|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059385 ID=TCONS_00059385|Name=TCONS_00059385|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CCCCAATAAGGGATACCCTGATCGAAGGAACAGATAAGTGATCTGAGAGG
TCCCCTCAATAACTAAAGGGTGACCCCAATCGCCTAACTTCCCTTCGTCA
CAATATAAAGATCTAGTTCATNTCGGCCGGCTTAAGGGCGTGATTTCCGA
TTGAAACATGCATATGGTAGATATGAATTATAGTATTATGAATTGTTTAA
ACTGCAGTATTATGGATGAATTATTATGAATTACCGAACTATGAAAAact
tacgaatttttacaaTGCGCATTGAAAGAAATAATAAAGAGACTGAANTC
ATGGTAATTACTCTTACAAGaatatgatttatttatttgttacgATATGC
ACTTGTATTAATAGACCATGGCTGCATTCGAATGCGACCCAAAAGCTTGG
CTATCAACCCAAAGGTGGAGGaaggtgccactctttctccctggactACT
CCACTTACCATTTATCTTTTTCTCTAATACTGAGCATTAAGCAGTGAATA
TCAAGTACAAATGACCCGACCAGGGATTGAACCTACGACCTCGCGCATCG
TAGCCAAGTATTACATTTTTACACTATGGTTTGCTTCAACGTTTTGTTTT
CAGGGTTCGCAATTGACCGTATAGCAAGTTGATTTTTATCGGGCGGAAAA
GTTGGGTCCAAATTAATTATTTCATGTCTAAGGAACTGTATTGTACGGGT
TGTTCGACAATATATCATCCAAGCAGATCTCTGGGAAATTTCTTGTAACg
gactttttttgttttaatgctTAGGTCGTAAAGTGTTGTTTTACCTTGCT
CCTCATTACTAAGTCTTAGCGATTGTGGCGGTCAAAGCTGTTTTGAATGA
CGAATGACGTAACCTTAACGATTGCGATTAAGTCCaacattttctatgtt
tttgtcgagtttttgagtattttaaagcgtgtaatttgttaAAGAGGGTC
AAAACAGgccaaaaataggcaaaaacgGCTTCTTTTTACCCGTTTTTCTC
CTTGCGAGCACCTGGAAACATCTTTCGAAGCTTTTTGTTTTACTACTTCT
TTTGAGTATATTTAACAAGTTTCAAGACATTTCCATGGCTAAGCTAAAAA
GATATGGACTGATGTTACTGACATAAAACGGCTTCTCAATAGTAATTCCT
TACCCAAGCTCTTTTAAGACCCCCTTATTCAAAAGTCCCCTTAAAACGCT
ATTTACCTCTTCATTCCATAAACTAGATGTCGAGGAGCACGAAAATCGTA
TAAAAAGTTACTACCCCTCTAGGTTGGCGCTACCCGCCACTCAGGAGCTA
GTCTAAAAACACTTGGCTTGAAGCTGTAAGGAGATTCGCTGCCATTGAGA
ATAGGAAATACTActacataattcaaaaataattggaCAGTAGGGTTTTT
TCTGATACTCATAACTCTTTATGTGTTTATTTTCATGGCTTCTTGTaagc
aaattttttgtttgtcttgaaattatctttcttttgatatataatacttg
taaatttttttttcggacatatTTTCCGGACATGTCCGGTTTTAAACTGT
CCGAAAAAGTGGTTTCCCCTGTCCGGATTGATGGGGCTTTTTTTGGTAAC
TCAGTATACCCTAAAGaacatctgtgccaattttcagcttgatggcaatt
ttgtccgggttgtggtgaaatttcAACTAATTCTAC Run BLAST on NCBI transcript from alignment at scaffold_326:505448..507133 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059385 ID=TCONS_00059385|Name=TCONS_00059385|organism=Clytia hemisphaerica|type=transcript|length=1686bp|location=Sequence derived from alignment at scaffold_326:505448..507133 (Clytia hemisphaerica)
GTAGAATTAGTTgaaatttcaccacaacccggacaaaattgccatcaagc
