TCONS_00058560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058560
Unique NameTCONS_00058560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1101

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058560 ID=TCONS_00058560|Name=TCONS_00058560|organism=Clytia hemisphaerica|type=transcript|length=1101bp
CgattttgaagaatttcttcaatTGATGACCAACACTGAACGATTTCTGG
AAAGTGTCAtcTGCAAAGAACAAGAAGCCGAAGCCACACAGCAACGCGAA
GTTTTACTCTTCGAAGCATTGACCCAATTCATGAGAAAATCTGCACTACA
TTCAATCAACGAAATTGTCGGCTATTATcatcaaaaatacaagaaagtTC
AAACGCCCCATGTGATCCGCCATTATGCAGCAGGCGCCCGTCTGATTGGT
TTATCTGAGCAACAAATCAGACGCCACCTTGAACAATTGAGACGTTCATC
TATGAGTAATAATAAAAGTCCATACGCTCAACCACCATACGCATTCATGC
ATTTATGTAGACAAAAAGAGGTCCCAAGACCTGTTAAACTTGAAAAGATC
ACGGAGATCACGGAAGAGAGTTCGCCAACAAAAATTCGTGagaatttgaa
gattttggtaCCAGATGCACCACGACAATCCACATGCAAAGGACGTATTC
GTTTGAAGATTGTATGGGACCAAAAAGAAAAGGATGAGAAGGCTGGTAAA
CTACCAAGTCTTATACCCACCAAACCTCACGAGACAGCTACATCTCAATC
ATTACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCACAACGGTTTAACC
CAGCTAACATTCGTGACCATTTACCTATTTTAACAACAAATAGTGTCAAA
CGTGAATTGAAAGCCGATGGAGGTGTTCTTATTGATCCAGATAAACCTCA
TTCGTTGGATTTCGATGACGCGCCTGGATTAAGATTCAAGGTTACAGGTC
TTACAAACCAATACTACAAAGGGATTCAGAATCAGAAAAGTAGAGAAGCT
GAAACACATTGGCATAGTCTCGGCGTCAACCGGATGCCGTCCCAACATTT
ACGTGAGTCTTATCGACGTGTATTTAAGGCTTACGTAGATTATCgtaaca
cccctgtatcatcgCTGTGCTCCAGCTCGATTGCATGATATGAAATACTT
GTCTTTTTAGTGTGTCTTGAgaatataaacaaaaatcgtaaCTAAGCCAC
TAACTAATTTTATTTCGTGTTTAAAGTTCCATTTCATTAAGAATTTACAA
G
Run BLAST on NCBI

transcript from alignment at scaffold_311:1028818..1036386-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058560 ID=TCONS_00058560|Name=TCONS_00058560|organism=Clytia hemisphaerica|type=transcript|length=7569bp|location=Sequence derived from alignment at scaffold_311:1028818..1036386- (Clytia hemisphaerica)
CGATTTTGAAGAATTTCTTCAATTGATGACCAACACTGAACGATTTCTGG AAAGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTTGTTTTTTTTTACT TGAAGTTTTCATTATACAGTTCATTGAGTTTGAAGCCCCAAAGAGGCTAG AGATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGGATTTAGCCCATTT GGGGCTTTGAAATCAACGATACAGTTACAGTCTTCATAAATCGAGAGGTT TCTTACGAACCTTTTCATTCAAAAAATAATTCTTGAAAATGTAAAGATAA AATAACTAAATTAGAAAAAAAAACCTTGGAAAATTCTTCTGATGAATTTG AAGTAGTAGTTGAAAAATAAAGACCACTATGAATTAGTGCTTTTTCGTTT TTTTAGTCAAAACATACAGAGATTTTGAAGAAAAGCCGTTGTATAATTAT GATTAGATAGTCTATCCTCGCCCTACAGGCAATTCACTATTGCTTTTTCT ATTGATGTTTTATTGATTTTTTTTGTAGTCTGCAAAGAACAAGAAGCCGA AGCCACACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGACCCAATTCA TGAGAAAATCTGCACTACATTCAATCAACGAAATTGTCGGGTAAGGATCG