TCONS_00062508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062508
Unique NameTCONS_00062508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062508 ID=TCONS_00062508|Name=TCONS_00062508|organism=Clytia hemisphaerica|type=transcript|length=2518bp
tttagataatataaaaattcaaaaaacaagtatGGCAAGTGTTGTGGTAT
ACGTTGTGTTTTCAATCATGGCTTTCTTTTCATGTGCCACCATCTTTGTT
GTAATGTCATCCAAATTTCAACACTCGTTCCCACTCTCCTTCCAATTTGA
CCAATCAAAAGACAGGAGATCTGTTGAAACTATGGAAACACAGCTTGATG
AAAACAGAAGAGAAGACGTTGAGGCTGAATATTTATTAGATGATAAAGAA
GGAGAAAAAGAagtagaagaagaagaagaaggaattGATGAAAAATGTCC
TTTTGGCTTTGATTTCTTAAAAAGGGAATCGGAGGACAAATCCGCCTATT
CACCGCCAAGACTTTTATTACCAGCCAATCGTCATCAGAATTTCTCTGGT
GCTGTATTCAATCGTGATTTGATTTGTCTTGACACACTGGATGCTAAAGA
TGGACAATGGGTTGGTTTCTATGAATGCCATGGTCAAGGTAGAAATCAGA
TGATTACGTTTTCACAAGACGGCTTGATAGTGACAGATAATGGTCATTTA
TGTTTGGCCATCAAAAACCTTGTTTCAGAAGAAGTCATTTTGAAGAAATG
TGATCATCTAGACGAAACACAGATCTGGTCAGTACAAAGTAGACGTGGTT
GGTTGATGCCAATTGTCAAAGCACATTACTGTTTGACAGCTCCTGATCGA
GAGTTTGATCCTGTCAAAATCTCAATATGTAAATTAGATTCTGAACAACA
AAGATGGCAACATTCTATTCAAGAAGTTTTATCTTTATGGATCACCGGCT
CATTCCACCAGCATTTCTTCTCAAATCGGAAACAGAAAAAGAATCGAGCT
AAAGTCAACAAAGTTCTTTTACATCAAACACCACAACAATCGTTAGATGG
TAATATCCTTTTTGGATGAATGTttctttgttattgttttgaaagaATGG
ATATTGATTTTGCCTTGGCACTGGAATTCTTTACCGACTTTATTGGGCAT
AAAACATGTTTTTGTCTGCCTTACATGCATTATTGGTTAGTTGGCTTGCT
TGGCATAATCACCCTGCAAAATTGAAATGACATTCTCGGGGGATTTAAAG
CTTTCAAGTTTCAGAAACTGACCAAGTTTTTTACAAGATCTGAGACTGGA
AATGCTTACGAGGACTTTAGTTATTGATAAAAATTGTTTTAGTCGAGAGG
GAGGGTTACTCAATCAGTCGGCGGGTACACGAGTCCAGGGTAcacttttt
taggctctgaagggGTCCCAAAGATTTATATCAgccagggtccacttttc
aaactccagcagCACGTCCTCATCGGCCTTTAAGGCCGTTGCCCCCTCAC
CCGGCCggggagtacataattatttaGAATCCTAATTCGTTTTCGTaaga
ttaaaggttttgtttttaaataagagtgatattgtttacttactcatcaa
ttttaattcacaagctttttcacattggattgacacggatgtggggCAAG
ATTGGTcggaaaaaggaaaagaaaaaattatgatagttttgagtttgacc
gactggatttgattTCAGTCTGACATAATGTCCGAGTGactaaaaatatt
gatttgCAGCTCTGTGTACATAGGCTGCTTACGTAGTATATTCTCGCCAA
