TCONS_00059385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059385
Unique NameTCONS_00059385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059385 ID=TCONS_00059385|Name=TCONS_00059385|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CCCCAATAAGGGATACCCTGATCGAAGGAACAGATAAGTGATCTGAGAGG
TCCCCTCAATAACTAAAGGGTGACCCCAATCGCCTAACTTCCCTTCGTCA
CAATATAAAGATCTAGTTCATNTCGGCCGGCTTAAGGGCGTGATTTCCGA
TTGAAACATGCATATGGTAGATATGAATTATAGTATTATGAATTGTTTAA
ACTGCAGTATTATGGATGAATTATTATGAATTACCGAACTATGAAAAact
tacgaatttttacaaTGCGCATTGAAAGAAATAATAAAGAGACTGAANTC
ATGGTAATTACTCTTACAAGaatatgatttatttatttgttacgATATGC
ACTTGTATTAATAGACCATGGCTGCATTCGAATGCGACCCAAAAGCTTGG
CTATCAACCCAAAGGTGGAGGaaggtgccactctttctccctggactACT
CCACTTACCATTTATCTTTTTCTCTAATACTGAGCATTAAGCAGTGAATA
TCAAGTACAAATGACCCGACCAGGGATTGAACCTACGACCTCGCGCATCG
TAGCCAAGTATTACATTTTTACACTATGGTTTGCTTCAACGTTTTGTTTT
CAGGGTTCGCAATTGACCGTATAGCAAGTTGATTTTTATCGGGCGGAAAA
GTTGGGTCCAAATTAATTATTTCATGTCTAAGGAACTGTATTGTACGGGT
TGTTCGACAATATATCATCCAAGCAGATCTCTGGGAAATTTCTTGTAACg
gactttttttgttttaatgctTAGGTCGTAAAGTGTTGTTTTACCTTGCT
CCTCATTACTAAGTCTTAGCGATTGTGGCGGTCAAAGCTGTTTTGAATGA
CGAATGACGTAACCTTAACGATTGCGATTAAGTCCaacattttctatgtt
tttgtcgagtttttgagtattttaaagcgtgtaatttgttaAAGAGGGTC
AAAACAGgccaaaaataggcaaaaacgGCTTCTTTTTACCCGTTTTTCTC
CTTGCGAGCACCTGGAAACATCTTTCGAAGCTTTTTGTTTTACTACTTCT
TTTGAGTATATTTAACAAGTTTCAAGACATTTCCATGGCTAAGCTAAAAA
GATATGGACTGATGTTACTGACATAAAACGGCTTCTCAATAGTAATTCCT
TACCCAAGCTCTTTTAAGACCCCCTTATTCAAAAGTCCCCTTAAAACGCT
ATTTACCTCTTCATTCCATAAACTAGATGTCGAGGAGCACGAAAATCGTA
TAAAAAGTTACTACCCCTCTAGGTTGGCGCTACCCGCCACTCAGGAGCTA
GTCTAAAAACACTTGGCTTGAAGCTGTAAGGAGATTCGCTGCCATTGAGA
ATAGGAAATACTActacataattcaaaaataattggaCAGTAGGGTTTTT
TCTGATACTCATAACTCTTTATGTGTTTATTTTCATGGCTTCTTGTaagc
aaattttttgtttgtcttgaaattatctttcttttgatatataatacttg
taaatttttttttcggacatatTTTCCGGACATGTCCGGTTTTAAACTGT
CCGAAAAAGTGGTTTCCCCTGTCCGGATTGATGGGGCTTTTTTTGGTAAC
TCAGTATACCCTAAAGaacatctgtgccaattttcagcttgatggcaatt
ttgtccgggttgtggtgaaatttcAACTAATTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_326:505448..507133

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059385 ID=TCONS_00059385|Name=TCONS_00059385|organism=Clytia hemisphaerica|type=transcript|length=1686bp|location=Sequence derived from alignment at scaffold_326:505448..507133 (Clytia hemisphaerica)