AGGCTTGTACGATGATAATAACGCACAAATCTCATTTAAACATNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNAATGGTTCCTACCCTAAAAATTGATGTTTTTTCAAGTT TTTATAACCTATGGCACATTTTAAGAGGGTAATCAGCATGATCTGTTCCT AACATAAATCCCTATCTTTACAATTGATGGATACTTCCTATCTATTAATG CGAGATATAACCAATAGGAAAGAAACTTTAACGAATTCGAAAGGAAATTC AATTTACACTCTTTTTTCGAGCTGCTTAAAGCTGAATTTTTAAAATTCAT TCCCACAAAATTTAGAAATTTTTTCTTGAATTTCTAAAATAAATCCCGCA AAATCCCTCCAAATACTGCAAAAGTGAGCCCATTCTATTAAGTAAACTTC TATTATTTAGGTAATGGTATTTTCACGTTTTTTCTTTCTAGCCTTTCGCG AAGTGTTTGATTTGTTTGACAGTAATGGTGGAGGTTCCATCGATGCGGAT GAATTGGACGAAGCACTTCGATCAGCTGATATTCAAGTTACCAAAGATGA AATCAATGAAGTCCTCTCTTCAATGGATAAAGATGGTTTGTGCCTTTTTT TTGAAACGACGCTTTCTGACTTTATCGTCTTACTGTAGGCTAATGATAGC GAGTTTATGTATTTGTGTTTTTCAGTGAATGAGACGGTTAGCTTCTGATT TCTCTAGAACCTGATCAACTGAGGACAACGGTAAACAAGCACTTTTTACC GTCCTCGATTATTGTTGATCAAAAGTGCGGGTTTATTCAAATCGCCTCTG TCACTCTGCCGTCCTCAAAAGTGCCAATATATAAACTCTCTAATTCCCGA TAATCACTTCAGATTCAGATATATAAAAGATGTATATAAGGTTGTGATCA GATCAGGGAAAAAATCTCTTAAGAGGAATAATTCAAGTTACTTATAAAGC GTATGCTTTTTCTGCTAGAAATCTGAGACAGATATTTAACTAGCTTCCCT GGATATTTCTGAACTTCTACTGACTATAGATAAATTCAAAATTATGCCAT AAATTGCAAGAGAGAAAAACTGTCGAGTGACCAATTCTAATTTGAAGTAT AGTCTTTTAAATAAATTTTGTAAGCAAAGGTCATCTTGTTCGTAAACATA TTTTCGTATCCTCAACAAATTTCTCGTTATTAGATAATCTATAAATTTTA CTAGTTTCATTAAAACTTCTTTATATATAAATCTTTGATAGAAATCATTA TACCTTTATAATCTTCAAATTATTGTTATTTTTAGGTAATGGAGAAATCG ATTTTGAAGAATTTCTTCAATTGATGACCAACACTGAACGATTTCTGGAA AGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTTGTTTTTTTTTACTTG AAGTTTTCATTATACAGTTCATTGAGTTTGAAGCCCCAAAGAGGCTAGAG ATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGGATTCAGCCCATTTGG GGCTTTGAAATCAACGATACAGTCTTCATAAATCGAGAGGTTTCTTACGG ACCTTTTCATTCAAAAAATAATTCTTGAAAATGTAAAGATAAAATAACTA AATTAGAAAAAAAAAACCTTGGAAAATTCTTCTGATGAATTTGAAGTAGT AGTTGAAAAATAAAGACCACTATGAATTAGTGCTTTTTCGTTTTTAATCA AAGCATACAGAGATTTGAAGAAAAGCCGTTGTATAATTATGATTAGATAG TCTATCCTCACCCTACAGGCAATTCACTATTGCTTTTTCTATTGATTTTT ATTGATTTTTTTTTTTTTTTGTAGTCTGCAAAGAACAAGAAGCCGAAGCC ACACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGACCCAATTCATGAG AAAATCTGCACTACATTCAATCAACGAAATTGTCGGGTAAGGATCGAGGC TTGTACGATGATAATAACGCACAAATCTCATTTAAACATATTTTTGTTAC AGTGGAGTCTCCATAATTTGAACCTCTATAACTCGAATAAATCCTTAACT CTAATAACAAGTTTATGTTGCCCGAGTTATAGAGACTCAGAGCTGTATCT GTAATAGTAGGGCCAACCCTTAGGATTTAGAAGTACAAGACATGCATCAG TATACATTTTTTACTTGGAATTTCATGCTCCATCCGATTATAGCAAAAAA AATTTGAATTCGTCTCTTGAATATCGTCAATGTTTTACTGATTTTGGAGG TGACGAGTTTTGCCTATAACGCCAGTTTTTTACTTATTGATAATTTTGTA AAGCCTTATTCGCGGGCCCCCTTTCAAAAATATCTCAAAATCTCATCTAC CTTCGAACCAATTATATGCATGTGTTTCATGAATGATGGATCCATGAACA TTAGTTAGGTGAAAGGTGAACGTTGAAAGAACGTCTTGTAGATTAGCTCA