TCONS_00061574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061574
Unique NameTCONS_00061574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061574 ID=TCONS_00061574|Name=TCONS_00061574|organism=Clytia hemisphaerica|type=transcript|length=1146bp
tatatttttagatagtataaataaaaataatttatgtgATGTTGTCCCTA
ATATCAATTAGAAACTTGCAAAAAAGTAATACTTGGAGCCGAGCTTTTTC
TCAGTTGATGCCAGTGTCTACAGCTGTTTTGCAACACCAAAATGCAGAAG
GAAAGACAATTATGCAAAACATATCTGAAATATGGAGTGGTTTCTTACTT
GCTGTACCAAAGAAAAGACGGTCAATTGCTAAAAGAAGATGGCTGAGAAA
ATTTAAAGCCTTAAAGCCAAGAGATGATATTGAGGACTGTGTTGTTTGCG
GTGGTAAAAAACTACGTGGAAAACTTTGCCATCATTGTTATCAATGGACA
ATGTCCTTAACAGAAAAAGTCtggcaaaaacaaaaagatgaagACATGAA
CGAGAAAACTCAACATGGTTTAAGGAATTACCTCCAAAAATTTAAGgaaa
ttgactttgaagaAGTTAAATCTATTGAATTGATTGTTGGCAATGAATCA
GCAGATCTTGATAGCATTGTTTGTCCTCTTGTTTTGGCGTATTACCGATC
ATGCAAAATTAATATTCAGaTTGATGAATCAAATTCAATATGTTTACCTG
TTGTTTGGTGCCACAAAGATGACGTCGAATTAACCACTGAAGCAGTTGCA
TTATTCAAGGACACCTGCTTGCCTATAAAAGATCTGTTATTCCAAAATGA
TTGGGAAGCTTTAAAGGAAAAGTTTTCACACAAGGATTTGAAGGTGACTT
TAGTTGATCATAATCACGCAAGGGAGCACCCTGACTTAAATgaatttgtt
gttgaaattattGATCATCGCATTGATACAAATGACTTCATAAACATATC
CAAGAAGATTCAACTCTTGGGTTCCTGTTCCTCaataatcgcacaatggc
ttcaTCAAACAGATAGTGAATTTCTCGTCAATTCACCTGATGTCTGCAAA
ATGCTTTTGGCAACTATCTTGGTTGACACTTATAACTTGGATTTACACAG
CGGTAGAACAACTGAACAAGATATTTTCATTGCTGAGCTTTTGTCAAGCT
ATATAGAAGATGTTGATACCGATGAACTGTTCACAAAACGTCAAAAAGGT
TTGTCAGTTGATTTGACTCATTAGGACTGCACTATTTTACTTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_36:670904..673549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061574 ID=TCONS_00061574|Name=TCONS_00061574|organism=Clytia hemisphaerica|type=transcript|length=2646bp|location=Sequence derived from alignment at scaffold_36:670904..673549+ (Clytia hemisphaerica)
tatatttttagatagtataaataaaaataatttatgtgATGTTGTCCCTA
ATATCAATTAGAAACTTGCAAAAAAGTAATACTTGGAGCCGAGCTTTTTC
TCAGTTGATGCCAGTGTCTACAGCTGTTTTGCAACACCAAAATGCAGAAG
GAAAGACAATTATGCAAAACATATCTGAAATATGGAGTGGTTTCTTACTT
GCTGTACCAAAGAAAAGACGGTCAATTGCTAAAAGAAGATGGCTGAGAAA
ATTTAAAGCCTTAAAGCCAAGAGATGATATTGAGGACTGTGTTGTTTGCG
GTGGTAAAAAACTACGTGGAAAACTTTGCCATCATTGTTATCAATGGACA
ATGTCCTTAACAGAAAAAGTCtggcaaaaacaaaaagatgaagGTACACT
TAGGAAGGATCGATTtgtcaaataataaaaaaatcgatTTGAATATTGAT
TAAATTTTAGAACATGTTTTTATATTGTGACTGTGTATTTCTATGTATAA
TTTTGTGAGAAACATATATATAAAGTGTCCAAATCAATTTATCTTTTATC
AATTCCTTGATGGGTTCTGTGAAACTTTGAGAAGTCCTTTCTATGTGTTT
TACTTTGTCTTATTATATATTATGATTCCTTTTAAATCTCCGAATTCATG
TTTTCTGGGCATAGTTTTTAGTGATGCTGCCACCTCATTCTCATGTGATA
TCAGGTGTTCTGTTAAAGAGAATCCAAATCATATTGGTAAAAAGTCTTCT
TACAAttgcaacattttttgaatgcaaaattattactttttattctttaa
cTTTACAATATGGAAGACATGAACGAGAAAACTCAACATGGTTTAAGGAA
TTACCTCCAAAAATTTAAGGTGAGACAATTTTTATTGCAAACCAAAGAAA
GTGAGAAGATTATTgtccaaatagaaaaaaactttaattagTTCCCATGT