tgaaaattggcacagatgttCTTTAGGGTATACTGAGTTACCAAAAAAAG
CCCCATCAATCCGGACAGGGGAAACCACTTTTTCGGACAGTTTAAAACCG
GACATGTCCGGAAAatatgtccgaaaaaaaaatttacaagtattatatat
caaaagaaagataatttcaagacaaacaaaaaatttgcttACAAGAAGCC
ATGAAAATAAACACATAAAGAGTTATGAGTATCAGAAAAAACCCTACTGt
ccaattatttttgaattatgtagTAGTATTTCCTATTCTCAATGGCAGCG
AATCTCCTTACAGCTTCAAGCCAAGTGTTTTTAGACTAGCTCCTGAGTGG
CGGGTAGCGCCAACCTAGAGGGGTAGTAACTTTTTATACGATTTTCGTGC
TCCTCGACATCTAGTTTATGGAATGAAGAGGTAAATAGCGTTTTAAGGGG
ACTTTTGAATAAGGGGGTCTTAAAAGAGCTTGGGTAAGGAATTACTATTG
AGAAGCCGTTTTATGTCAGTAACATCAGTCCATATCTTTTTAGCTTAGCC
ATGGAAATGTCTTGAAACTTGTTAAATATACTCAAAAGAAGTAGTAAAAC
AAAAAGCTTCGAAAGATGTTTCCAGGTGCTCGCAAGGAGAAAAACGGGTA
AAAAGAAGCcgtttttgcctatttttggcCTGTTTTGACCCTCTTtaaca
aattacacgctttaaaatactcaaaaactcgacaaaaacatagaaaatgt
tGGACTTAATCGCAATCGTTAAGGTTACGTCATTCGTCATTCAAAACAGC
TTTGACCGCCACAATCGCTAAGACTTAGTAATGAGGAGCAAGGTAAAACA
ACACTTTACGACCTAagcattaaaacaaaaaaagtccGTTACAAGAAATT
TCCCAGAGATCTGCTTGGATGATATATTGTCGAACAACCCGTACAATACA
GTTCCTTAGACATGAAATAATTAATTTGGACCCAACTTTTCCGCCCGATA
AAAATCAACTTGCTATACGGTCAATTGCGAACCCTGAAAACAAAACGTTG
AAGCAAACCATAGTGTAAAAATGTAATACTTGGCTACGATGCGCGAGGTC
GTAGGTTCAATCCCTGGTCGGGTCATTTGTACTTGATATTCACTGCTTAA
TGCTCAGTATTAGAGAAAAAGATAAATGGTAAGTGGAGTagtccagggag
aaagagtggcaccttCCTCCACCTTTGGGTTGATAGCCAAGCTTTTGGGT
CGCATTCGAATGCAGCCATGGTCTATTAATACAAGTGCATATcgtaacaa
ataaataaatcatattCTTGTAAGAGTAATTACCATGANTTCAGTCTCTT
TATTATTTCTTTCAATGCGCAttgtaaaaattcgtaagtTTTTCATAGTT
CGGTAATTCATAATAATTCATCCATAATACTGCAGTTTAAACAATTCATA
ATACTATAATTCATATCTACCATATGCATGTTTCAATCGGAAATCACGCC
CTTAAGCCGGCCGANATGAACTAGATCTTTATATTGTGACGAAGGGAAGT
TAGGCGATTGGGGTCACCCTTTAGTTATTGAGGGGACCTCTCAGATCACT
TATCTGTTCCTTCGATCAGGGTATCCCTTATTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059385-exon-scaffold_326-1491911889:505448..507133 | TCONS_00059385-exon-scaffold_326-1491911889:505448..507133 | Clytia hemisphaerica | exon |
| TCONS_00059385-exon-scaffold_326-1510915933:505448..507133 | TCONS_00059385-exon-scaffold_326-1510915933:505448..507133 | Clytia hemisphaerica | exon |
| TCONS_00059385-exon-scaffold_326-1575043694:505448..507133 | TCONS_00059385-exon-scaffold_326-1575043694:505448..507133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:505448..507133 . |
Blast
The following BLAST results are available for this feature:
|
