TCONS_00058931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058931
Unique NameTCONS_00058931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=transcript|length=415bp
aactaaacagAGACGAATCTTATGTTTGAAAATAAAGCTATCTTGATACT
TCAAGTGTAAATAAAGCTGACAAAAACGATCCCAAGTGATCAATAAAACA
GCTGAATAAAATGGAATCCTGGATCCTTCAAGCATGATCAACCAGAAAGC
TCGAAGTTCACTACCAACGACATCGGATAACGGATATCgtaaaacattat
tgatagcccATAATAAACACCATATGGAGAAGTGAGCAATAAAAACAGGG
TTGACTCCTGGCACAAGACGGGTCTTCCATAATAAATAGAGACCAGTGCT
ATGCAAAGTGATCGCTGAAATGGCAAGCACTACACTGACGTAATCGAATG
AATCCATGCTGACCATTTTCATACAAATTTGGATTCTGTTTTACATCTGA
TATGGTGTGAAATAA
Run BLAST on NCBI

protein sequence of TCONS_00058931-protein

>TCONS_00058931-protein ID=TCONS_00058931-protein|Name=TCONS_00058931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKMVSMDSFDYVSVVLAISAITLHSTGLYLLWKTRLVPGVNPVFIAHFSI
WCLLWAINNVLRYPLSDVVGSELRAFWLIMLEGSRIPFYSAVLLITWDRF
CQLYLHLKYQDSFIFKHKIRLCLV
Run BLAST on NCBI

transcript from alignment at scaffold_314:504409..504823

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_314:504409..504823 (Clytia hemisphaerica)
TTATTTCACACCATATCAGATGTAAAACAGAATCCAAATTTGTATGAAAA TGGTCAGCATGGATTCATTCGATTACGTCAGTGTAGTGCTTGCCATTTCA GCGATCACTTTGCATAGCACTGGTCTCTATTTATTATGGAAGACCCGTCT TGTGCCAGGAGTCAACCCTGTTTTTATTGCTCACTTCTCCATATGGTGTT TATTATgggctatcaataatgttttacGATATCCGTTATCCGATGTCGTT GGTAGTGAACTTCGAGCTTTCTGGTTGATCATGCTTGAAGGATCCAGGAT TCCATTTTATTCAGCTGTTTTATTGATCACTTGGGATCGTTTTTGTCAGC TTTATTTACACTTGAAGTATCAAGATAGCTTTATTTTCAAACATAAGATT CGTCTctgtttagtt

Coding sequence (CDS) from alignment at scaffold_314:504409..504823

>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_314:504409..504823 (Clytia hemisphaerica)
ATGAAAATGGTCAGCATGGATTCATTCGATTACGTCAGTGTAGTGCTTGC
CATTTCAGCGATCACTTTGCATAGCACTGGTCTCTATTTATTATGGAAGA
CCCGTCTTGTGCCAGGAGTCAACCCTGTTTTTATTGCTCACTTCTCCATA
TGGTGTTTATTATgggctatcaataatgttttacGATATCCGTTATCCGA
TGTCGTTGGTAGTGAACTTCGAGCTTTCTGGTTGATCATGCTTGAAGGAT
CCAGGATTCCATTTTATTCAGCTGTTTTATTGATCACTTGGGATCGTTTT
TGTCAGCTTTATTTACACTTGAAGTATCAAGATAGCTTTATTTTCAAACA
TAAGATTCGTCTctgtttagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037117XLOC_037117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058931-exon-scaffold_314-1491911889:504409..504823TCONS_00058931-exon-scaffold_314-1491911889:504409..504823Clytia hemisphaericaexon
TCONS_00058931-exon-scaffold_314-1510915933:504409..504823TCONS_00058931-exon-scaffold_314-1510915933:504409..504823Clytia hemisphaericaexon
TCONS_00058931-exon-scaffold_314-1575043694:504409..504823TCONS_00058931-exon-scaffold_314-1575043694:504409..504823Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058931-proteinTCONS_00058931-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:504409..504823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.91576 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444 0 0 0.190776 0.696753 0.550584 0.664256 0.414579 0.290256 0 0 0.114699 1.37447 1.1895 0.0977934 0.524736 0.905005 0.795087 0.366152 1.91576 0.166514 0.487318 0.789866 0.179526 1.29435 0 0.236151 0 0.382306 0.779019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400Sequence
Match NameE-valueIdentityDescription
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