATGTATGCACTTTAGCTTC
AAAGCGAGGACCAGGAATCAAGAGACCAAAACTGTTCAATCTCAAAGAGG
AGATAAAACATCTAAAAGGATATACTACACTTGAGATTGAAAATGAGATG
CATATTACCGATATTGATCGTCTAGGAAAGGCTATTTGTATTAAAACCCT
CATTATTGATGTTAATGAGAAAACCTGGAAATTTCATGCACTAAATCGTT
ATGTATCATCTCCTTTTTTGATAGATGATGTTTTGCTACCTTCAACGATC Run BLAST on NCBI protein sequence of TCONS_00058588-protein >TCONS_00058588-protein ID=TCONS_00058588-protein|Name=TCONS_00058588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MEGHIKNLKLICRMCGLKSHQKDYKNPKSVMEYSAIIKQVFKLNVTEENE
SIFSKVLCKRCHMKLYRLKNKNLDIPPDELTSHGDSFFEFRPHSEECYVC
TLASKRGPGIKRPKLFNLKEEIKHLKGYTTLEIENEMHITDIDRLGKAIC
IKTLIIDVNEKTWKFHALNRYVSSPFLIDDVLLPSTI Run BLAST on NCBI transcript from alignment at scaffold_311:34387..35386 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at scaffold_311:34387..35386 (Clytia hemisphaerica)
GATCGTTGAAGGTAGCAAAACATCATCTATCAAAAAAGGAGATGATACAT
AACGATTTAGTGCATGAAATTTCCAGGTTTTCTCATTAACATCAATAATG
AGGGTTTTAATACAAATAGCCTTTCCTAGACGATCAATATCGGTAATATG
CATCTCATTTTCAATCTCAAGTGTAGTATATCCTTTTAGATGTTTTATCT
CCTCTTTGAGATTGAACAGTTTTGGTCTCTTGATTCCTGGTCCTCGCTTT
GAAGCTAAAGTGCATACATAACATTCTTCACTGTGTGGTCTGAACTCAAA
AAAACTGTCACCATGTGATGTAAGTTCATCGGGTGGAAtgtctaaatttt
tattttttaagcgGTATAACTTCATGTGACAACGTTTGCAtaacactttt
gaaaaaattgattcaTTTTCCTCGGTGACATTCAATTTAAAAACCTGTTT
AATAATGGCAGAATACTCCATAACTGATTTGGGGTTTTTGTAATCTTTTT
GATGACTTTTCAAACCACACATTCTGCAGATTAGTTTTAGGTTTTTAATA
TGACCTTCCATGACTCAATAACATTAACTCAATAAACAAAATCAGCAGGG
GTATCGGTATCGTAAAATCAAATTGGTTGGCAGAAAGGAAAGTCTAAAGT
CCAGTCAAAATTCAGCAGTGGTATCGGTATCGTAAAATCAAATCGGTTGG
CAGAAAGGAAAGTCTAAAGTCCAGTCAAATTTCAGCAGGGGTATCGGTAT
CGTAAAATCAAATCGGTTGGCAGAAAGAAAAGTCCAAAGTCCAGTCAAAA
TTCAGCAGGGGTATAGGTATCGTAAAATCAAATCGGTTGGCAGAAAGAAA
AGTCCAAAGTCCAGTCAAAATTCAGCAGGGGTATCGGTATCGTAAAATCA
AATCGGTTGGCAGAAAGGAAAGTCCAAAAAGTCCAGTCAAAATTCAGCAG
GGCTATCAGTTTATGTTATGTCtttatttatttcaatatttatatTCTAG
Coding sequence (CDS) from alignment at scaffold_311:34387..35386 >TCONS_00058588 ID=TCONS_00058588|Name=TCONS_00058588|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_311:34387..35386 (Clytia hemisphaerica)
GATCGTTGAAGGTAGCAAAACATCATCTATCAAAAAAGGAGATGATACAT
AACGATTTAGTGCATGAAATTTCCAGGTTTTCTCATTAACATCAATAATG
AGGGTTTTAATACAAATAGCCTTTCCTAGACGATCAATATCGGTAATATG
CATCTCATTTTCAATCTCAAGTGTAGTATATCCTTTTAGATGTTTTATCT
CCTCTTTGAGATTGAACAGTTTTGGTCTCTTGATTCCTGGTCCTCGCTTT
GAAGCTAAAGTGCATACATAACATTCTTCACTGTGTGGTCTGAACTCAAA
AAAACTGTCACCATGTGATGTAAGTTCATCGGGTGGAAtgtctaaatttt
tattttttaagcgGTATAACTTCATGTGACAACGTTTGCAtaacactttt
gaaaaaattgattcaTTTTCCTCGGTGACATTCAATTTAAAAACCTGTTT
AATAATGGCAGAATACTCCATAACTGATTTGGGGTTTTTGTAATCTTTTT
GATGACTTTTCAAACCACACATTCTGCAGATTAGTTTTAGGTTTTTAATA
TGACCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058588-exon-scaffold_311-1491911889:34387..35386 | TCONS_00058588-exon-scaffold_311-1491911889:34387..35386 | Clytia hemisphaerica | exon |
| TCONS_00058588-exon-scaffold_311-1510915933:34387..35386 | TCONS_00058588-exon-scaffold_311-1510915933:34387..35386 | Clytia hemisphaerica | exon |
| TCONS_00058588-exon-scaffold_311-1575043694:34387..35386 | TCONS_00058588-exon-scaffold_311-1575043694:34387..35386 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:34387..35386 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012934 | Znf_AD |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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