TCONS_00058931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058931
Unique NameTCONS_00058931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=transcript|length=415bp
aactaaacagAGACGAATCTTATGTTTGAAAATAAAGCTATCTTGATACT
TCAAGTGTAAATAAAGCTGACAAAAACGATCCCAAGTGATCAATAAAACA
GCTGAATAAAATGGAATCCTGGATCCTTCAAGCATGATCAACCAGAAAGC
TCGAAGTTCACTACCAACGACATCGGATAACGGATATCgtaaaacattat
tgatagcccATAATAAACACCATATGGAGAAGTGAGCAATAAAAACAGGG
TTGACTCCTGGCACAAGACGGGTCTTCCATAATAAATAGAGACCAGTGCT
ATGCAAAGTGATCGCTGAAATGGCAAGCACTACACTGACGTAATCGAATG
AATCCATGCTGACCATTTTCATACAAATTTGGATTCTGTTTTACATCTGA
TATGGTGTGAAATAA
Run BLAST on NCBI

protein sequence of TCONS_00058931-protein

>TCONS_00058931-protein ID=TCONS_00058931-protein|Name=TCONS_00058931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKMVSMDSFDYVSVVLAISAITLHSTGLYLLWKTRLVPGVNPVFIAHFSI
WCLLWAINNVLRYPLSDVVGSELRAFWLIMLEGSRIPFYSAVLLITWDRF
CQLYLHLKYQDSFIFKHKIRLCLV
Run BLAST on NCBI

transcript from alignment at scaffold_314:504409..504823

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_314:504409..504823 (Clytia hemisphaerica)
TTATTTCACACCATATCAGATGTAAAACAGAATCCAAATTTGTATGAAAA
TGGTCAGCATGGATTCATTCGATTACGTCAGTGTAGTGCTTGCCATTTCA
GCGATCACTTTGCATAGCACTGGTCTCTATTTATTATGGAAGACCCGTCT
TGTGCCAGGAGTCAACCCTGTTTTTATTGCTCACTTCTCCATATGGTGTT
TATTATgggctatcaataatgttttacGATATCCGTTATCCGATGTCGTT
GGTAGTGAACTTCGAGCTTTCTGGTTGATCATGCTTGAAGGATCCAGGAT
TCCATTTTATTCAGCTGTTTTATTGATCACTTGGGATCGTTTTTGTCAGC
TTTATTTACACTTGAAGTATCAAGATAGCTTTATTTTCAAACATAAGATT
CGTCTctgtttagtt

Coding sequence (CDS) from alignment at scaffold_314:504409..504823

>TCONS_00058931 ID=TCONS_00058931|Name=TCONS_00058931|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_314:504409..504823 (Clytia hemisphaerica)
ATGAAAATGGTCAGCATGGATTCATTCGATTACGTCAGTGTAGTGCTTGC
CATTTCAGCGATCACTTTGCATAGCACTGGTCTCTATTTATTATGGAAGA
CCCGTCTTGTGCCAGGAGTCAACCCTGTTTTTATTGCTCACTTCTCCATA
TGGTGTTTATTATgggctatcaataatgttttacGATATCCGTTATCCGA
TGTCGTTGGTAGTGAACTTCGAGCTTTCTGGTTGATCATGCTTGAAGGAT
CCAGGATTCCATTTTATTCAGCTGTTTTATTGATCACTTGGGATCGTTTT
TGTCAGCTTTATTTACACTTGAAGTATCAAGATAGCTTTATTTTCAAACA
TAAGATTCGTCTctgtttagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037117XLOC_037117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058931-exon-scaffold_314-1491911889:504409..504823TCONS_00058931-exon-scaffold_314-1491911889:504409..504823Clytia hemisphaericaexon
TCONS_00058931-exon-scaffold_314-1510915933:504409..504823TCONS_00058931-exon-scaffold_314-1510915933:504409..504823Clytia hemisphaericaexon
TCONS_00058931-exon-scaffold_314-1575043694:504409..504823TCONS_00058931-exon-scaffold_314-1575043694:504409..504823Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058931-proteinTCONS_00058931-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:504409..504823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444	0	0	0.190776	0.696753	0.550584	0.664256	0.414579	0.290256	0	0	0.114699	1.37447	1.1895	0.0977934	0.524736	0.905005	0.795087	0.366152	1.91576	0.166514	0.487318	0.789866	0.179526	1.29435	0	0.236151	0	0.382306	0.779019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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