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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061800 ID=TCONS_00061800|Name=TCONS_00061800|organism=Clytia hemisphaerica|type=transcript|length=1633bpRun BLAST on NCBI protein sequence of TCONS_00061800-protein >TCONS_00061800-protein ID=TCONS_00061800-protein|Name=TCONS_00061800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp MANTNDVDELFELRNSFYIGNFQHCINEAQSLNPSSSDLRVERDVFLYRARun BLAST on NCBI transcript from alignment at scaffold_360:194756..208571- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061800 ID=TCONS_00061800|Name=TCONS_00061800|organism=Clytia hemisphaerica|type=transcript|length=13816bp|location=Sequence derived from alignment at scaffold_360:194756..208571- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_360:194756..208571- >TCONS_00061800 ID=TCONS_00061800|Name=TCONS_00061800|organism=Clytia hemisphaerica|type=CDS|length=10836bp|location=Sequence derived from alignment at scaffold_360:194756..208571- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061800 vs. Swiss-Prot (Human)
Match: COPE (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3) HSP 1 Score: 339.347 bits (869), Expect = 5.395e-112 Identity = 168/298 (56.38%), Postives = 223/298 (74.83%), Query Frame = 1
Query: 211 ANTNDVDELFELRNSFYIGNFQHCINEAQSLNPSSSDLRVERDVFLYRAYIAQGKYGLVLSEVTASSPPELQGVRLLADYLQNPGXXXXXXXXXXXXLNGS-DFSEY-FLLMASVIYFHENDTDSALRCLFQSTALECSALSVQIYISLDRLDLAKTEIGRMQQNDEDATLTQLAMAWFNLAVGGEKCQDAYYIFQELIDKYSSTISMLNAQATCYMRMGKFEDADSNLQEALDRDSNNPETLCNMAVLAQHLGKAPEVSNRFISQLRAGHDRHCFTKDYLKKEADFDRIVESYAASA 1098
+ +VDELF+++N+FYIG++Q CINEAQ + SS + VERDVFLYRAY+AQ K+G+VL E+ SS PELQ VR+ ADYL + ++++I+ ++ +++ S D + FLLMA+ IY H+ + D+ALR L Q +LEC+A++VQI + LDRLDLA+ E+ RMQ DEDATLTQLA AW +LA GGEK QDAYYIFQE+ DK S T+ +LN QA C+M G++E A+ LQEALD+DS PETL N+ VL+QHLGK PEV+NR++SQL+ H H F K+Y KE DFDR+V YA SA
Sbjct: 11 GGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPSA 308 The following BLAST results are available for this feature:
BLAST of TCONS_00061800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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