TCONS_00063103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063103
Unique NameTCONS_00063103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1052

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063103 ID=TCONS_00063103|Name=TCONS_00063103|organism=Clytia hemisphaerica|type=transcript|length=1052bp
GGGAATTAAAAGAGGCGGATATTAAATATTATGAAATGAGAAAAGAGTTT
TAACTTAACCAGCCAGATGCACACATGGACATAACTTAACCTAATCCGTA
TAAAACCCAAGGTAGGTTCCttccaaaataatcaaacacAAATCTTCATA
AAGTAGAACGAAGACTTGTAGACCTTGAAGAAGAAGATATGGATTCATCA
TATTTGTTACTGACTGGCTGTTTGTTGGCTTTTATGCAGTTTACTTCCTC
CGCAAGCCTACATACAAACAATGGTGTTGTGAACATGGAAAATTTCGAGC
TTCAAGATAGTATCAGCGATGAATCCAATCTCGAAACTCGACGAGATTCG
TCTTTGGCAGACTCAAGTGTAAAAGAAGATCACCACCCTATCTCTACTAA
AATGTTTTTCAAGCAGCGCTACGTCAAATGTAAACGCACCTATAATGGCC
GTCGAATATGTCGTCGATGTACACCGACATGTTATCGATCATGCCGTGAT
GACGGAGTTTGTGGAAAACCATACTGTCGTGATAGATGTGTAGTGATCAA
AGGATAGATTTATATATTTACTTAAATGTTTTAGGATCTTTTGTGAATTT
GTATCATATACTGTTTTGTGTAAATTTACCGTCCAAGTTACAGCCACTGT
CCacataacacccctgtctcagtgccccggtagaactttttccctcagtg
tagactagtaaaccacgtcgttgtatttcgctgcagattaaacttgcaat
gggatctatttctatatatgttcactgaatacatgtctttccaatccact
ctcccgcggcaatttctattttttataagaactctttattataagcacta
ttcccgcgttgcTGTGTCCAacgaaagacagacgcttgctagtctaccct
cagtggggatgaaaatttctatcaaaatgccaatgggcatagaaaatcta
ttgtttccagctcgaaaattccagtggggatggttttggagtgcaatttt
ttacattcagttttcaatggagataaaatcatagagcaatttcgcagtgg
gg
Run BLAST on NCBI

protein sequence of TCONS_00063103-protein

>TCONS_00063103-protein ID=TCONS_00063103-protein|Name=TCONS_00063103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MDSSYLLLTGCLLAFMQFTSSASLHTNNGVVNMENFELQDSISDESNLET
RRDSSLADSSVKEDHHPISTKMFFKQRYVKCKRTYNGRRICRRCTPTCYR
SCRDDGVCGKPYCRDRCVVIKG
Run BLAST on NCBI