TACGAGCTAGATGTATACTTTACATACATTGGTTGTCATACGTGGCAAAA GCTGAGATAAGTTTATACGTGTTTTCTGACTAGAGGAATCCTCATCTGAT ATATATTTGAATGATACGCTACACGTTTTTTTTATAAGGACATTCAAAAT TTTCTTAAAATTGCTTACTTTTTGAGTTTCAAGCCTAAAAATGTTCTTGT CATGTTCTTATTTTCACCATTTTATTAGTAATTTGGTCCATTTTCCTAAG AAATTGGATGTTTTCAAGTCCGTGAAGCCTTAAAATGTTATCCTTAAGAT CTTGTTCTTAATATTTTGACCATCGAAGCCTTATTTTCGAGCTTGTTTTC TTATAAAGTTTGTTCTTATGAAAAACGTGAAGTGAGACCGGCCGTTTAGC TTCAAATTTTGAATTTACGCGCTCGATTATTTTCAAAACAATTTTTTTTC TCCAACATCTCAGACACAGTTCATGTTTGCAACTATTTATCAAATCTTTA ACAGCTATCAAATAAACATCTATTTTTTATTTTTTCTAAAAAATTTCGGA TTTCCTCTAATTAATTAGGTTAACAGTGTGACTTTATAGAATCTGTGATA GAAGTTTTGTTATTTAAAAAAGTAAAGTAAAGAATAATGATATATTGTAT CTAGTTTTGGGAAATATTTTGCCGAAGAACCATGAGTCCCGCACTCATGG TTCTTCGAACTTGATTTAGTAGAAGATTGGTTTAGGAAATCCCATGAGGT TTTTTACTCAACAGATTTTAGAAGAAATCTTAAATTGTTAGCCCTTCTCA TATATATTATCCACTTTTCTTTTTAAGCTATTATCATCAAAAATACAAGA AAGTTCAAACGCCCCATGTGATCCGCCATTATGCAGCAGGCGCCCGTCTG ATTGGTTTATCTGAGCAACAAATCAGACGCCACCTTGAACAATTGAGACG TTCATCTATGAGTAATAATAAAAGTCCATACGCTCAACCACCATACGCAT TCATGCATTTATGTAGACAAAAAGAGGTCCCAAGACCTGTTAAACTTGAA AAGGTAGCTTTTTATTTTAACACACTTTGTCATGTTTATCAATCACTTGC TAACAAATTTTGATTTTATCTCCAGTCTTATTTTTCGAGATTATCTTATG GCTTAATGTTCTGACAATTTTAGCAAGACTGTCTTGAAGTGGGCCTCATT ACAAACCTTTAAAAAAAAGAGAATATCCCAAGACATATTTGCTCAAAAAT TATCTAAACTCAGAAGAAACTTTCCGAATTCTTTTAAATTCCTAACTTTG AATTAGCAGAGATTTGTTCAACTCCAGGGCCGATTTTTATAACCCAAGGT AATTCTATACACATGCTTTCTTAAATTTTTATAAATTTTGGCTCAGGTCT GACTGTTCTTAATTTTTTGAAATTTTATGAGATGTTGAAATCAGTACTTT TTGGTAATATTATAAAATCTTTGGCTAAAATTGTGTTAATTTGTTCTTAA GTTTGGGCCAATTTTGAGCCTCTTGTTCTTATAAAACTATTATTCAGAAA AAAACTGTTCTTCCTATAAAACTATTCTTATAAAAAAAGCGTGTATTAAG TTAATTGATTTTTGGAACTTCACTACAAAATAAGAACATCCAAACATAAT TGTTCTTCTTTCGTTTTTTAGATCACGGAGATCACGGAAGAGAGTTCGCC AACAAAAGTAAGGAGCTAAAATTCACGAAATGGTCCTTCTCTTACTTTTA CAACGATAGCATTGATAGTGAATTTGCTCAGGCTTTTTGAGATATTCATC ATGTGTTTTAAAAGATATTTTTTAGTAAAATTATACATTACTATCCTCTT TCAAAAAATGACACCACCAATTTTATTAATACATGACCCTCAATATGTCG GTCAAATTTGAAAACACTCAAATCCACAGGAAAAGATATTTTACTAAATT TAGATTCGTGAGAATTTGAAGATTTTGGTACCAGATGCACCACGACAATC CACATGCAAAGGACGTATTCGTTTGAAGATTGTATGGGACCAAAAAGAAA AGGATGAGAAGGTCAGTAATGTAGTAACCCATAGTAACCATACCAAGCAG TCGTACCCGTGTAACATAGTCCTTATATGCTGTTGACGGTGGTTCCTTTT TGTCGCTTTTTGACCTCTTGTTGAGGATCGGCCAAGTAGAGAAGCCTCAA ATTCCGATTTTTTATTCACACAGTTCACTTGGAAACACTTTCCGTCATTA CTTTTGAACCATTTTCAGCTTAAGGGTATTTGGTGATTAACTTATATGCC CTTTTTACACCGGCCCATATTGGTGTTATTTTTGGGCTCGCTGCGTAATA AGGACCGGTGTTAAAAGGGCCAGCGTAAAGGGCTAAGATTTAGCAATTTT TACCTAAAAGCAGCGCTAATTCTTTATCATTATTTCTCAATTTAAAGGAT TTATGGTATGATTCGCAATCGAAAATTATCCATTGTTTTACTCCATATTC AAAACTTCAGTGAAATATTTAATATTTTTAAAATCAGTGATTTTCGATGG