TGGTAAAGATCAGCTCCCACAAAAAGTTACTTTATTTACTATGAGGTAAT
GAAAACAGGATTCCTCTGGGAAAAATTGCCATTTTAATGAAATGCCAAGA
ATCATATAGCTTAGTGTTATACACTCTTTGTCTTGAGACCATTTtaactt
ctttttcaaaagaatgttGACATGGTCCAAATACAACAATGGTTTTGTAT
TTCCCTTttaggaaattgactttgaagaAGTTAAATCTATTGAATTGATT
GTTGGCAATGAATCAGCAGATCTTGATAGCATTGTTTGTCCTCTTGTTTT
GGCGTATTACCGATCATGCAAAATTAATATTCAGGTTTCAAGCATtatat
attttcttcattttgttaTCTCATGATGAGACGACCTTTTCGATACAAGT
TCTTGATACCTGAATGTATGTTTCCAGGATCCTTGTCACAAAAGCCTTGt
cctttgaaaaaaagtatgggtatataaatcaaaagaaatgatATTCATCC
AAGTTAGTAAAGTTTCTTGtgatgtttttctcaaagaTTGATGAATCAAA
TTCAATATGTTTACCTGTTGTTTGGTGCCACAAAGATGACGTCGAATTAA
CCACTGAAGCAGTTGCATTATTCAAGGACACCTGCTTGCCTATAAAAGAT
CTGTTATTCCAAAATGATTGGGAAGCTTTAAAGGAAAAGTTTTCACACAA
GGATTTGAAGGTGACTTTAGTTGATCATAATCACGCAAGGGAGCACCCTG
ACTTAAATgaatttgttgttgaaattattGGTAAGCTAATATTTTGaatt
aaatgtttttaatgTGTGTTTAGAAAGTACTAAGTGAAAACCTTCTTTCC
AATTCTGGACATTATATGATTCAAATGATTCATTCACTACCTCCTAGATT
TTATAAGCACTTCTATTTGCTAATTTCAGATCATCGCATTGATACAAATG
ACTTCATAAACATATCCAAGAAGATTCAACTCTTGGGTTCCTGTTCCTCa
ataatcgcacaatggcttcaTCAAACAGATAGTGAATTTCTCGTCAATTC
ACNGTTCAACGACACCTGCTTGCCTATAAAAGATCTGTTATTCAAAAATG
ATTGGGAAGCTTTAAAGGAAAAGTTTTCACACAAGGATTTGAAGGTGACT
TTAGTTGATCATAATCACGCAAGGGAGCACCCTGACTTAAATgaatttgt
tgttgaaattattGGTAAGCTAATATTTTGaattaaatgtttttaatgTG
TGTTTAGAAAGTACTAAGTGAAAACCTTCTTTCCAATTCTGGACATTATA
TGATTCAAATGATTCATTCACTACCTCCTAGATTTTATAAGCACTCCTAT
TTGCTAATTTCAGATCATCGCATTGATACAAATGACTTCATAAACATATC
CAAGAAGATTCAACTCTTGGGTTCCTGTTCCTCaataatcgcacaatggc
ttcaTCAAACAGATAGTGAATTTCTCGTCAATTCACCTGATGTCTGCAAA
ATGCTTTTGGCAACTATCTTGGTTGACACTTATAACTTGGATTTACACAG
CGGTAGAACAACTGAACAAGATATTTTCATTGCTGAGCTTTTGTCAAGCT
ATATAGAAGATGTTGATACCGATGAACTGTTCACAAAACGTCAAAAAGGT
TTGTCAGTTGATTTGACTCATTAGGACTGCACTATTTTACTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038635XLOC_038635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061574-exon-scaffold_36-1491911889:670904..671296TCONS_00061574-exon-scaffold_36-1491911889:670904..671296Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1510915933:670904..671296TCONS_00061574-exon-scaffold_36-1510915933:670904..671296Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1575043694:670904..671296TCONS_00061574-exon-scaffold_36-1575043694:670904..671296Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1491911889:671720..671772TCONS_00061574-exon-scaffold_36-1491911889:671720..671772Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1510915933:671720..671772TCONS_00061574-exon-scaffold_36-1510915933:671720..671772Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1575043694:671720..671772TCONS_00061574-exon-scaffold_36-1575043694:671720..671772Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1491911889:672065..672187TCONS_00061574-exon-scaffold_36-1491911889:672065..672187Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1510915933:672065..672187TCONS_00061574-exon-scaffold_36-1510915933:672065..672187Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1575043694:672065..672187TCONS_00061574-exon-scaffold_36-1575043694:672065..672187Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1491911889:672390..672633TCONS_00061574-exon-scaffold_36-1491911889:672390..672633Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1510915933:672390..672633TCONS_00061574-exon-scaffold_36-1510915933:672390..672633Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1575043694:672390..672633TCONS_00061574-exon-scaffold_36-1575043694:672390..672633Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1491911889:673217..673549TCONS_00061574-exon-scaffold_36-1491911889:673217..673549Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1510915933:673217..673549TCONS_00061574-exon-scaffold_36-1510915933:673217..673549Clytia hemisphaericaexon
TCONS_00061574-exon-scaffold_36-1575043694:673217..673549TCONS_00061574-exon-scaffold_36-1575043694:673217..673549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:670904..673549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.7638	33.6281	23.9415	25.5581	10.7088	9.19433	11.8479	12.7255	12.4455	13.2417	8.68006	9.17105	7.84101	6.02184	13.27	14.6031	26.9983	26.5919	4.43057	8.49993	18.3269	15.2608	42.1676	39.044	6.59649	8.81717	13.5422	8.39843	19.6362	21.3021
Blast
[Close]
BLAST of TCONS_00061574 vs. Swiss-Prot (Human)
Match: PRUN1 (Exopolyphosphatase PRUNE1 OS=Homo sapiens GN=PRUNE1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.888e-17
Identity = 61/230 (26.52%), Postives = 117/230 (50.87%), Query Frame = 3 
Query:  420 LRNYLQKFKEIDFEEVKSIELIVGNESADLDSIVCPLVLAYYRSCKINIQIDESNSICLPVVWCHKDDVELTTEAVALFKDTCLPIKDLLFQNDWEALKEKFSHKDLKVTLVDHN-HAREHPDLNEFVVEIIDHR-IDTNDFINISKKIQLLGSCSSIIAQWLHQTDSEFLVNSPDVCKMLLATILVDTYNLDLHSGRTTEQDIFIAELLSSYIEDVDT-DELFTKRQKG 1100
            + +YLQ  +    +E + + +++GNE+ DLDS V  L LA+Y +     +  E+  + +PV+   + ++ L  + V   +   +P   L+F+++ + L   +    L + LVDH+  ++    L E V E++DHR I+          ++L+GSC++++ + + Q   E L        +L  TI++D  N+DL  G+ T +D    E L +   D+   +++F   QK 
Sbjct:    1 MEDYLQGCRAA-LQESRPLHVVLGNEACDLDSTVSALALAFYLA-----KTTEAEEVFVPVLNIKRSELPLRGDIVFFLQKVHIPESILIFRDEID-LHALYQAGQLTLILVDHHILSKSDTALEEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQ--TAALLHGTIILDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKA 221
The following BLAST results are available for this feature:
BLAST of TCONS_00061574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRUN12.888e-1726.52Exopolyphosphatase PRUNE1 OS=Homo sapiens GN=PRUNE... [more]
back to top