|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058551 ID=TCONS_00058551|Name=TCONS_00058551|organism=Clytia hemisphaerica|type=transcript|length=3595bp
tcagaGTAGAAAATctcaagaataaaaaaaaaatcataaatatttaaaaa
ttcaagAGAAGGAAACAGAAATCCAACAAAAGTAACAATGTCGTTAATAA
CATAATATGGCGACCGGCTTCCTTTACGGCTCACACGGTAACAATACTCG
AGgaaaatctaaaaagaaaacGTTAAAGGACTACAATCTTTACTTGAAAG
AGACCAGCAGCCAATCAGAAGATAATGTTGAAACAGAGAGTTTAATCAGT
TTACGAGAGGAGACCTCTGATCTCAGTTTTAGTGGTCACAATAAATTTGA
AGATTCTCATGTCGATGGTTATTTTCGACCACAGTTGAGATTAAAATCGC
CCACTAGACAATATCCTTCAATTGTGGGAGACGAGGAGAGAGAGAACGAT
GAAATGAGAGAGAGGAGAAGAGACATCGAGGATGATCATAATGTTATTGA
CGGGGAAGATTCTCAGACGCAGATGTTTTCTTCTACTGATTCGACAACAA
AGATCATcatcaaagaaacaaaaagaagaggGATAAAAGAAGAACAAAAG
GAAAGTGTAGATGGGGGATTattattgaaaaagaagaagaatagaAATGA
AGAATCAGAATCAGAAGAAAAAGATGCTGatgagaaagaaagaaacgaag
ATGTGTTATTTTTCTCTTCTTggtctccttcttcttcttcttgttcaACT
TCAAAAACGACATTCACTACTAATAAACACAAAGAAGCAAAACGAACAGT
AAGGAATAATACAAACAAACGTTACCGAACAATAACAAAGAATCAGAAAA
AGAAGAGTGAGCTTCTgttaaaaaataatcatcaaactgaagaagaagaa
gaaaaaaaagacgtTCTCCTTCAACAACGACGACAAcgaaaaggagaaaa
agaagaaacaggaGACTATTTAATTCAAACTAATAATATCAGTAATGGTA
AAAATAGTTTACAATCTTCTAGTAATCGTAAAAACATATCATCGACTGTT
TTGACTCGTCATCATCAAAAACCACAACAAACTTCTTCAAAGTTAAACAA
CAGTCGTTCTCACCAAAAAGAATATTCTATATTTTCATTGAGTAGTCATA
ATAACAAACGAAAACGTAAAAGTTTTGGTGGATTTCGAAGGAAAAGTATG
GAGGAAGGAGCAGCTACATCATCtaacgaagaagaaaatacaATCATGTC
TCCTCAACAACAGACAATACGTGCTGACCAATTCAACAAAATATGCCCAT
CACCTTTTGATGACGTACCCGGCTTCCGTCGCTCGAACACGATGCAACAC
CGAAAATCTAAAAGAGATAGTCTGAACTCTAATTCAACAGCAGCTGTAGG
TAGAATGTCAAAatcttttagttttgatttatcCTCGTCGTCGAAAGTGC
CAGGACCGGTGGCTTTAGGTCGTGATAAATGGATCCAGTTTGAGGAGGAT
CGAggtgaagaaaatatttttcaagaggAAGAGCATCAAATAAGTCCGGT
ATCTATCCAATCACCACAGAAAATAGACTTTGAATTTTTCCCAGAATTGA
CTAGCGAAACTGATCAAATGATTTTAGATTCTCATGTCGCCGAGAAAGAT
GTTGATTCTGAAAACGAAGTGGATAAACTTAAAGAACAATCTACGGGAAT
CGCTACCAGAAGTGTTGAAAACCTTTTAGAAACAGTCAACAAAACTGTGA
CTTTACTCAAAGGTTCTATAACTAATCGAGAAATATCTGACCCTGACGAA
CGTAAAGAGTTTGTTAACACTGATACTCCAGACGATTTGTCATCAATGAT
ATCTGACGAAATTATCAGTCTTGAATTTGACACCGACGAGGAGAAATTTC
GTGATACCCCCGTCAAGCAATTCCCAGACGTTTCTTTATTTCAAGTGTCA
GTTGTTGGTACGAATCGAGATAACTTGAGAATCGAACGCAAAAATAGTGT
TGATCACGTGACAAAGGATAACGGTAgtaatgatgttttggatgaaTATC
CTCCAACCACTCAACGTAATAGTTGGAAATTATGGTACCGTTATCCGgat
aagaaaatgaagatgggACGACGTCGTAAATGGACACCCGTCATTGCTCA
CGttgagaataattttctcaaattgaatAGTCTGAACGGTTGTACGCCGG
AAATTAAGCGAGAGTATCCCTTACATCCATTCTGCAGTTTCACGGCGCCT