AATTTTCAAGTTTACTACTGAAAAATGACATTTTATTTATTATTTATATT ATTTATAATTTGAAGCATAAGTAGCCATTTTTACAATTTTTTTGGCGTAA TTAACAGCCCTAATTGGCGTAAGACCAAAATTAGGCTGTGGCGTAAGGGC TGACGTAAAAGGGACCGGCGTTAAATTGATGTTGCTGTAAATGATTGTTG CCATTAGTATAGTGGACACATGGCCCCCGGCGTGCTAATCGAATTGAGGG GCCAAAAAAATATGTCCATGGTTGGGCGGTGAAGAAAATTTTCGACTTTT CACCCTTATTTCACCCCCTCTAAACGGTATATATAAGATTTTTTAAAGCA AAAAAAAAAACTTTGCAAAATATTGGGGGCCATGGGACAACACTCCTCCA AATCTTCTGTAAGCTTGTACGCAGCTGTTTCTATTACAGTATTTTACAGT ATTACAGTATTATACTATTTTTCACCTGATCCAATTATTTATCCAATTTT CCTGTTCCTCTTTGTTACTGCTCTTGTTCTGTTCGTAGTGGCCCTTTGTG GAAACAATTCTTGAGCTGTCTAAAAGCTCAATGATTTTTGGGAGCCAGCC ACTTAAAACATTCGTTATTATTATTATTAGTATTCCACTTGGCAAATAAT CATTCTAATAATCTCGATTTCTATTTCCACTTATGTAGGCTGGTAAACTA CCAAGTCTTATACCCACCAAACCTCACGAGACAGCTACATCTCAATCATT ACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCACAACGGTTTAACCCAG CTAACATTCGTGACCATTTACCTATTTTAACAACAAATAGTGTCAAACGT GAATTGAAAGCCGATGGAGGTGTTCTTATTGATCCAGATAAACCTCATTC GTTGGATTTCGATGACGCGCCTGGATTAAGATTCAAGGTAAAAATTTAAT ACACACAGCCTCGGCCAAACTCTAACCGAGTCATTTTGCTCGTTTCTAGT AGCGCTCACGATTGCACCACGTCCATCAGTAAAATCAAAAAAGTGATGAA AGTGACTCTGGGTACGAGATTGAGTCTCAGCTATTTTTACTTTTTTCAAG GCTTTTAAATGGGCCTTAAAAGATCCTCTTTTAATGCTTGATAGTATTAA GCAGAGGTAAAGTTCAAAAACTGGTGCAAGACTTTGAGTACTATATATTT ATCTAGTGGCTGTCGGCTGAGCTAGGAATGAAGGATCCTATCCCCTTTTC TATTTGCGCTAGAGCTGGGAAGTTGAATGCTGAGGTGGAGCGCCACACCT ACTCAACTCTATCAGATTACCCAATCGAAGCTACTCATTCACTGAGTTGG CAGTGACCGGGAATCTAACCTACAACCCTTGAATTGTAAGGTAAATGCTC TGTCGACTGACCTACCCGGCCGTTGATGAGTTAAACAGTTTTCTCTTCGT CTTTCTAGGTTACAGGTCTTACAAACCAATACTACAAAGGGATTCAGAAT CAGAAAAGTAGAGAAGCTGAAACACATTGGCATAGTCTCGGCGTCAACCG GATGCCGTCCCAACATTTACGTGAGTCTTATCGACGTGTATTTAAGGCTT ACGTAGATTATCGTAACACCCCTGTATCATCGCTGTGCTCCAGCTCGATT GCATGATATGAAATACTTGTCTTTTTAGTGTGTCTTGAGAATATAAACAA AAATCGTAACTAAGCCACTAACTAATTTTATTTCGTGTTTAAAGTTCCAT TTCATTAAGAATTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036886XLOC_036886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058560-exon-scaffold_311-1575043694:1036328..1036386TCONS_00058560-exon-scaffold_311-1575043694:1036328..1036386Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1033651..1033762TCONS_00058560-exon-scaffold_311-1575043694:1033651..1033762Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1032084..1032309TCONS_00058560-exon-scaffold_311-1575043694:1032084..1032309Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1031430..1031465TCONS_00058560-exon-scaffold_311-1575043694:1031430..1031465Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1031076..1031183TCONS_00058560-exon-scaffold_311-1575