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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058560 ID=TCONS_00058560|Name=TCONS_00058560|organism=Clytia hemisphaerica|type=transcript|length=1101bp CgattttgaagaatttcttcaatTGATGACCAACACTGAACGATTTCTGG AAAGTGTCAtcTGCAAAGAACAAGAAGCCGAAGCCACACAGCAACGCGAA GTTTTACTCTTCGAAGCATTGACCCAATTCATGAGAAAATCTGCACTACA TTCAATCAACGAAATTGTCGGCTATTATcatcaaaaatacaagaaagtTC AAACGCCCCATGTGATCCGCCATTATGCAGCAGGCGCCCGTCTGATTGGT TTATCTGAGCAACAAATCAGACGCCACCTTGAACAATTGAGACGTTCATC TATGAGTAATAATAAAAGTCCATACGCTCAACCACCATACGCATTCATGC ATTTATGTAGACAAAAAGAGGTCCCAAGACCTGTTAAACTTGAAAAGATC ACGGAGATCACGGAAGAGAGTTCGCCAACAAAAATTCGTGagaatttgaa gattttggtaCCAGATGCACCACGACAATCCACATGCAAAGGACGTATTC GTTTGAAGATTGTATGGGACCAAAAAGAAAAGGATGAGAAGGCTGGTAAA CTACCAAGTCTTATACCCACCAAACCTCACGAGACAGCTACATCTCAATC ATTACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCACAACGGTTTAACC CAGCTAACATTCGTGACCATTTACCTATTTTAACAACAAATAGTGTCAAA CGTGAATTGAAAGCCGATGGAGGTGTTCTTATTGATCCAGATAAACCTCA TTCGTTGGATTTCGATGACGCGCCTGGATTAAGATTCAAGGTTACAGGTC TTACAAACCAATACTACAAAGGGATTCAGAATCAGAAAAGTAGAGAAGCT GAAACACATTGGCATAGTCTCGGCGTCAACCGGATGCCGTCCCAACATTT ACGTGAGTCTTATCGACGTGTATTTAAGGCTTACGTAGATTATCgtaaca cccctgtatcatcgCTGTGCTCCAGCTCGATTGCATGATATGAAATACTT GTCTTTTTAGTGTGTCTTGAgaatataaacaaaaatcgtaaCTAAGCCAC TAACTAATTTTATTTCGTGTTTAAAGTTCCATTTCATTAAGAATTTACAA G Run BLAST on NCBI transcript from alignment at scaffold_311:1028818..1036386- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058560 ID=TCONS_00058560|Name=TCONS_00058560|organism=Clytia hemisphaerica|type=transcript|length=7569bp|location=Sequence derived from alignment at scaffold_311:1028818..1036386- (Clytia hemisphaerica) CGATTTTGAAGAATTTCTTCAATTGATGACCAACACTGAACGATTTCTGG
AAAGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTTGTTTTTTTTTACT
TGAAGTTTTCATTATACAGTTCATTGAGTTTGAAGCCCCAAAGAGGCTAG
AGATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGGATTTAGCCCATTT
GGGGCTTTGAAATCAACGATACAGTTACAGTCTTCATAAATCGAGAGGTT
TCTTACGAACCTTTTCATTCAAAAAATAATTCTTGAAAATGTAAAGATAA
AATAACTAAATTAGAAAAAAAAACCTTGGAAAATTCTTCTGATGAATTTG
AAGTAGTAGTTGAAAAATAAAGACCACTATGAATTAGTGCTTTTTCGTTT
TTTTAGTCAAAACATACAGAGATTTTGAAGAAAAGCCGTTGTATAATTAT
GATTAGATAGTCTATCCTCGCCCTACAGGCAATTCACTATTGCTTTTTCT
ATTGATGTTTTATTGATTTTTTTTGTAGTCTGCAAAGAACAAGAAGCCGA
AGCCACACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGACCCAATTCA
TGAGAAAATCTGCACTACATTCAATCAACGAAATTGTCGGGTAAGGATCG