ACAATGCATAAAGGAAATAAAGACGGAAAAGTACACTCTGTTAAATTACA
ATACGTCAAATATAAAGAAATAAGGCGTGTAAAACCAAGACTGGGTGTTG
AGCACGTCCCTGTTTTTACACCGGTTGTTAAACTATCGTGCCGTGACGTG
ATCGCGTTACGTGATTTCATGAAACGTATTGAAACTGTGATCCGGCAGAT
ACCAACGTACCGTGATGAAGACATTTCTTACGAACGTGAGGAAATCTTTA
TAGATAGCGAAGACGATTGTTCATACTTAGTGTCTGGGAGTGACGGTGTT
gttataaaatataatataacCGTTCAACTGAAACTTAGATGTTTTATATC
TGGAAATCCAGAGTTGAAGTTGTTCCTAAATGACGTCAACAACCAAGATA
TTTTATCGCGAACTAAGGAGGCATTGTCGAAAGAGAATAAACGAaccaat
aattggattgtaccagaaaattacgaatttaacCCTTGTATTGATGTGAA
AAAATCGCAGGACGAAGGAGGCGTGGTTTTCACTCCACCTGATGGATGCA
GTTTTGAGCTTTTACGTTTTCGGTTAAGGAAGCGAAACCCCCTTCCTATT
ACCGTTAAATCCAGTCTGGAAGTGTTAGCTTTAAAGTCGGTCCATTTGAA
GGCAGAGGTTCGAGTTAACGGCGACGGTAAAAGTATCCGGCATAAACGGA
ATAATGTTATTTTGTATATACCAGTACCATCATCTTGGAGtaaactgttc
ttaaaatcaAGACTTGTGGGTCGAATTGCCAAATATTTGAGTGTAAAATC
ATCTTTAAAATCTCAACGTGTGTCTAGAGCTTCTAACGCACGTGCTTCTT
TCGAGATAAGTACAGGGTGTGCAAGGTACGAACCAGCTTACGGTGCTATT
ATATGGGAGTTGGGTAACTTGCCGATTATACGTGATGGTCTACCGGCAGA
CGCGACTCATACTTTTCAATGTACTATCGAACTTCCTTTCCCGCTACATA
TAAGAGATGATTTTCAACCGTATTCTTATTTAGAATTTAACATCAAACAA
CAGATGGGATCGAACGTTTCAGTTGAAGAGGTTTTACTTTCTGATGGGCG
TGTCCCTGAAAAATGGGTGTGTTATCGTTCGAATTTCACGTACAGAATTG
AAATGCTTATTTTGGAGGATGGAAAAGAAAGGACGTAATTTTAAAATGTT
GGTTGGACTAAATCTCTTTGTTTGCTTTCTTTTCGGTACTAAACCGACgg
ttaagttttgttttgagaattctCTTTCTTAAAACAgctggaaattttca
tttcttcaatgggttattttttcgttaGCATACACATAACAAATTCccaa
ttttttgactattttcagCCAGAGTTTCAACTTATTGAAAAACCC Run BLAST on NCBI protein sequence of TCONS_00058551-protein >TCONS_00058551-protein ID=TCONS_00058551-protein|Name=TCONS_00058551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1093bp
MATGFLYGSHGNNTRGKSKKKTLKDYNLYLKETSSQSEDNVETESLISLR
EETSDLSFSGHNKFEDSHVDGYFRPQLRLKSPTRQYPSIVGDEERENDEM
RERRRDIEDDHNVIDGEDSQTQMFSSTDSTTKIIIKETKRRGIKEEQKES
VDGGLLLKKKKNRNEESESEEKDADEKERNEDVLFFSSWSPSSSSCSTSK
TTFTTNKHKEAKRTVRNNTNKRYRTITKNQKKKSELLLKNNHQTEEEEEK
KDVLLQQRRQRKGEKEETGDYLIQTNNISNGKNSLQSSSNRKNISSTVLT
RHHQKPQQTSSKLNNSRSHQKEYSIFSLSSHNNKRKRKSFGGFRRKSMEE
GAATSSNEEENTIMSPQQQTIRADQFNKICPSPFDDVPGFRRSNTMQHRK
SKRDSLNSNSTAAVGRMSKSFSFDLSSSSKVPGPVALGRDKWIQFEEDRG
EENIFQEEEHQISPVSIQSPQKIDFEFFPELTSETDQMILDSHVAEKDVD
SENEVDKLKEQSTGIATRSVENLLETVNKTVTLLKGSITNREISDPDERK
EFVNTDTPDDLSSMISDEIISLEFDTDEEKFRDTPVKQFPDVSLFQVSVV
GTNRDNLRIERKNSVDHVTKDNGSNDVLDEYPPTTQRNSWKLWYRYPDKK
MKMGRRRKWTPVIAHVENNFLKLNSLNGCTPEIKREYPLHPFCSFTAPTM
HKGNKDGKVHSVKLQYVKYKEIRRVKPRLGVEHVPVFTPVVKLSCRDVIA
LRDFMKRIETVIRQIPTYRDEDISYEREEIFIDSEDDCSYLVSGSDGVVI