043694:1031076..1031183Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1029650..1029898TCONS_00058560-exon-scaffold_311-1575043694:1029650..1029898Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1575043694:1028818..1029128TCONS_00058560-exon-scaffold_311-1575043694:1028818..1029128Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1036328..1036386TCONS_00058560-exon-scaffold_311-1510915933:1036328..1036386Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1033651..1033762TCONS_00058560-exon-scaffold_311-1510915933:1033651..1033762Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1032084..1032309TCONS_00058560-exon-scaffold_311-1510915933:1032084..1032309Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1031430..1031465TCONS_00058560-exon-scaffold_311-1510915933:1031430..1031465Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1031076..1031183TCONS_00058560-exon-scaffold_311-1510915933:1031076..1031183Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1029650..1029898TCONS_00058560-exon-scaffold_311-1510915933:1029650..1029898Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1510915933:1028818..1029128TCONS_00058560-exon-scaffold_311-1510915933:1028818..1029128Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1036328..1036386TCONS_00058560-exon-scaffold_311-1491911889:1036328..1036386Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1033651..1033762TCONS_00058560-exon-scaffold_311-1491911889:1033651..1033762Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1032084..1032309TCONS_00058560-exon-scaffold_311-1491911889:1032084..1032309Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1031430..1031465TCONS_00058560-exon-scaffold_311-1491911889:1031430..1031465Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1031076..1031183TCONS_00058560-exon-scaffold_311-1491911889:1031076..1031183Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1029650..1029898TCONS_00058560-exon-scaffold_311-1491911889:1029650..1029898Clytia hemisphaericaexon
TCONS_00058560-exon-scaffold_311-1491911889:1028818..1029128TCONS_00058560-exon-scaffold_311-1491911889:1028818..1029128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1028818..1036386 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.222484 0.0107372 0 1.72938 1.46181 1.15043 1.11287 0.125509 0.518678 0 0.489652 4.36446 3.77404 0.361258 0.478343 5.83372 9.8081 8.07527 6.83542 3.95105 3.69976 2.00597 3.4613 2.17577 5.92317 0.163382 0 0.374584 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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