GTAGAATTAGTTgaaatttcaccacaacccggacaaaattgccatcaagc tgaaaattggcacagatgttCTTTAGGGTATACTGAGTTACCAAAAAAAG CCCCATCAATCCGGACAGGGGAAACCACTTTTTCGGACAGTTTAAAACCG GACATGTCCGGAAAatatgtccgaaaaaaaaatttacaagtattatatat caaaagaaagataatttcaagacaaacaaaaaatttgcttACAAGAAGCC ATGAAAATAAACACATAAAGAGTTATGAGTATCAGAAAAAACCCTACTGt ccaattatttttgaattatgtagTAGTATTTCCTATTCTCAATGGCAGCG AATCTCCTTACAGCTTCAAGCCAAGTGTTTTTAGACTAGCTCCTGAGTGG CGGGTAGCGCCAACCTAGAGGGGTAGTAACTTTTTATACGATTTTCGTGC TCCTCGACATCTAGTTTATGGAATGAAGAGGTAAATAGCGTTTTAAGGGG ACTTTTGAATAAGGGGGTCTTAAAAGAGCTTGGGTAAGGAATTACTATTG AGAAGCCGTTTTATGTCAGTAACATCAGTCCATATCTTTTTAGCTTAGCC ATGGAAATGTCTTGAAACTTGTTAAATATACTCAAAAGAAGTAGTAAAAC AAAAAGCTTCGAAAGATGTTTCCAGGTGCTCGCAAGGAGAAAAACGGGTA AAAAGAAGCcgtttttgcctatttttggcCTGTTTTGACCCTCTTtaaca aattacacgctttaaaatactcaaaaactcgacaaaaacatagaaaatgt tGGACTTAATCGCAATCGTTAAGGTTACGTCATTCGTCATTCAAAACAGC TTTGACCGCCACAATCGCTAAGACTTAGTAATGAGGAGCAAGGTAAAACA ACACTTTACGACCTAagcattaaaacaaaaaaagtccGTTACAAGAAATT TCCCAGAGATCTGCTTGGATGATATATTGTCGAACAACCCGTACAATACA GTTCCTTAGACATGAAATAATTAATTTGGACCCAACTTTTCCGCCCGATA AAAATCAACTTGCTATACGGTCAATTGCGAACCCTGAAAACAAAACGTTG AAGCAAACCATAGTGTAAAAATGTAATACTTGGCTACGATGCGCGAGGTC GTAGGTTCAATCCCTGGTCGGGTCATTTGTACTTGATATTCACTGCTTAA TGCTCAGTATTAGAGAAAAAGATAAATGGTAAGTGGAGTagtccagggag aaagagtggcaccttCCTCCACCTTTGGGTTGATAGCCAAGCTTTTGGGT CGCATTCGAATGCAGCCATGGTCTATTAATACAAGTGCATATcgtaacaa ataaataaatcatattCTTGTAAGAGTAATTACCATGANTTCAGTCTCTT TATTATTTCTTTCAATGCGCAttgtaaaaattcgtaagtTTTTCATAGTT CGGTAATTCATAATAATTCATCCATAATACTGCAGTTTAAACAATTCATA ATACTATAATTCATATCTACCATATGCATGTTTCAATCGGAAATCACGCC CTTAAGCCGGCCGANATGAACTAGATCTTTATATTGTGACGAAGGGAAGT TAGGCGATTGGGGTCACCCTTTAGTTATTGAGGGGACCTCTCAGATCACT TATCTGTTCCTTCGATCAGGGTATCCCTTATTGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037390XLOC_037390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059385-exon-scaffold_326-1491911889:505448..507133TCONS_00059385-exon-scaffold_326-1491911889:505448..507133Clytia hemisphaericaexon
TCONS_00059385-exon-scaffold_326-1510915933:505448..507133TCONS_00059385-exon-scaffold_326-1510915933:505448..507133Clytia hemisphaericaexon
TCONS_00059385-exon-scaffold_326-1575043694:505448..507133TCONS_00059385-exon-scaffold_326-1575043694:505448..507133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:505448..507133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.0727546 tpm) - - (1.5555 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190582 0.216582 0.0727546 0.4186 1.26804 1.12015 0.992648 1.49064 0.978667 1.1361 0.719146 0.758399 0.577395 1.5555 0.183578 0.272971 0.118325 0.163456 0.327125 0.311258 0.433536 0.492616 0.300627 0.195779 0.880562 1.31465 0.307074 0.259236 0.0875319 0.193987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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