AGGCTTGTACGATGATAATAACGCACAAATCTCATTTAAACATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAATGGTTCCTACCCTAAAAATTGATGTTTTTTCAAGTT
TTTATAACCTATGGCACATTTTAAGAGGGTAATCAGCATGATCTGTTCCT
AACATAAATCCCTATCTTTACAATTGATGGATACTTCCTATCTATTAATG
CGAGATATAACCAATAGGAAAGAAACTTTAACGAATTCGAAAGGAAATTC
AATTTACACTCTTTTTTCGAGCTGCTTAAAGCTGAATTTTTAAAATTCAT
TCCCACAAAATTTAGAAATTTTTTCTTGAATTTCTAAAATAAATCCCGCA
AAATCCCTCCAAATACTGCAAAAGTGAGCCCATTCTATTAAGTAAACTTC
TATTATTTAGGTAATGGTATTTTCACGTTTTTTCTTTCTAGCCTTTCGCG
AAGTGTTTGATTTGTTTGACAGTAATGGTGGAGGTTCCATCGATGCGGAT
GAATTGGACGAAGCACTTCGATCAGCTGATATTCAAGTTACCAAAGATGA
AATCAATGAAGTCCTCTCTTCAATGGATAAAGATGGTTTGTGCCTTTTTT
TTGAAACGACGCTTTCTGACTTTATCGTCTTACTGTAGGCTAATGATAGC
GAGTTTATGTATTTGTGTTTTTCAGTGAATGAGACGGTTAGCTTCTGATT
TCTCTAGAACCTGATCAACTGAGGACAACGGTAAACAAGCACTTTTTACC
GTCCTCGATTATTGTTGATCAAAAGTGCGGGTTTATTCAAATCGCCTCTG
TCACTCTGCCGTCCTCAAAAGTGCCAATATATAAACTCTCTAATTCCCGA
TAATCACTTCAGATTCAGATATATAAAAGATGTATATAAGGTTGTGATCA
GATCAGGGAAAAAATCTCTTAAGAGGAATAATTCAAGTTACTTATAAAGC
GTATGCTTTTTCTGCTAGAAATCTGAGACAGATATTTAACTAGCTTCCCT
GGATATTTCTGAACTTCTACTGACTATAGATAAATTCAAAATTATGCCAT
AAATTGCAAGAGAGAAAAACTGTCGAGTGACCAATTCTAATTTGAAGTAT
AGTCTTTTAAATAAATTTTGTAAGCAAAGGTCATCTTGTTCGTAAACATA
TTTTCGTATCCTCAACAAATTTCTCGTTATTAGATAATCTATAAATTTTA
CTAGTTTCATTAAAACTTCTTTATATATAAATCTTTGATAGAAATCATTA
TACCTTTATAATCTTCAAATTATTGTTATTTTTAGGTAATGGAGAAATCG
ATTTTGAAGAATTTCTTCAATTGATGACCAACACTGAACGATTTCTGGAA
AGTGTCAGTAAGTGATACAAGAAATTGTCCAAGTTGTTTTTTTTTACTTG
AAGTTTTCATTATACAGTTCATTGAGTTTGAAGCCCCAAAGAGGCTAGAG
ATGAATCTTCAACCTTTCTCAAGCAAGAGTTTCGGATTCAGCCCATTTGG
GGCTTTGAAATCAACGATACAGTCTTCATAAATCGAGAGGTTTCTTACGG
ACCTTTTCATTCAAAAAATAATTCTTGAAAATGTAAAGATAAAATAACTA
AATTAGAAAAAAAAAACCTTGGAAAATTCTTCTGATGAATTTGAAGTAGT
AGTTGAAAAATAAAGACCACTATGAATTAGTGCTTTTTCGTTTTTAATCA
AAGCATACAGAGATTTGAAGAAAAGCCGTTGTATAATTATGATTAGATAG
TCTATCCTCACCCTACAGGCAATTCACTATTGCTTTTTCTATTGATTTTT
ATTGATTTTTTTTTTTTTTTGTAGTCTGCAAAGAACAAGAAGCCGAAGCC
ACACAGCAACGCGAAGTTTTACTCTTCGAAGCATTGACCCAATTCATGAG
AAAATCTGCACTACATTCAATCAACGAAATTGTCGGGTAAGGATCGAGGC
TTGTACGATGATAATAACGCACAAATCTCATTTAAACATATTTTTGTTAC
AGTGGAGTCTCCATAATTTGAACCTCTATAACTCGAATAAATCCTTAACT
CTAATAACAAGTTTATGTTGCCCGAGTTATAGAGACTCAGAGCTGTATCT
GTAATAGTAGGGCCAACCCTTAGGATTTAGAAGTACAAGACATGCATCAG
TATACATTTTTTACTTGGAATTTCATGCTCCATCCGATTATAGCAAAAAA
AATTTGAATTCGTCTCTTGAATATCGTCAATGTTTTACTGATTTTGGAGG
TGACGAGTTTTGCCTATAACGCCAGTTTTTTACTTATTGATAATTTTGTA
AAGCCTTATTCGCGGGCCCCCTTTCAAAAATATCTCAAAATCTCATCTAC
CTTCGAACCAATTATATGCATGTGTTTCATGAATGATGGATCCATGAACA