KYNITVQLKLRCFISGNPELKLFLNDVNNQDILSRTKEALSKENKRTNNW
IVPENYEFNPCIDVKKSQDEGGVVFTPPDGCSFELLRFRLRKRNPLPITV
KSSLEVLALKSVHLKAEVRVNGDGKSIRHKRNNVILYIPVPSSWSKLFLK
SRLVGRIAKYLSVKSSLKSQRVSRASNARASFEISTGCARYEPAYGAIIW
ELGNLPIIRDGLPADATHTFQCTIELPFPLHIRDDFQPYSYLEFNIKQQM
GSNVSVEEVLLSDGRVPEKWVCYRSNFTYRIEMLILEDGKERT Run BLAST on NCBI transcript from alignment at scaffold_311:875222..878965- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058551 ID=TCONS_00058551|Name=TCONS_00058551|organism=Clytia hemisphaerica|type=transcript|length=3744bp|location=Sequence derived from alignment at scaffold_311:875222..878965- (Clytia hemisphaerica)
TCAGAGTAGAAAATCTCAAGAATAAAAAAAAAATCATAAATATTTAAAAA
TTCAAGAGAAGGAAACAGAAATCCAACAAAAGTAACAATGTCGTTAATAA
CATAATATGGCGACCGGCTTCCTTTACGGCTCACACGGTAACAATACTCG
AGGAAAATCTAAAAAGAAAACGTTAAAGGACTACAATCTTTACTTGAAAG
AGACCAGCAGCCAATCAGAAGATAATGTTGAAACAGAGAGTTTAATCAGT
TTACGAGAGGAGACCTCTGATCTCAGTTTTAGTGGTCACAATAAATTTGA
AGATTCTCATGTCGATGGTTATTTTCGACCACAGTTGAGATTAAAATCGC
CCACTAGACAATATCCTTCAATTGTGGGAGACGAGGAGAGAGAGAACGGT
AAGTGTGAAAAAATTGTTGAAGCAGATGGCTTTTCGACGTCGAGTTATTC
CATTGGGGGAGAAAAAGTAGTACTAAAGTATGTTAATAAAAAAAAGCAAC
TCAATTAACCAACTATCAAACCAGTAGTCTTTATCATTTTGTTTCAGATG
AAATGAGAGAGAGGAGAAGAGACATCGAGGATGATCATAATGTTATTGAC
GGGGAAGATTCTCAGACGCAGATGTTTTCTTCTACTGATTCGACAACAAA
GATCATCATCAAAGAAACAAAAAGAAGAGGGATAAAAGAAGAACAAAAGG
AAAGTGTAGATGGGGGATTATTATTGAAAAAGAAGAAGAATAGAAATGAA
GAATCAGAATCAGAAGAAAAAGATGCTGATGAGAAAGAAAGAAACGAAGA
TGTGTTATTTTTCTCTTCTTGGTCTCCTTCTTCTTCTTCTTGTTCAACTT
CAAAAACGACATTCACTACTAATAAACACAAAGAAGCAAAACGAACAGTA
AGGAATAATACAAACAAACGTTACCGAACAATAACAAAGAATCAGAAAAA
GAAGAGTGAGCTTCTGTTAAAAAATAATCATCAAACTGAAGAAGAAGAAG
AAAAAAAAGACGTTCTCCTTCAACAACGACGACAACGAAAAGGAGAAAAA
GAAGAAACAGGAGACTATTTAATTCAAACTAATAATATCAGTAATGGTAA
AAATAGTTTACAATCTTCTAGTAATCGTAAAAACATATCATCGACTGTTT
TGACTCGTCATCATCAAAAACCACAACAAACTTCTTCAAAGTTAAACAAC
AGTCGTTCTCACCAAAAAGAATATTCTATATTTTCATTGAGTAGTCATAA
TAACAAACGAAAACGTAAAAGTTTTGGTGGATTTCGAAGGAAAAGTATGG
AGGAAGGAGCAGCTACATCATCTAACGAAGAAGAAAATACAATCATGTCT
CCTCAACAACAGACAATACGTGCTGACCAATTCAACAAAATATGCCCATC
ACCTTTTGATGACGTACCCGGCTTCCGTCGCTCGAACACGATGCAACACC
GAAAATCTAAAAGAGATAGTCTGAACTCTAATTCAACAGCAGCTGTAGGT
AGAATGTCAAAATCTTTTAGTTTTGATTTATCCTCGTCGTCGAAAGTGCC
AGGACCGGTGGCTTTAGGTCGTGATAAATGGATCCAGTTTGAGGAGGATC
GAGGTGAAGAAAATATTTTTCAAGAGGAAGAGCATCAAATAAGTCCGGTA
TCTATCCAATCACCACAGAAAATAGACTTTGAATTTTTCCCAGAATTGAC
TAGCGAAACTGATCAAATGATTTTAGATTCTCATGTCGCCGAGAAAGATG
TTGATTCTGAAAACGAAGTGGATAAACTTAAAGAACAATCTACGGGAATC