GAAAAAGAGCATTCTTGTGTTTGAAACACACCCACGGGGACCATATTGAT
TTTCACCCGATTGACAATTGATCACGTCGtgtttttatttcgattttctc
ATATTTATGATGTATACATCACCATAGTTGCCTATCAATATTCGATTCAA
AGTAATTTATTCTGGTTCTTTTCATGTGTATTTCGACTGAAATTATTATT
GAAAACTAGATAATACGTTTAggggttttgttttgtgtttccgtgtttcc
catttcatatcagacacatattttatatcaggacagtgtctgcttattgt
tatattatgctgatacaagcgaaaaaatgtttttcttttcctctctttga
ccaatcttgctccacatccgtgtcaatccaatgtgaaattGAGCGAAAAA
GCTTGCGAtataaaattgacgagtaagcaaacgatatcactcttatttaa
aaacaaaacctttaagctcGGCATGATTATTCATTTCTTctgtttatatt
tatttatagtAAATGCCATTTTGtggctttttaaattttttattaaatat
ttgtAAATTCTAACCGAATTTTAAACAAACTTAACCCCCTTCGATATTTG
CACTCCAACAAAATGGCGGTACTTGTTTATTACGTTGCTAGGAAGTAGAC
ACCCGTTTGTTGCTATGTAAACCAGACATTAAAATACCAAACGTTTTGAC
CAATGaggtttaaatttatttttttggtacCACATTCAAAGTATTTTCTT
AATGGGAAATACTCCCACGGTTATGGCCAACACTTCCCTGTCTGATAATT
TCATTCATACCCACGTTATAGGTAGCCATCAAAACCGGGGGTAAATGACA
GTTATATAAACTTACGGA
Run BLAST on NCBI

transcript from alignment at scaffold_367:29229..34378-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062508 ID=TCONS_00062508|Name=TCONS_00062508|organism=Clytia hemisphaerica|type=transcript|length=5150bp|location=Sequence derived from alignment at scaffold_367:29229..34378- (Clytia hemisphaerica)
TTTAGATAATATAAAAATTCAAAAAACAAGTATGGCAAGTGTTGTGGTAT
ACGTTGTGTTTTCAATCATGGCTTTCTTTTCATGTGCCACCATCTTTGTT
GTAATGTCATCCAAATTTCAACACTCGTTCCCACTCTCCTTCCAATTTGA
CCAATCAAAAGACAGGAGATCTGTTGAAACTATGGAAACACAGGTACATA
TGCTTAGAGATATTTTCCAAATAATTTCATCTGCTTTGAAGGGGGCCCCC
AGCGGTTTGCGTGATTGCGTGAATGGGCTTTAGAACATCCAAAAAATTTG
AAGGAAATTGTGTGTTTCAGAGTCCGCAAAACCTGATTTGAACTTGTCCT
TAATTGTTTGCCTATCGAAGCCTGATGTTCTTATAAAGTTTGTTCCTAAA
TAAATAAATAATATATTTCCTTGACAAGTTAAAAATGGTACATAACTCCG
AGTTTCATGCTCTCCTAGCAATCGTCAGATGTGAATAAAATCAAAACATA
CTTCTCTTTTTCTACAAAGGTTAAAACATTGAAAAAAATGAAAAAAAATG
ATAAAAAGTTAAAAGGTGATAAAAATGATGCGTGCATATTAAAAATTAAT
TTCTAATTGTGAAATAAAATGCTATGGTGGATTCAGAGGGACCTTTTTAA
AGTTTTTTAATAGATATTTATTGACGTGTCTGCAGGTTGAAATCAGTTCA