transcript from alignment at scaffold_38:120960..123310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063103 ID=TCONS_00063103|Name=TCONS_00063103|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at scaffold_38:120960..123310- (Clytia hemisphaerica)
GGGAATTAAAAGAGGCGGATATTAAATATTATGAAATGAGAAAAGAGTTT
TAACTTAACCAGCCAGATGCACACATGGACATAACTTAACCTAATCCGTA
TAAAACCCAAGGTAGGTTCCTTCCAAAATAATCAAACACAAATCTTCATA
AAGTAGAACGAAGACTTGTAGACCTTGAAGAAGAAGATATGGATTCATCA
TATTTGTTACTGACTGGCTGTTTGTTGGCTTTTATGCAGTGTAAGCATTT
TTATTGATCTTAATTTGTTATTATGTGTATTCTCATTATTAGCTTTGTTC
AGGCCCGGTGGAACCGGGGAGACTGGGGAGACTTCAGCCTCCCCACTTTT
GAGCAAATGAGATTTTCTTTCTCAAATTCCTAGCAGTTTTTAACTCATTT
TGAGCTTTCACCCTCCCCACTTTTATGATTGTTCTGCCGGGCCTGTCGTT
GGGGGTGTCTATCTTAGGTAGAGCCTGTGCCCTGTGATAATATAATGCTT
ATGTATGTCTGCCTTTCGTTTTCCATTCTCAATCAAACAAGAAATCTAAA
AATCCAATAAACTACGTCTTGCCAAAGTTATCAAAGTTTTCTTTCTATAT
TCCATTTTCAGCTAATGTGAATGCTTTTGATGATTTTTGAACACGTCTTG
TGCTTTTAGTTACTTCCTCCGCAAGCCTACATACAAACAATGGTGTTGTG
AACATGGAAAATTTCGAGCTTCAAGATAGTATCAGCGATGAATCCAATCT
CGAAACTCGACGAGGTATACGACCAGCAAATTTTAGCTGTTGTTAATTTA
TTACAAAACTTTTTTGTTTTTACGAGTTTTGATCGGTTTTAAGTTGTAAC
TTTTCGTAATTAATCACCCATTTACTTTACAAAGGGCTTATGATGCGTTT
AGCTTAACCTGTTACGGCAGGTGCGACGCCGAGTCACGGCTAGTTTATTA
CTGACAACAAATTCTTTAGCAACTTTTGGAACGATACAAAACGGTCTACG
GTCGTTATAATCTTGCCAAGACTTATCCGTTCTTTTAATTCGAGTTTGTA
TACAAGCTGGTAAATCAAAAATCCAAATTTTTCATCTGGGCCCTTGTATT
AGTTTATTTAAAATACAAAAGACTAGGCTGCTGGCATCCACTAACGGATT
CGTGCTCCTTTTAGTACCTATATTATACTACCGTGGGGTTTTGTAGACGT
CTGCGATTCAGATTAACAAAAGGCTGAATTAGTGGCTAAACGCAAATTTC
ACAGATCTGGGCATTCTTCAATTGGGCTATTCCAGAAATAGTCTGTACCC
CCTATGTTGAGGAAGTGTGACGTCCAGGGTGGTCTGGAAAATAAAAAATC
CAGGGTGGTCTAGTTTTTTGGATGTAAAAGTCCGGGGTGGTCAGTAAAAT
GAGGTTGAAAATCCAGGGTGTTCAGTAAAACGAGGACAATAATCTAGGGA
GTCCTGAAAAATTGAAAATAAAAATCCAGGGGGTCACCTTTTTAAAAAAA
GACCTCCTCAACATAGGGTATACAATTCTTTTCTGGAATAGCCCATTTGG
GAGGAGTGGTTGGTCATCAATTATCCCAAAAAGGAATGGAATGTCTTAAT
GAGCTTATGTAAATAACCATGAATAACGATTATTTTTTTGACAGATTCGT
CTTTGGCAGACTCAAGTGTAAAAGAAGATCACCACCCTATCTCTACTAAA
ATGTTTTTCAAGCAGCGCTACGTCAAATGTAAACGCACCTATAATGGCCG
TCGAATATGTCGTCGATGTACACCGACATGTTATCGATCATGCCGTGATG
ACGGAGTTTGTGGAAAACCATACTGTCGTGATAGATGTGTAGTGATCAAA
GGATAGATTTATATATTTACTTAAATGTTTTAGGATCTTTTGTGAATTTG
TATCATATACTGTTTTGTGTAAATTTACCGTCCAAGTTACAGCCACTGTC
CACATAACACCCCTGTCTCAGTGCCCCGGTAGAACTTTTTCCCTCAGTGT
AGACTAGTAAACCACGTCGTTGTATTTCGCTGCAGATTAAACTTGCAATG
GGATCTATTTCTATATATGTTCACTGAATACATGTCTTTCCAATCCACTC
TCCCGCGGCAATTTCTATTTTTTATAAGAACTCTTTATTATAAGCACTAT
TCCCGCGTTGCTGTGTCCAACGAAAGACAGACGCTTGCTAGTCTACCCTC
AGTGGGGATGAAAATTTCTATCAAAATGCCAATGGGCATAGAAAATCTAT
TGTTTCCAGCTCGAAAATTCCAGTGGGGATGGTTTTGGAGTGCAATTTTT
TACATTCAGTTTTCAATGGAGATAAAATCATAGAGCAATTTCGCAGTGGG
G