GCTACCAGAAGTGTTGAAAACCTTTTAGAAACAGTCAACAAAACTGTGAC
TTTACTCAAAGGTTCTATAACTAATCGAGAAATATCTGACCCTGACGAAC
GTAAAGAGTTTGTTAACACTGATACTCCAGACGATTTGTCATCAATGATA
TCTGACGAAATTATCAGTCTTGAATTTGACACCGACGAGGAGAAATTTCG
TGATACCCCCGTCAAGCAATTCCCAGACGTTTCTTTATTTCAAGTGTCAG
TTGTTGGTACGAATCGAGATAACTTGAGAATCGAACGCAAAAATAGTGTT
GATCACGTGACAAAGGATAACGGTAGTAATGATGTTTTGGATGAATATCC
TCCAACCACTCAACGTAATAGTTGGAAATTATGGTACCGTTATCCGGATA
AGAAAATGAAGATGGGACGACGTCGTAAATGGACACCCGTCATTGCTCAC
GTTGAGAATAATTTTCTCAAATTGAATAGTCTGAACGGTTGTACGCCGGA
AATTAAGCGAGAGTATCCCTTACATCCATTCTGCAGTTTCACGGCGCCTA
CAATGCATAAAGGAAATAAAGACGGAAAAGTACACTCTGTTAAATTACAA
TACGTCAAATATAAAGAAATAAGGCGTGTAAAACCAAGACTGGGTGTTGA
GCACGTCCCTGTTTTTACACCGGTTGTTAAACTATCGTGCCGTGACGTGA
TCGCGTTACGTGATTTCATGAAACGTATTGAAACTGTGATCCGGCAGATA
CCAACGTACCGTGATGAAGACATTTCTTACGAACGTGAGGAAATCTTTAT
AGATAGCGAAGACGATTGTTCATACTTAGTGTCTGGGAGTGACGGTGTTG
TTATAAAATATAATATAACCGTTCAACTGAAACTTAGATGTTTTATATCT
GGAAATCCAGAGTTGAAGTTGTTCCTAAATGACGTCAACAACCAAGATAT
TTTATCGCGAACTAAGGAGGCATTGTCGAAAGAGAATAAACGAACCAATA
ATTGGATTGTACCAGAAAATTACGAATTTAACCCTTGTATTGATGTGAAA
AAATCGCAGGACGAAGGAGGCGTGGTTTTCACTCCACCTGATGGATGCAG
TTTTGAGCTTTTACGTTTTCGGTTAAGGAAGCGAAACCCCCTTCCTATTA
CCGTTAAATCCAGTCTGGAAGTGTTAGCTTTAAAGTCGGTCCATTTGAAG
GCAGAGGTTCGAGTTAACGGCGACGGTAAAAGTATCCGGCATAAACGGAA
TAATGTTATTTTGTATATACCAGTACCATCATCTTGGAGTAAACTGTTCT
TAAAATCAAGACTTGTGGGTCGAATTGCCAAATATTTGAGTGTAAAATCA
TCTTTAAAATCTCAACGTGTGTCTAGAGCTTCTAACGCACGTGCTTCTTT
CGAGATAAGTACAGGGTGTGCAAGGTACGAACCAGCTTACGGTGCTATTA
TATGGGAGTTGGGTAACTTGCCGATTATACGTGATGGTCTACCGGCAGAC
GCGACTCATACTTTTCAATGTACTATCGAACTTCCTTTCCCGCTACATAT
AAGAGATGATTTTCAACCGTATTCTTATTTAGAATTTAACATCAAACAAC
AGATGGGATCGAACGTTTCAGTTGAAGAGGTTTTACTTTCTGATGGGCGT
GTCCCTGAAAAATGGGTGTGTTATCGTTCGAATTTCACGTACAGAATTGA
AATGCTTATTTTGGAGGATGGAAAAGAAAGGACGTAATTTTAAAATGTTG
GTTGGACTAAATCTCTTTGTTTGCTTTCTTTTCGGTACTAAACCGACGGT
TAAGTTTTGTTTTGAGAATTCTCTTTCTTAAAACAGCTGGAAATTTTCAT
TTCTTCAATGGGTTATTTTTTCGTTAGCATACACATAACAAATTCCCAAT
TTTTTGACTATTTTCAGCCAGAGTTTCAACTTATTGAAAAACCC Coding sequence (CDS) from alignment at scaffold_311:875222..878965- >TCONS_00058551 ID=TCONS_00058551|Name=TCONS_00058551|organism=Clytia hemisphaerica|type=CDS|length=6564bp|location=Sequence derived from alignment at scaffold_311:875222..878965- (Clytia hemisphaerica)
ATGAAATGAGAGAGAGGAGAAGAGACATCGAGGATGATCATAATGTTATT
GACGGGGAAGATTCTCAGACGCAGATGTTTTCTTCTACTGATTCGACAAC
AAAGATCATCATCAAAGAAACAAAAAGAAGAGGGATAAAAGAAGAACAAA
