Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061676 ID=TCONS_00061676|Name=TCONS_00061676|organism=Clytia hemisphaerica|type=transcript|length=2418bpRun BLAST on NCBI protein sequence of TCONS_00061676-protein >TCONS_00061676-protein ID=TCONS_00061676-protein|Name=TCONS_00061676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp MDKNSNGGVKAECNKKAIEYLQSIDFKALGRTVFTDHLATVSEAGKNIGERun BLAST on NCBI transcript from alignment at scaffold_36:989117..998667- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061676 ID=TCONS_00061676|Name=TCONS_00061676|organism=Clytia hemisphaerica|type=transcript|length=9551bp|location=Sequence derived from alignment at scaffold_36:989117..998667- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:989117..998667- >TCONS_00061676 ID=TCONS_00061676|Name=TCONS_00061676|organism=Clytia hemisphaerica|type=CDS|length=10680bp|location=Sequence derived from alignment at scaffold_36:989117..998667- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061676 vs. Swiss-Prot (Human)
Match: CATIP (Ciliogenesis-associated TTC17-interacting protein OS=Homo sapiens GN=CATIP PE=1 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.270e-56 Identity = 107/329 (32.52%), Postives = 181/329 (55.02%), Query Frame = 1 Query: 352 AECNKKAIEYLQSIDFKALGRTVFTDHLATVSEAGKNIGELTVSVSETVRGDEI-----CYYVHAQSHGVLDGVPMGTSVTAYITRGVVTLEQTQHEYIKFTNKPLDKKTIVVKEGDKLRVKKITSAGRDVSENELTYTLNHEKGFVSEGANIILQRIMCQRNDVPENAKFLALDNASCLTTMRYAKLPERTTTIADSTLALFGIEREVLGMESLTVRWNTHFLEGGYMATRETIGSSVRMQLIQLPTKDGQPKKGEKSVSARNDLHWEADMQMTSHYIERKEKLINDHKTYVRHKPELRALLEDFCQFVLLRKPDDVCSFASDYFASF 1323 E N +AI++L S+ + L F++ LA VS+ G+ GELT+ V +++ C +VHA S G LD + G S+ Y++ + +EQ ++IKF P+++K ++K+ D+L V + G +V ++ + KGF+SE AN++L R+M R VP NA+FL LD L + Y L +T + +F +E+ V E + + + L G++A R +GS + ++P + + + V + L WE DM++ S +++RKE+L H +Y+R PE AL+ DF F+LLR+P+DV +FA+++F F Sbjct: 26 PEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTGEPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHSQDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVLLRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGIPMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELYSKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPF 354 The following BLAST results are available for this feature:
BLAST of TCONS_00061676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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