|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058445 ID=TCONS_00058445|Name=TCONS_00058445|organism=Clytia hemisphaerica|type=transcript|length=2157bpRun BLAST on NCBI protein sequence of TCONS_00058445-protein >TCONS_00058445-protein ID=TCONS_00058445-protein|Name=TCONS_00058445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=711bp MNMDSEVLILLVVGCSLLIGNSHGKLTLNYWPKGESYNTVFVSGQTLLRCRun BLAST on NCBI transcript from alignment at scaffold_311:478899..495538+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058445 ID=TCONS_00058445|Name=TCONS_00058445|organism=Clytia hemisphaerica|type=transcript|length=16640bp|location=Sequence derived from alignment at scaffold_311:478899..495538+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:478899..495538+ >TCONS_00058445 ID=TCONS_00058445|Name=TCONS_00058445|organism=Clytia hemisphaerica|type=CDS|length=25596bp|location=Sequence derived from alignment at scaffold_311:478899..495538+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058445 vs. Swiss-Prot (Human)
Match: PTPRS (Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3) HSP 1 Score: 198.749 bits (504), Expect = 1.597e-52 Identity = 178/676 (26.33%), Postives = 296/676 (43.79%), Query Frame = 1
Query: 172 CDVDSDRSFQLKWYKDGKELD---FSTIKFPLWGFKFKDGSGGTLWQWPYHKDFLKDPAVFECRATNGVDPPVSKKVKFTPLDAHKLPADYPKKVDNAKQEKYPEKVFYGSNLTFYCDAKGGTNLDYQWFYNRLPL------GKIDAKRSRAVRLDYKLSADRRILNIFNIQETPQQEAINFQCMVSNNVGLLNALMFSVATMPKPTPAIPPMVPRLTVRPQNVSVGGPEQWVEFDCAAVGHPTPLYWWYH--DGLVVQAGAETGKVSVVAMR----SGSIMCHPWNKYGSTNATAYLTVTPLPYRPNPIKIAGTSVKHITIEITPNYREAEWHPDIPVNEIIIQHRPYVFNQPVETAFNVTKFKTGGKPAPWRYTFDGLEPWIYIDFRVKLVNKYGVSNVSEWYHGQTDWGAITEPVRNLKATPLSPKSFRVQWEDPPKTNGPLTRYEFYYTTRPNADIKNWIMHGVDPTDQHYAVNWTDNPRYTEVAPVLYWKVRLVGF--VNEGPFSETKAFKCLPGAPGFVTNVKLKVLTSRTIEVSWTPAENKGSGITGHDILFNRADIPKIERLWNIHTLKDPKENKVVVSNLLPNRPYEFKIYARTKESQGVPSEIVKTKTIEDAPSAPPQNVRGTAKHSQTLVISWDPPPVDHQNSPITGYTLYYS-FHDRDPSTKEI 2145
C D ++ W K GK+++ F TI+F + +G L P +D V+EC A N V ++ K T L +LP+ +P +D Q K E+ T C A G + + WF + LP+ G+I RS ++ + R L I + +ET Q + ++C+ +N+ G+ + ++ + + + PR ++ P + + P V C AVG P P W + L + G+ +V+ + S + C + G A A +TV LP P + + ITI +PD PV+ +I+++ + P + ++T RY+ GL P + V VN G SE +T A RN++A LS + VQWE+P + NG + Y YYT P + NW H VD + + ++ YT VR++ F V +GP S+ K G PG N++ + + +I +SW+P + I +++LF D + + DP VV +L PN Y F++ AR+ + G + +V+ +T++ PSAPPQ+V+ + S +++SW PPP + N + GY++ Y DP KE+
Sbjct: 54 CQATGDPKPRVTWNKKGKKVNSQRFETIEF-------DESAGAVLRIQPLRTP--RDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPN-IDMGPQLKVVERT---RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSET----FESTPIRGALQIESSEETDQGK---YECVATNSAGVRYSSPANLYV--RELREVRRVAPRFSILPMSHEIM-PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAPGTPMVTENTATSITITWDSG------NPD-PVSYYVIEYKSKSQDGPYQIKEDITT---------TRYSIGGLSPNSEYEIWVSAVNSIGQGPPSESVVTRTGEQAPASAPRNVQARMLSATTMIVQWEEPVEPNGLIRGYRVYYTMEPEHPVGNWQKHNVDDSLLTTVGSLLEDETYT---------VRVLAFTSVGDGPLSDPIQVKTQQGVPGQPMNLRAEARSETSITLSWSPPRQES--IIKYELLFREGDHGR-----EVGRTFDPT-TSYVVEDLKPNTEYAFRLAARSPQGLGAFTPVVRQRTLQSKPSAPPQDVKCVSVRSTAILVSWRPPPPETHNGALVGYSVRYRPLGSEDPEPKEV 671 The following BLAST results are available for this feature:
BLAST of TCONS_00058445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.