AGGAAAGTGTAGATGGGGGATTATTATTGAAAAAGAAGAAGAATAGAAAT
GAAGAATCAGAATCAGAAGAAAAAGATGCTGATGAGAAAGAAAGAAACGA
AGATGTGTTATTTTTCTCTTCTTGGTCTCCTTCTTCTTCTTCTTGTTCAA
CTTCAAAAACGACATTCACTACTAATAAACACAAAGAAGCAAAACGAACA
GTAAGGAATAATACAAACAAACGTTACCGAACAATAACAAAGAATCAGAA
AAAGAAGAGTGAGCTTCTGTTAAAAAATAATCATCAAACTGAAGAAGAAG
AAGAAAAAAAAGACGTTCTCCTTCAACAACGACGACAACGAAAAGGAGAA
AAAGAAGAAACAGGAGACTATTTAATTCAAACTAATAATATCAGTAATGG
TAAAAATAGTTTACAATCTTCTAGTAATCGTAAAAACATATCATCGACTG
TTTTGACTCGTCATCATCAAAAACCACAACAAACTTCTTCAAAGTTAAAC
AACAGTCGTTCTCACCAAAAAGAATATTCTATATTTTCATTGAGTAGTCA
TAATAACAAACGAAAACGTAAAAGTTTTGGTGGATTTCGAAGGAAAAGTA
TGGAGGAAGGAGCAGCTACATCATCTAACGAAGAAGAAAATACAATCATG
TCTCCTCAACAACAGACAATACGTGCTGACCAATTCAACAAAATATGCCC
ATCACCTTTTGATGACGTACCCGGCTTCCGTCGCTCGAACACGATGCAAC
ACCGAAAATCTAAAAGAGATAGTCTGAACTCTAATTCAACAGCAGCTGTA
GGTAGAATGTCAAAATCTTTTAGTTTTGATTTATCCTCGTCGTCGAAAGT
GCCAGGACCGGTGGCTTTAGGTCGTGATAAATGGATCCAGTTTGAGGAGG
ATCGAGGTGAAGAAAATATTTTTCAAGAGGAAGAGCATCAAATAAGTCCG
GTATCTATCCAATCACCACAGAAAATAGACTTTGAATTTTTCCCAGAATT
GACTAGCGAAACTGATCAAATGATTTTAGATTCTCATGTCGCCGAGAAAG
ATGTTGATTCTGAAAACGAAGTGGATAAACTTAAAGAACAATCTACGGGA
ATCGCTACCAGAAGTGTTGAAAACCTTTTAGAAACAGTCAACAAAACTGT
GACTTTACTCAAAGGTTCTATAACTAATCGAGAAATATCTGACCCTGACG
AACGTAAAGAGTTTGTTAACACTGATACTCCAGACGATTTGTCATCAATG
ATATCTGACGAAATTATCAGTCTTGAATTTGACACCGACGAGGAGAAATT
TCGTGATACCCCCGTCAAGCAATTCCCAGACGTTTCTTTATTTCAAGTGT
CAGTTGTTGGTACGAATCGAGATAACTTGAGAATCGAACGCAAAAATAGT
GTTGATCACGTGACAAAGGATAACGGTAGTAATGATGTTTTGGATGAATA
TCCTCCAACCACTCAACGTAATAGTTGGAAATTATGGTACCGTTATCCGG
ATAAGAAAATGAAGATGGGACGACGTCGTAAATGGACACCCGTCATTGCT
CACGTTGAGAATAATTTTCTCAAATTGAATAGTCTGAACGGTTGTACGCC
GGAAATTAAGCGAGAGTATCCCTTACATCCATTCTGCAGTTTCACGGCGC
CTACAATGCATAAAGGAAATAAAGACGGAAAAGTACACTCTGTTAAATTA
CAATACGTCAAATATAAAGAAATAAGGCGTGTAAAACCAAGACTGGGTGT
TGAGCACGTCCCTGTTTTTACACCGGTTGTTAAACTATCGTGCCGTGACG
TGATCGCGTTACGTGATTTCATGAAACGTATTGAAACTGTGATCCGGCAG
ATACCAACGTACCGTGATGAAGACATTTCTTACGAACGTGAGGAAATCTT
TATAGATAGCGAAGACGATTGTTCATACTTAGTGTCTGGGAGTGACGGTG
TTGTTATAAAATATAATATAACCGTTCAACTGAAACTTAGATGTTTTATA
TCTGGAAATCCAGAGTTGAAGTTGTTCCTAAATGACGTCAACAACCAAGA
TATTTTATCGCGAACTAAGGAGGCATTGTCGAAAGAGAATAAACGAACCA
ATAATTGGATTGTACCAGAAAATTACGAATTTAACCCTTGTATTGATGTG
AAAAAATCGCAGGACGAAGGAGGCGTGGTTTTCACTCCACCTGATGGATG
CAGTTTTGAGCTTTTACGTTTTCGGTTAAGGAAGCGAAACCCCCTTCCTA
TTACCGTTAAATCCAGTCTGGAAGTGTTAGCTTTAAAGTCGGTCCATTTG
AAGGCAGAGGTTCGAGTTAACGGCGACGGTAAAAGTATCCGGCATAAACG