Coding sequence (CDS) from alignment at scaffold_38:120960..123310-

>TCONS_00063103 ID=TCONS_00063103|Name=TCONS_00063103|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_38:120960..123310- (Clytia hemisphaerica)
ATTCGTCTTTGGCAGACTCAAGTGTAAAAGAAGATCACCACCCTATCTCT
ACTAAAATGTTTTTCAAGCAGCGCTACGTCAAATGTAAACGCACCTATAA
TGGCCGTCGAATATGTCGTCGATGTACACCGACATGTTATCGATCATGCC
GTGATGACGGAGTTTGTGGAAAACCATACTGTCGTGATAGATGTGTAGTG
ATCAAAGGATAGTTACTTCCTCCGCAAGCCTACATACAAACAATGGTGTT
GTGAACATGGAAAATTTCGAGCTTCAAGATAGTATCAGCGATGAATCCAA
TCTCGAAACTCGACGAGATGGATTCATCATATTTGTTACTGACTGGCTGT
TTGTTGGCTTTTATGCAGTATTCGTCTTTGGCAGACTCAAGTGTAAAAGA
AGATCACCACCCTATCTCTACTAAAATGTTTTTCAAGCAGCGCTACGTCA
AATGTAAACGCACCTATAATGGCCGTCGAATATGTCGTCGATGTACACCG
ACATGTTATCGATCATGCCGTGATGACGGAGTTTGTGGAAAACCATACTG
TCGTGATAGATGTGTAGTGATCAAAGGATAGTTACTTCCTCCGCAAGCCT
ACATACAAACAATGGTGTTGTGAACATGGAAAATTTCGAGCTTCAAGATA
GTATCAGCGATGAATCCAATCTCGAAACTCGACGAGATGGATTCATCATA
TTTGTTACTGACTGGCTGTTTGTTGGCTTTTATGCAGTATTCGTCTTTGG
CAGACTCAAGTGTAAAAGAAGATCACCACCCTATCTCTACTAAAATGTTT
TTCAAGCAGCGCTACGTCAAATGTAAACGCACCTATAATGGCCGTCGAAT
ATGTCGTCGATGTACACCGACATGTTATCGATCATGCCGTGATGACGGAG
TTTGTGGAAAACCATACTGTCGTGATAGATGTGTAGTGATCAAAGGATAG
TTACTTCCTCCGCAAGCCTACATACAAACAATGGTGTTGTGAACATGGAA
AATTTCGAGCTTCAAGATAGTATCAGCGATGAATCCAATCTCGAAACTCG
ACGAGATGGATTCATCATATTTGTTACTGACTGGCTGTTTGTTGGCTTTT
ATGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039524XLOC_039524Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063103-proteinTCONS_00063103-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063103-exon-scaffold_38-1575043694:123071..123310TCONS_00063103-exon-scaffold_38-1575043694:123071..123310Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1575043694:122547..122651TCONS_00063103-exon-scaffold_38-1575043694:122547..122651Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1575043694:120960..121666TCONS_00063103-exon-scaffold_38-1575043694:120960..121666Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1510915933:123071..123310TCONS_00063103-exon-scaffold_38-1510915933:123071..123310Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1510915933:122547..122651TCONS_00063103-exon-scaffold_38-1510915933:122547..122651Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1510915933:120960..121666TCONS_00063103-exon-scaffold_38-1510915933:120960..121666Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1491911889:123071..123310TCONS_00063103-exon-scaffold_38-1491911889:123071..123310Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1491911889:122547..122651TCONS_00063103-exon-scaffold_38-1491911889:122547..122651Clytia hemisphaericaexon
TCONS_00063103-exon-scaffold_38-1491911889:120960..121666TCONS_00063103-exon-scaffold_38-1491911889:120960..121666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:120960..123310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.420844	0.243112	0.586401	0.592297	0.500072	0.172804	1.1013	1.54669	2.00685	2.36825	3.52328	1.93373	16.6238	15.7772	18.3572	14.3135	9.68972	10.1489	0.421972	0.707477	1.90075	1.96923	0.851808	1.06551	2.75977	1.90248	0.577868	0.0682244	0.235038	0.0861276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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