|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059509 ID=TCONS_00059509|Name=TCONS_00059509|organism=Clytia hemisphaerica|type=transcript|length=2918bpRun BLAST on NCBI protein sequence of TCONS_00059509-protein >TCONS_00059509-protein ID=TCONS_00059509-protein|Name=TCONS_00059509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MYPATHQCAPGAWEKEKVKTLLKKFEFPRESAEELISKMNEDFSYGLKNGRun BLAST on NCBI transcript from alignment at scaffold_329:275845..294494+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059509 ID=TCONS_00059509|Name=TCONS_00059509|organism=Clytia hemisphaerica|type=transcript|length=18650bp|location=Sequence derived from alignment at scaffold_329:275845..294494+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:275845..294494+ >TCONS_00059509 ID=TCONS_00059509|Name=TCONS_00059509|organism=Clytia hemisphaerica|type=CDS|length=9702bp|location=Sequence derived from alignment at scaffold_329:275845..294494+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059509 vs. Swiss-Prot (Human)
Match: HKDC1 (Putative hexokinase HKDC1 OS=Homo sapiens GN=HKDC1 PE=1 SV=3) HSP 1 Score: 335.495 bits (859), Expect = 3.270e-99 Identity = 197/440 (44.77%), Postives = 276/440 (62.73%), Query Frame = 1
Query: 376 EKEKVKTLLKKFEFPRESAEELISKMNEDFSYGLKNGGDYHSPVKMLLTYVHGLPDGTETGDYFALDLGGTNFRVLLVKLHDG--NVSMSHETFPISQETMKGDADGLFGYIAECLAKFAKLKLGQETRKLGTVGFTFSFPVRQESLTCGSLIKWTKGFXXXXXXXXXXXALLQQAIEKRNEIEVEQIALLNDTTGVMMSCAYNDPDVMVGMILGTGSNACYMEKLEYVGKWFHPQSPYKECIINTEWGAYGDMDELQSVSTSYDKIVDEESLYPGKQLFEKMISGMYLGEIVRQCILSLIKDFVLFRGYISPQLGKKDSFTTIYVSEFCSGD--AMKCVNILHQLGYEAATIEDCHVMQDICIAVSXXXXXXXXXGLTCILRR------LKRSSVSVAMDGSLYKKHPTFKRFMHQALEEFLPTTQVNLRLAEDGSGRG 1665
+++++ +L F+ RE ++ +KM + YGLK + V+ML TYV GLPDGTE G + ALDLGGTNFRVLLVK+ G +V M ++ F I E M+G + LF +I +C+A F +G + L +GFTFSFP RQ S+ G+LI WTKGF D E DVV +L++AI++RNE +++ +A++NDT G MM+C Y DP+ +G+I GTGSN CYME + + K C INTEWG +GD + + T YD VDE SL PGKQ +EKM SGMYLGEIVRQ ++ L K +LFRG IS +L + F T ++S+ S ++ IL QLG + +T ED V++++C AVS RAA+L AGL I+ + L+ ++V +DG+LYK HP F R + + ++E P V L+EDGSG+G
Sbjct: 466 QRKQIDRVLALFQLTREQLVDVQAKMRAELEYGLKKKSHGLATVRMLPTYVCGLPDGTEKGKFLALDLGGTNFRVLLVKIRSGRRSVRMYNKIFAIPLEIMQGTGEELFDHIVQCIADFLDY-MGLKGASL-PLGFTFSFPCRQMSIDKGTLIGWTKGFKATDCEGEDVVDMLREAIKRRNEFDLDIVAVVNDTVGTMMTCGYEDPNCEIGLIAGTGSNMCYMEDMRNI--EMVEGGEGKMC-INTEWGGFGDNGCIDDIWTRYDTEVDEGSLNPGKQRYEKMTSGMYLGEIVRQILIDLTKQGLLFRGQISERLRTRGIFETKFLSQIESDRLALLQVRRILQQLGLD-STCEDSIVVKEVCGAVSRRAAQLCGAGLAAIVEKRREDQGLEHLRITVGVDGTLYKLHPHFSRILQETVKELAPRCDVTFMLSEDGSGKG 899 HSP 2 Score: 274.633 bits (701), Expect = 1.240e-77 Identity = 173/440 (39.32%), Postives = 259/440 (58.86%), Query Frame = 1
Query: 382 EKVKTLLKKFEFPRESAEELISKMNEDFSYGLKNGGDYHSPVKMLLTYVHGLPDGTETGDYFALDLGGTNFRVLLVKLHD---GNVSMSHETFPISQETMKGDADGLFGYIAECLAKFAKLKLGQETRKLGTVGFTFSFPVRQESLTCGSLIKWTKGFXXXXXXXXXXXALLQQAIEKRNEIEVEQIALLNDTTGVMMSCAYNDPDVMVGMILGTGSNACYMEKLEYVGKWFHPQSPYKECIINTEWGAYGDMDELQSVSTSYDKIVDEESLYPGKQLFEKMISGMYLGEIVRQCILSLIKDFVLFRGYISPQLGKKDSFTTIYVS---EFCSGDAMKCVNILHQLGYEAATIEDCHVMQDICIAVSXXXXXXXXXGLTCIL------RRLKRSSVSVAMDGSLYKKHPTFKRFMHQALEEFLPTTQVNLRLAEDGSGRG 1665
+KV L ++ +++ + + GL + + VKML T+V +PDG+E G++ +LDLGG+ FRVL V++ + +V M + +P E ++G+ LF Y+A+CLA F K K + +KL +G TFSFP RQ L G L+ WTK F V+D DVV+ L +A+ + +++V+ +AL+NDT G MM+CAY+DP VG+I+GTG+NACYME + + + INTEWGA+GD L+ + T +D+ +D SL PGKQLFEKMISG+YLGE+VR +L + K +LF G S L K T +V+ ++ G A IL LG E + DC +Q +C VS R+A L AA L IL ++++R +V MDG+LYK HP + + +H+ + + +P+ V L+E GS +G
Sbjct: 20 KKVDRFLYHMRLSDDTLLDIMRRFRAEMEKGLAKDTNPTAAVKMLPTFVRAIPDGSENGEFLSLDLGGSKFRVLKVQVAEEGKRHVQMESQFYPTPNEIIRGNGTELFEYVADCLADFMKTK-DLKHKKL-PLGLTFSFPCRQTKLEEGVLLSWTKKFKARGVQDTDVVSRLTKAMRRHKDMDVDILALVNDTVGTMMTCAYDDPYCEVGVIIGTGTNACYMEDMSNID---LVEGDEGRMCINTEWGAFGDDGALEDIRTEFDRELDLGSLNPGKQLFEKMISGLYLGELVRLILLKMAKAGLLFGGEKSSALHTKGKIETRHVAAMEKYKEGLA-NTREILVDLGLEPSE-ADCIAVQHVCTIVSFRSANLCAAALAAILTRLRENKKVERLRTTVGMDGTLYKIHPQYPKRLHKVVRKLVPSCDVRFLLSESGSTKG 452 The following BLAST results are available for this feature:
BLAST of TCONS_00059509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.