GAATAATGTTATTTTGTATATACCAGTACCATCATCTTGGAGTAAACTGT
TCTTAAAATCAAGACTTGTGGGTCGAATTGCCAAATATTTGAGTGTAAAA
TCATCTTTAAAATCTCAACGTGTGTCTAGAGCTTCTAACGCACGTGCTTC
TTTCGAGATAAGTACAGGGTGTGCAAGGTACGAACCAGCTTACGGTGCTA
TTATATGGGAGTTGGGTAACTTGCCGATTATACGTGATGGTCTACCGGCA
GACGCGACTCATACTTTTCAATGTACTATCGAACTTCCTTTCCCGCTACA
TATAAGAGATGATTTTCAACCGTATTCTTATTTAGAATTTAACATCAAAC
AACAGATGGGATCGAACGTTTCAGTTGAAGAGGTTTTACTTTCTGATGGG
CGTGTCCCTGAAAAATGGGTGTGTTATCGTTCGAATTTCACGTACAGAAT
TGAAATGCTTATTTTGGAGGATGGAAAAGAAAGGACGTAAATGGCGACCG
GCTTCCTTTACGGCTCACACGGTAACAATACTCGAGGAAAATCTAAAAAG
AAAACGTTAAAGGACTACAATCTTTACTTGAAAGAGACCAGCAGCCAATC
AGAAGATAATGTTGAAACAGAGAGTTTAATCAGTTTACGAGAGGAGACCT
CTGATCTCAGTTTTAGTGGTCACAATAAATTTGAAGATTCTCATGTCGAT
GGTTATTTTCGACCACAGTTGAGATTAAAATCGCCCACTAGACAATATCC
TTCAATTGTGGGAGACGAGGAGAGAGAGAACGATGAAATGAGAGAGAGGA
GAAGAGACATCGAGGATGATCATAATGTTATTGACGGGGAAGATTCTCAG
ACGCAGATGTTTTCTTCTACTGATTCGACAACAAAGATCATCATCAAAGA
AACAAAAAGAAGAGGGATAAAAGAAGAACAAAAGGAAAGTGTAGATGGGG
GATTATTATTGAAAAAGAAGAAGAATAGAAATGAAGAATCAGAATCAGAA
GAAAAAGATGCTGATGAGAAAGAAAGAAACGAAGATGTGTTATTTTTCTC
TTCTTGGTCTCCTTCTTCTTCTTCTTGTTCAACTTCAAAAACGACATTCA
CTACTAATAAACACAAAGAAGCAAAACGAACAGTAAGGAATAATACAAAC
AAACGTTACCGAACAATAACAAAGAATCAGAAAAAGAAGAGTGAGCTTCT
GTTAAAAAATAATCATCAAACTGAAGAAGAAGAAGAAAAAAAAGACGTTC
TCCTTCAACAACGACGACAACGAAAAGGAGAAAAAGAAGAAACAGGAGAC
TATTTAATTCAAACTAATAATATCAGTAATGGTAAAAATAGTTTACAATC
TTCTAGTAATCGTAAAAACATATCATCGACTGTTTTGACTCGTCATCATC
AAAAACCACAACAAACTTCTTCAAAGTTAAACAACAGTCGTTCTCACCAA
AAAGAATATTCTATATTTTCATTGAGTAGTCATAATAACAAACGAAAACG
TAAAAGTTTTGGTGGATTTCGAAGGAAAAGTATGGAGGAAGGAGCAGCTA
CATCATCTAACGAAGAAGAAAATACAATCATGTCTCCTCAACAACAGACA
ATACGTGCTGACCAATTCAACAAAATATGCCCATCACCTTTTGATGACGT
ACCCGGCTTCCGTCGCTCGAACACGATGCAACACCGAAAATCTAAAAGAG
ATAGTCTGAACTCTAATTCAACAGCAGCTGTAGGTAGAATGTCAAAATCT
TTTAGTTTTGATTTATCCTCGTCGTCGAAAGTGCCAGGACCGGTGGCTTT
AGGTCGTGATAAATGGATCCAGTTTGAGGAGGATCGAGGTGAAGAAAATA
TTTTTCAAGAGGAAGAGCATCAAATAAGTCCGGTATCTATCCAATCACCA
CAGAAAATAGACTTTGAATTTTTCCCAGAATTGACTAGCGAAACTGATCA
AATGATTTTAGATTCTCATGTCGCCGAGAAAGATGTTGATTCTGAAAACG
AAGTGGATAAACTTAAAGAACAATCTACGGGAATCGCTACCAGAAGTGTT
GAAAACCTTTTAGAAACAGTCAACAAAACTGTGACTTTACTCAAAGGTTC
TATAACTAATCGAGAAATATCTGACCCTGACGAACGTAAAGAGTTTGTTA
ACACTGATACTCCAGACGATTTGTCATCAATGATATCTGACGAAATTATC
AGTCTTGAATTTGACACCGACGAGGAGAAATTTCGTGATACCCCCGTCAA
GCAATTCCCAGACGTTTCTTTATTTCAAGTGTCAGTTGTTGGTACGAATC
GAGATAACTTGAGAATCGAACGCAAAAATAGTGTTGATCACGTGACAAAG
GATAACGGTAGTAATGATGTTTTGGATGAATATCCTCCAACCACTCAACG