GTTCTCTTCTTAATTAGTTTTTGTTTTGACGTAATGATATGGTATTTTTT
TCCGTTAAACATAAATTGCAAACTCTACCACCATTGTTGTATGGGCGGGC
TCGGTCAATTATCTTCTTAAAGTTTGTTCTTATTAAAAAATGTGTATTTT
GATTTCTTTTACCTTCAGCTTGATGAAAACAGAAGAGAAGACGTTGAGGC
TGAATATTTATTAGATGATAAAGAAGGAGAAAAAGAAGTAGAAGAAGAAG
AAGAAGGAATTGATGAAAAATGTCCTTTTGGCTTTGATTTCTTAAAAAGG
TTGGCCGTCGTTTTGTAAGAGATTTCCATTTTTGCACTAAGATTCTTGTT
AATTTTTCTTCCGGAAACTGCCTAACTTTCCGAAACTCATTTTTCAACTA
CCCAAAAATTTGGTCTTTTTCCGTTAGAAAAGTGGCAAAATAATGTTAGT
GTGGAAATGGAAATCTTATACAAAACGAACATTTTACAATCTTTTTTTCT
TTTCAACCATTTGGTGTTATCTTACTCAGATAGTTTACTGAGTGATAAAT
CATTGGGCCTCAGTCTCAATTTATGCCATGTTAGAATCAAAATAATGCTA
GAAACTTAACAACAAATGAGTATTTTAGTTAGAATGCTGAAGTTTATGGT
TCGGGAAATTATTCGCATTTTCATTTTTTTAAATCTAGGATAAAGATAAA
GCTACCAATTATGAGCCATTCTTTTGGTTAAACATTGCGTGTTTCTACCA
AAAAAAATAGTTTCGAAATGACCCATATCCAGAAAATGTGAACATATCCT
TTTTTTGCCACACAATTTAATAACAAATAAAACAAAACTTAATCCGAATA
AGCTCATCTTCTTGGAACAACCTCCGAAACAACAGACTGAATTTGAAGCT
GCAAAATCATACCAGTATTTAAAATGATGATTTTGTAGTAGCGTTATACT
AATGACAATGACTCGATAAAGAAGTCGAAATATAAAAGAAGATGAGCTTA
TTCGCAATAAAGGTCATAATATTTTGATAATTTGGGTTATTTTAACGTTT
TTCAAGATTTAAAGTTCCGGCGAGAAAGTCGATTTTGGGCTATCTCTTTA
ATTTAATCGAATATTTCAATTCGGAAGGGGTTGGCAGACTTACAGGCTCT
ATTTTGAGCATTAGTGGACTATTTTCTAACTTTTGGATCCTCAGATCCTA
AGGTCCTAAGTATTAAGTCTCATGATAAAACTCAGAGTTAAAACTCTACC
CTTCCAACCTACTTTAGAGCACTTACAAATCGCTTGTGGTTCAAAAACTT
CCTGGTGTATTTCTCTTTTTTCTCAAATATATGACCTTGATTGCGGATTA
AGTTTTGTTTTATGTGAACATATGGTTTCAATTTTTTAGTATCTCAAACC
CTTTTAGGGAATCGGAGGACAAATCCGCCTATTCACCGCCAAGACTTTTA
TTACCAGCCAATCGTCATCAGAATTTCTCTGGTGCTGTATTCAATCGTGA
TTTGATTTGTCTTGACACACTGGATGCTAAAGATGGACAATGGGTTGGTT
TCTATGAATGCCATGGTCAAGGTAGAAATCAGGTAAAGATATCTCGAAAA
AGATGAGACTTGTTCTGTCAAATCTAATCAGATTTAACGCTAACATGTCT
AGGCTCCTGCTCATCCTCTAGCGAAAAAAGTTTCTATATAGGAGATATAT
CTATAGAGGTTTGCGAATCAAACTGTAACATGTCATTTTTTCTACAACTC
AGTTTTTTATAGAAATTTGACCCCTTTTTCATTTCTGGTAGGTCAAAATT
GTCAGATAGATAGCCTTGATTGACTGAAATCGATTTCAAAGTTTTATATA
CCAAATTTTAAGCTGAGCTTTCCTCTATAGAACAAAAAAATATTCAGCTA
GATGACATATCTATAGATTTTCATTGGTTTCTATAATTGTGTAGATGATT
