|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062016 ID=TCONS_00062016|Name=TCONS_00062016|organism=Clytia hemisphaerica|type=transcript|length=3040bpRun BLAST on NCBI protein sequence of TCONS_00062016-protein >TCONS_00062016-protein ID=TCONS_00062016-protein|Name=TCONS_00062016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp MILLQLTLLAILANCTSAQDCTCDLISNQCDLNCCCDPDCNENDKLAFSSRun BLAST on NCBI transcript from alignment at scaffold_361:786340..823947- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062016 ID=TCONS_00062016|Name=TCONS_00062016|organism=Clytia hemisphaerica|type=transcript|length=37608bp|location=Sequence derived from alignment at scaffold_361:786340..823947- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:786340..823947- >TCONS_00062016 ID=TCONS_00062016|Name=TCONS_00062016|organism=Clytia hemisphaerica|type=CDS|length=20952bp|location=Sequence derived from alignment at scaffold_361:786340..823947- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062016 vs. Swiss-Prot (Human)
Match: TECT3 (Tectonic-3 OS=Homo sapiens GN=TCTN3 PE=1 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 1.661e-38 Identity = 143/548 (26.09%), Postives = 232/548 (42.34%), Query Frame = 1
Query: 166 KLAFSSCIPENVNRIEEVCVSDNILYSSNNKYQAQ----GNGMGMFCIYKDNYEARHLYSNVPFVSTKASFDALADQFESSSYHSMTNNEDQTTVSTEKENLQNTFKAGDPMYILFDN-NQQGYLPLPTTFLTNE-CEDQNQAKFLFQNKTTCKRSVGNLQTECGTKKSLNAQTYINGFKVAPYPSFINGEVQFTMVTNENNATIQRVQTSRVQSNDTNLIQPTLTTPLKCIENGLQTDCPFNDAQAPTWNGTHCENVLHEVEYNIKYTINSTVTISEVSVAFVLG----SISPPDSLMQKFSYKFEKSGVSTSNDTTTERSGNPGYLTGLPIKTGTGYTDSLTETEKINITESADVLTLMTSPSNSLCGNPMEREEVKFGINYQATCFIQMEKTVMTTQDCVNLQNEIDNVLLPTNLPNRVTSFGNTITQNVDQWVTVINARPNAAPTESNGYCTNMMTDVSFRILYSKTGFYANPQNQIVGFEINY--GSLKDLQYQCPGLFCDDVNRALISQSVSFIDVSTTPVSEVKPKPKFRSKAPNDFFYPF 1773
+ FS C+P +V VCV +++++ SN+ + ++ NG+ FC++ +N + +T +F ALA +F S+ T + + ++ + ++AGDP+ F + L P C + N A FL TTC R NL + C +LNA +Y N T+ +V S + P + T + A AP G C+NV+ +V Y I+ N T I +VSV+ LG ++ P SL Q F +F ST+ T+ RSGNPGY+ G P+ L T+ I+ + +TL+ S N C ++R EV+FG+N + C ++++K DC +LQ EI L P V FGN W ++N + + C + + ++L++ G +NPQ + G Y S++D Q V ++ V+F+D++ P + +PK K P DFF PF
Sbjct: 115 RTVFSFCLPGSVRSSSWVCVDNSVIFRSNSPFPSRVFMDSNGIRQFCVHVNNSNLNYFQKLQKVNAT--NFQALAAEFGGESF----------TSTFQTQSPPSFYRAGDPILTYFPKWSVISLLRQPAGVGAGGLCAESNPAGFLESKSTTCTRFFKNLASSCTLDSALNAASYYN-------------------------FTVLKVPRSMTDPQNMEFQVPVILT---------------SQANAPLLAGNTCQNVVSQVTYEIE--TNGTFGIQKVSVS--LGQTNLTVEPGASLQQHFILRFRAFQQSTAASLTSPRSGNPGYIVGKPL---------LALTDDISYS-----MTLLQSQGNGSCS--VKRHEVQFGVNAISGCKLRLKKA-----DCSHLQQEIYQTLHGRPRPEYVAIFGNADPAQKGGWTRILNRHCSISAINCTSCCL-IPVSLEIQVLWAYVGLLSNPQAHVSGVRFLYQCQSIQDSQ---------QVTEVSLTTLVNFVDITQKP-QPPRGQPKMDWKWPFDFF-PF 573 The following BLAST results are available for this feature:
BLAST of TCONS_00062016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.