TAATAGTTGGAAATTATGGTACCGTTATCCGGATAAGAAAATGAAGATGG
GACGACGTCGTAAATGGACACCCGTCATTGCTCACGTTGAGAATAATTTT
CTCAAATTGAATAGTCTGAACGGTTGTACGCCGGAAATTAAGCGAGAGTA
TCCCTTACATCCATTCTGCAGTTTCACGGCGCCTACAATGCATAAAGGAA
ATAAAGACGGAAAAGTACACTCTGTTAAATTACAATACGTCAAATATAAA
GAAATAAGGCGTGTAAAACCAAGACTGGGTGTTGAGCACGTCCCTGTTTT
TACACCGGTTGTTAAACTATCGTGCCGTGACGTGATCGCGTTACGTGATT
TCATGAAACGTATTGAAACTGTGATCCGGCAGATACCAACGTACCGTGAT
GAAGACATTTCTTACGAACGTGAGGAAATCTTTATAGATAGCGAAGACGA
TTGTTCATACTTAGTGTCTGGGAGTGACGGTGTTGTTATAAAATATAATA
TAACCGTTCAACTGAAACTTAGATGTTTTATATCTGGAAATCCAGAGTTG
AAGTTGTTCCTAAATGACGTCAACAACCAAGATATTTTATCGCGAACTAA
GGAGGCATTGTCGAAAGAGAATAAACGAACCAATAATTGGATTGTACCAG
AAAATTACGAATTTAACCCTTGTATTGATGTGAAAAAATCGCAGGACGAA
GGAGGCGTGGTTTTCACTCCACCTGATGGATGCAGTTTTGAGCTTTTACG
TTTTCGGTTAAGGAAGCGAAACCCCCTTCCTATTACCGTTAAATCCAGTC
TGGAAGTGTTAGCTTTAAAGTCGGTCCATTTGAAGGCAGAGGTTCGAGTT
AACGGCGACGGTAAAAGTATCCGGCATAAACGGAATAATGTTATTTTGTA
TATACCAGTACCATCATCTTGGAGTAAACTGTTCTTAAAATCAAGACTTG
TGGGTCGAATTGCCAAATATTTGAGTGTAAAATCATCTTTAAAATCTCAA
CGTGTGTCTAGAGCTTCTAACGCACGTGCTTCTTTCGAGATAAGTACAGG
GTGTGCAAGGTACGAACCAGCTTACGGTGCTATTATATGGGAGTTGGGTA
ACTTGCCGATTATACGTGATGGTCTACCGGCAGACGCGACTCATACTTTT
CAATGTACTATCGAACTTCCTTTCCCGCTACATATAAGAGATGATTTTCA
ACCGTATTCTTATTTAGAATTTAACATCAAACAACAGATGGGATCGAACG
TTTCAGTTGAAGAGGTTTTACTTTCTGATGGGCGTGTCCCTGAAAAATGG
GTGTGTTATCGTTCGAATTTCACGTACAGAATTGAAATGCTTATTTTGGA
GGATGGAAAAGAAAGGACGTAAATGGCGACCGGCTTCCTTTACGGCTCAC
ACGGTAACAATACTCGAGGAAAATCTAAAAAGAAAACGTTAAAGGACTAC
AATCTTTACTTGAAAGAGACCAGCAGCCAATCAGAAGATAATGTTGAAAC
AGAGAGTTTAATCAGTTTACGAGAGGAGACCTCTGATCTCAGTTTTAGTG
GTCACAATAAATTTGAAGATTCTCATGTCGATGGTTATTTTCGACCACAG
TTGAGATTAAAATCGCCCACTAGACAATATCCTTCAATTGTGGGAGACGA
GGAGAGAGAGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058551-exon-scaffold_311-1575043694:878568..878965 | TCONS_00058551-exon-scaffold_311-1575043694:878568..878965 | Clytia hemisphaerica | exon |
| TCONS_00058551-exon-scaffold_311-1575043694:875222..878418 | TCONS_00058551-exon-scaffold_311-1575043694:875222..878418 | Clytia hemisphaerica | exon |
| TCONS_00058551-exon-scaffold_311-1510915933:878568..878965 | TCONS_00058551-exon-scaffold_311-1510915933:878568..878965 | Clytia hemisphaerica | exon |
| TCONS_00058551-exon-scaffold_311-1510915933:875222..878418 | TCONS_00058551-exon-scaffold_311-1510915933:875222..878418 | Clytia hemisphaerica | exon |
