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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058980 ID=TCONS_00058980|Name=TCONS_00058980|organism=Clytia hemisphaerica|type=transcript|length=2159bpRun BLAST on NCBI protein sequence of TCONS_00058980-protein >TCONS_00058980-protein ID=TCONS_00058980-protein|Name=TCONS_00058980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp STVKFIPNMMFQIIAVKLLLLTNILKFAELALIIQDLTDGTAIDHSLSDDRun BLAST on NCBI transcript from alignment at scaffold_315:1323..30712- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058980 ID=TCONS_00058980|Name=TCONS_00058980|organism=Clytia hemisphaerica|type=transcript|length=29390bp|location=Sequence derived from alignment at scaffold_315:1323..30712- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:1323..30712- >TCONS_00058980 ID=TCONS_00058980|Name=TCONS_00058980|organism=Clytia hemisphaerica|type=CDS|length=21417bp|location=Sequence derived from alignment at scaffold_315:1323..30712- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058980 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 2.267e-46 Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 907 TLCPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1446
+ ++GGF+ W++W C+ CG G+ + RSR C P P G C G E C PCPVDG W+ W+ W C+ CG G+Q+RTRTC NP+ +HGG PC G+ E CN PCP+HG W W W C + CG G Q R+R+C++P PA GG+ C G T Q Q+CN CP
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCG---KGI-QKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCP 4698 HSP 2 Score: 173.711 bits (439), Expect = 1.526e-44 Identity = 78/178 (43.82%), Postives = 99/178 (55.62%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1446
CPI+G + W SW+ C+ CG G R+R C++P P Y G C G +S CN+DPCP G W+ W+ W TCS C G R RTC NP P +GG C G ++ Q CNT CP+ G WG W +W++C CG G + R R+CD P P GG C G T+Q CN CP
Sbjct: 4697 CPIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD-TTQVTRCNVQACP 4869 HSP 3 Score: 173.711 bits (439), Expect = 1.650e-44 Identity = 78/178 (43.82%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1446
CP++G +++W+ W C CG N +TR+RTC NP+ + G C G+ E CN PCPV G W+ W W TCS CG G+Q+R R C NP P GG+ C G T+ Q CN CPIHG+W W++W+ C CG G + R+R C DP P +GG C G+ Q CN++ CP
Sbjct: 4583 CPVDGSWSEWSLWEECTRSCGRGN----QTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-DVQSDFCNSDPCP 4755 HSP 4 Score: 172.17 bits (435), Expect = 4.612e-44 Identity = 76/178 (42.70%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 913 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 1446
CP++G ++ W W C+ CG T+TR+R C NP P + G+ C G ++ CN CP+ G W WA+W+ CS+ CG G++ RTR C++P P++GG C G +S CN+ PCP HG W WS W C + C G R R CD+P P++GG C G SQ Q CNT+ CP
Sbjct: 4640 CPVHGAWSAWQPWGTCSESCGKG----TQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCP 4812 The following BLAST results are available for this feature:
BLAST of TCONS_00058980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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