TTAGTTAGGTGAAAGGTGAACGTTGAAAGAACGTCTTGTAGATTAGCTCA
TACGAGCTAGATGTATACTTTACATACATTGGTTGTCATACGTGGCAAAA
GCTGAGATAAGTTTATACGTGTTTTCTGACTAGAGGAATCCTCATCTGAT
ATATATTTGAATGATACGCTACACGTTTTTTTTATAAGGACATTCAAAAT
TTTCTTAAAATTGCTTACTTTTTGAGTTTCAAGCCTAAAAATGTTCTTGT
CATGTTCTTATTTTCACCATTTTATTAGTAATTTGGTCCATTTTCCTAAG
AAATTGGATGTTTTCAAGTCCGTGAAGCCTTAAAATGTTATCCTTAAGAT
CTTGTTCTTAATATTTTGACCATCGAAGCCTTATTTTCGAGCTTGTTTTC
TTATAAAGTTTGTTCTTATGAAAAACGTGAAGTGAGACCGGCCGTTTAGC
TTCAAATTTTGAATTTACGCGCTCGATTATTTTCAAAACAATTTTTTTTC
TCCAACATCTCAGACACAGTTCATGTTTGCAACTATTTATCAAATCTTTA
ACAGCTATCAAATAAACATCTATTTTTTATTTTTTCTAAAAAATTTCGGA
TTTCCTCTAATTAATTAGGTTAACAGTGTGACTTTATAGAATCTGTGATA
GAAGTTTTGTTATTTAAAAAAGTAAAGTAAAGAATAATGATATATTGTAT
CTAGTTTTGGGAAATATTTTGCCGAAGAACCATGAGTCCCGCACTCATGG
TTCTTCGAACTTGATTTAGTAGAAGATTGGTTTAGGAAATCCCATGAGGT
TTTTTACTCAACAGATTTTAGAAGAAATCTTAAATTGTTAGCCCTTCTCA
TATATATTATCCACTTTTCTTTTTAAGCTATTATCATCAAAAATACAAGA
AAGTTCAAACGCCCCATGTGATCCGCCATTATGCAGCAGGCGCCCGTCTG
ATTGGTTTATCTGAGCAACAAATCAGACGCCACCTTGAACAATTGAGACG
TTCATCTATGAGTAATAATAAAAGTCCATACGCTCAACCACCATACGCAT
TCATGCATTTATGTAGACAAAAAGAGGTCCCAAGACCTGTTAAACTTGAA
AAGGTAGCTTTTTATTTTAACACACTTTGTCATGTTTATCAATCACTTGC
TAACAAATTTTGATTTTATCTCCAGTCTTATTTTTCGAGATTATCTTATG
GCTTAATGTTCTGACAATTTTAGCAAGACTGTCTTGAAGTGGGCCTCATT
ACAAACCTTTAAAAAAAAGAGAATATCCCAAGACATATTTGCTCAAAAAT
TATCTAAACTCAGAAGAAACTTTCCGAATTCTTTTAAATTCCTAACTTTG
AATTAGCAGAGATTTGTTCAACTCCAGGGCCGATTTTTATAACCCAAGGT
AATTCTATACACATGCTTTCTTAAATTTTTATAAATTTTGGCTCAGGTCT
GACTGTTCTTAATTTTTTGAAATTTTATGAGATGTTGAAATCAGTACTTT
TTGGTAATATTATAAAATCTTTGGCTAAAATTGTGTTAATTTGTTCTTAA
GTTTGGGCCAATTTTGAGCCTCTTGTTCTTATAAAACTATTATTCAGAAA
AAAACTGTTCTTCCTATAAAACTATTCTTATAAAAAAAGCGTGTATTAAG
TTAATTGATTTTTGGAACTTCACTACAAAATAAGAACATCCAAACATAAT
TGTTCTTCTTTCGTTTTTTAGATCACGGAGATCACGGAAGAGAGTTCGCC
AACAAAAGTAAGGAGCTAAAATTCACGAAATGGTCCTTCTCTTACTTTTA
CAACGATAGCATTGATAGTGAATTTGCTCAGGCTTTTTGAGATATTCATC
ATGTGTTTTAAAAGATATTTTTTAGTAAAATTATACATTACTATCCTCTT
TCAAAAAATGACACCACCAATTTTATTAATACATGACCCTCAATATGTCG
GTCAAATTTGAAAACACTCAAATCCACAGGAAAAGATATTTTACTAAATT
TAGATTCGTGAGAATTTGAAGATTTTGGTACCAGATGCACCACGACAATC
CACATGCAAAGGACGTATTCGTTTGAAGATTGTATGGGACCAAAAAGAAA
AGGATGAGAAGGTCAGTAATGTAGTAACCCATAGTAACCATACCAAGCAG
TCGTACCCGTGTAACATAGTCCTTATATGCTGTTGACGGTGGTTCCTTTT
TGTCGCTTTTTGACCTCTTGTTGAGGATCGGCCAAGTAGAGAAGCCTCAA
ATTCCGATTTTTTATTCACACAGTTCACTTGGAAACACTTTCCGTCATTA
CTTTTGAACCATTTTCAGCTTAAGGGTATTTGGTGATTAACTTATATGCC
CTTTTTACACCGGCCCATATTGGTGTTATTTTTGGGCTCGCTGCGTAATA
AGGACCGGTGTTAAAAGGGCCAGCGTAAAGGGCTAAGATTTAGCAATTTT