| TCONS_00058551-exon-scaffold_311-1491911889:878568..878965 | TCONS_00058551-exon-scaffold_311-1491911889:878568..878965 | Clytia hemisphaerica | exon |
| TCONS_00058551-exon-scaffold_311-1491911889:875222..878418 | TCONS_00058551-exon-scaffold_311-1491911889:875222..878418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:875222..878965 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016192 | vesicle-mediated transport |
| GO:0006886 | intracellular protein transport |
| GO:0006897 | endocytosis |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030131 | clathrin adaptor complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006897 |
endocytosis |
| biological_process |
GO:0006886 |
intracellular protein transport |
| biological_process |
GO:0016192 |
vesicle-mediated transport |
| cellular_component |
GO:0030131 |
clathrin adaptor complex |
Blast
BLAST of TCONS_00058551 vs. Swiss-Prot (Human)
Match: STON2 (Stonin-2 OS=Homo sapiens GN=STON2 PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.593e-42 Identity = 123/478 (25.73%), Postives = 226/478 (47.28%), Query Frame = 2
Query: 1988 LDEYPPTTQR----NSWKLWYRYPDKKMKMGRRRKWTPVIAHV-ENNFLKLNSLNGCTPEIKREYPLHPFCSFTAPTMHKGNKDGKVHSVKLQYVKYKEIRRVKPRLGVEHVPVFTPVVKLSCRDVIALRDFMKRIETVIRQIPTYRDE----DISYEREEIFIDSEDDCSYLVSGSDGVVIKYNITVQLKLRCFISGNPELKLFLNDVNNQDILSRTKEALSKEN---KRTNNWIVPENYEFNPCIDVKKSQDEGGVVFTPPDGCSFELLRFR-LRKRNPLPITVKSSLEVLALKSVHLKAEVRVNGDGKSIRHKRN-----NVILYIPVPSSWSKLFLKSRLVGRIAKYLSVK----SSLKSQRVSRASNARASFEISTGCARYEPAYGAIIWELGNLPIIRDGLPADATHTFQCTIELPFPLHIRDDFQPYSYLEFNIKQQMGSNVSVEEVLLSDGRVPEKWVCYRSNFTYRIEM 3355
LD +PP + R + W + R P+KK M R W P+ + + +L+L G RE+ L + P + +++G++HS+++ V YKE ++ +P+ V H V+KL + F+ ++ + +P + ++Y EEI +D D+ S +VS D ++++++ ++ + F+SG E +L LN DIL + E + +++ T WI F+ C+D + ++F P D C FEL+RFR + LP T++++ V + V +++ +R++ + R NV++ PVPS W K F + ++G K L K +S S V S + ++ G A+YE A+ +I+W + LP + H F C +EL + F + +EF++ S SV + + D KWV Y ++++Y++ +
Sbjct: 412 LDAHPPGSARSQPRDGWPMMLRIPEKKNIMSSRH-WGPIFVKLTDTGYLQLYYEQGLEKPF-REFKLEICHEISEPRLQNYDENGRIHSLRIDRVTYKEKKKYQPKPAVAHTAEREQVIKLGTTNYDDFLSFIHAVQDRLMDLPVLSMDLSTVGLNYLEEEITVDVRDEFSGIVSKGDNQILQHHVLTRIHILSFLSGLAECRLGLN-----DILVKGNEIVLRQDIMPTTTTKWIKLHECRFHGCVDEDVFHNSRVILFNPLDACRFELMRFRTVFAEKTLPFTLRTATSVNGAE-VEVQSWLRMSTGFSANRDPLTQVPCENVMIRYPVPSEWVKNFRRESVLGE--KSLKAKVNRGASFGSTSV---SGSEPVMRVTLGTAKYEHAFNSIVWRINRLPDKNSA--SGHPHCFFCHLELGSDREVPSRFANHVNVEFSMPTTSASKASVRSISVEDKTDVRKWVNYSAHYSYQVAL 874
The following BLAST results are available for this feature:
|