TACCTAAAAGCAGCGCTAATTCTTTATCATTATTTCTCAATTTAAAGGAT
TTATGGTATGATTCGCAATCGAAAATTATCCATTGTTTTACTCCATATTC
AAAACTTCAGTGAAATATTTAATATTTTTAAAATCAGTGATTTTCGATGG
AATTTTCAAGTTTACTACTGAAAAATGACATTTTATTTATTATTTATATT
ATTTATAATTTGAAGCATAAGTAGCCATTTTTACAATTTTTTTGGCGTAA
TTAACAGCCCTAATTGGCGTAAGACCAAAATTAGGCTGTGGCGTAAGGGC
TGACGTAAAAGGGACCGGCGTTAAATTGATGTTGCTGTAAATGATTGTTG
CCATTAGTATAGTGGACACATGGCCCCCGGCGTGCTAATCGAATTGAGGG
GCCAAAAAAATATGTCCATGGTTGGGCGGTGAAGAAAATTTTCGACTTTT
CACCCTTATTTCACCCCCTCTAAACGGTATATATAAGATTTTTTAAAGCA
AAAAAAAAAACTTTGCAAAATATTGGGGGCCATGGGACAACACTCCTCCA
AATCTTCTGTAAGCTTGTACGCAGCTGTTTCTATTACAGTATTTTACAGT
ATTACAGTATTATACTATTTTTCACCTGATCCAATTATTTATCCAATTTT
CCTGTTCCTCTTTGTTACTGCTCTTGTTCTGTTCGTAGTGGCCCTTTGTG
GAAACAATTCTTGAGCTGTCTAAAAGCTCAATGATTTTTGGGAGCCAGCC
ACTTAAAACATTCGTTATTATTATTATTAGTATTCCACTTGGCAAATAAT
CATTCTAATAATCTCGATTTCTATTTCCACTTATGTAGGCTGGTAAACTA
CCAAGTCTTATACCCACCAAACCTCACGAGACAGCTACATCTCAATCATT
ACGTAAAAAGCGGCGCCATAACGGCTGGGTGGCACAACGGTTTAACCCAG
CTAACATTCGTGACCATTTACCTATTTTAACAACAAATAGTGTCAAACGT
GAATTGAAAGCCGATGGAGGTGTTCTTATTGATCCAGATAAACCTCATTC
GTTGGATTTCGATGACGCGCCTGGATTAAGATTCAAGGTAAAAATTTAAT
ACACACAGCCTCGGCCAAACTCTAACCGAGTCATTTTGCTCGTTTCTAGT
AGCGCTCACGATTGCACCACGTCCATCAGTAAAATCAAAAAAGTGATGAA
AGTGACTCTGGGTACGAGATTGAGTCTCAGCTATTTTTACTTTTTTCAAG
GCTTTTAAATGGGCCTTAAAAGATCCTCTTTTAATGCTTGATAGTATTAA
GCAGAGGTAAAGTTCAAAAACTGGTGCAAGACTTTGAGTACTATATATTT
ATCTAGTGGCTGTCGGCTGAGCTAGGAATGAAGGATCCTATCCCCTTTTC
TATTTGCGCTAGAGCTGGGAAGTTGAATGCTGAGGTGGAGCGCCACACCT
ACTCAACTCTATCAGATTACCCAATCGAAGCTACTCATTCACTGAGTTGG
CAGTGACCGGGAATCTAACCTACAACCCTTGAATTGTAAGGTAAATGCTC
TGTCGACTGACCTACCCGGCCGTTGATGAGTTAAACAGTTTTCTCTTCGT
CTTTCTAGGTTACAGGTCTTACAAACCAATACTACAAAGGGATTCAGAAT
CAGAAAAGTAGAGAAGCTGAAACACATTGGCATAGTCTCGGCGTCAACCG
GATGCCGTCCCAACATTTACGTGAGTCTTATCGACGTGTATTTAAGGCTT
ACGTAGATTATCGTAACACCCCTGTATCATCGCTGTGCTCCAGCTCGATT
GCATGATATGAAATACTTGTCTTTTTAGTGTGTCTTGAGAATATAAACAA
AAATCGTAACTAAGCCACTAACTAATTTTATTTCGTGTTTAAAGTTCCAT
TTCATTAAGAATTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058560-exon-scaffold_311-1575043694:1036328..1036386 | TCONS_00058560-exon-scaffold_311-1575043694:1036328..1036386 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1033651..1033762 | TCONS_00058560-exon-scaffold_311-1575043694:1033651..1033762 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1032084..1032309 | TCONS_00058560-exon-scaffold_311-1575043694:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1031430..1031465 | TCONS_00058560-exon-scaffold_311-1575043694:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1031076..1031183 | TCONS_00058560-exon-scaffold_311-1575043694:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1029650..1029898 | TCONS_00058560-exon-scaffold_311-1575043694:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1575043694:1028818..1029128 | TCONS_00058560-exon-scaffold_311-1575043694:1028818..1029128 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1036328..1036386 | TCONS_00058560-exon-scaffold_311-1510915933:1036328..1036386 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1033651..1033762 | TCONS_00058560-exon-scaffold_311-1510915933:1033651..1033762 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1032084..1032309 | TCONS_00058560-exon-scaffold_311-1510915933:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1031430..1031465 | TCONS_00058560-exon-scaffold_311-1510915933:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1031076..1031183 | TCONS_00058560-exon-scaffold_311-1510915933:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1029650..1029898 | TCONS_00058560-exon-scaffold_311-1510915933:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1510915933:1028818..1029128 | TCONS_00058560-exon-scaffold_311-1510915933:1028818..1029128 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1036328..1036386 | TCONS_00058560-exon-scaffold_311-1491911889:1036328..1036386 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1033651..1033762 | TCONS_00058560-exon-scaffold_311-1491911889:1033651..1033762 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1032084..1032309 | TCONS_00058560-exon-scaffold_311-1491911889:1032084..1032309 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1031430..1031465 | TCONS_00058560-exon-scaffold_311-1491911889:1031430..1031465 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1031076..1031183 | TCONS_00058560-exon-scaffold_311-1491911889:1031076..1031183 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1029650..1029898 | TCONS_00058560-exon-scaffold_311-1491911889:1029650..1029898 | Clytia hemisphaerica | exon |
TCONS_00058560-exon-scaffold_311-1491911889:1028818..1029128 | TCONS_00058560-exon-scaffold_311-1491911889:1028818..1029128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_311 | supercontig | scaffold_311:1028818..1036386 - |
Blast
The following BLAST results are available for this feature:
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