ACGTTTTCACAAGACGGCTTGATAGTGACAGATAATGGTCATTTATGTTT
GGCCATCAAAAACCTTGTTTCAGAAGAAGTCATTTTGAAGAAATGTGATC
ATCTAGACGAAACACAGGTAAAAGATTTATAATATCCCTAAAGTTATTAG
AATTTACTCTAAGGTCCCGAATAGTAGTATGGGGGTCCAAATAAAAGGGG
GGTCAGAATTTGTACATACAGAACGGGGCTACTGAGAACAATTTTGCTTG
TGATAGCTGAAAATATTTTCAACAACGAAAAATAAAGGTAGAAGGAGGAC
TCGCGTTTCATTCCGTTACTTTTATCCCCACTGGCTGAAAAAAATGACCG
GGTCTGTGGGAAGGGGATGTTTGATAGTGGAAATAACTTTTAACGCAACA
ATCATTCATTTACACAATGTAGGTGTCACTATCCATACTAAGGCCATCTT
TTCTGATTCTCTTGACCTATGAGTTGAAAAGTACAAATTTAGAAATCGCG
CGTTTTAGATTATCACAAAGGCTAGCAAGAAGAACAGTCAGAATTTATTA
AGTTTTCAAACATCACAGTTTAATTTAATATCGTTTTACATTCCATCATT
ACAGATCTGGTCAGTACAAAGTAGACGTGGTTGGTTGATGCCAATTGTCA
AAGCACATTACTGTTTGACAGCTCCTGATCGAGAGTTTGATCCTGTCAAA
ATCTCAATATGTAAATTAGATTCTGAACAACAAAGATGGCAACATTCTAT
TCAAGAAGTTTTATCTTTATGGATCACCGGCTCATTCCACCAGCATTTCT
TCTCAAATCGGAAACAGAAAAAGAATCGAGCTAAAGTCAACAAAGTTCTT
TTACATCAAACACCACAACAATCGTTAGATGGTAATATCCTTTTTGGATG
AATGTTTCTTTGTTATTGTTTTGAAAGAATGGATATTGATTTTGCCTTGG
CACTGGAATTCTTTACCGACTTTATTGGGCATAAAACATGTTTTTGTCTG
CCTTACATGCATTATTGGTTAGTTGGCTTGCTTGGCATAATCACCCTGCA
AAATTGAAATGACATTCTCGGGGGATTTAAAGCTTTCAAGTTTCAGAAAC
TGACCAAGTTTTTTACAAGATCTGAGACTGGAAATGCTTACGAGGACTTT
AGTTATTGATAAAAATTGTTTTAGTCGAGAGGGAGGGTTACTCAATCAGT
CGGCGGGTACACGAGTCCAGGGTACACTTTTTTAGGCTCTGAAGGGGTCC
CAAAGATTTATATCAGCCAGGGTCCACTTTTCAAACTCCAGCAGCACGTC
CTCATCGGCCTTTAAGGCCGTTGCCCCCTCACCCGGCCGGGGAGTACATA
ATTATTTAGAATCCTAATTCGTTTTCGTAAGATTAAAGGTTTTGTTTTTA
AATAAGAGTGATATTGTTTACTTACTCATCAATTTTAATTCACAAGCTTT
TTCACATTGGATTGACACGGATGTGGGGCAAGATTGGTCGGAAAAAGGAA
AAGAAAAAATTATGATAGTTTTGAGTTTGACCGACTGGATTTGATTTCAG
TCTGACATAATGTCCGAGTGACTAAAAATATTGATTTGCAGCTCTGTGTA
CATAGGCTGCTTACGTAGTATATTCTCGCCAAGAAAAAGAGCATTCTTGT
GTTTGAAACACACCCACGGGGACCATATTGATTTTCACCCGATTGACAAT
TGATCACGTCGTGTTTTTATTTCGATTTTCTCATATTTATGATGTATACA
TCACCATAGTTGCCTATCAATATTCGATTCAAAGTAATTTATTCTGGTTC
TTTTCATGTGTATTTCGACTGAAATTATTATTGAAAACTAGATAATACGT
TTAGGGGTTTTGTTTTGTGTTTCCGTGTTTCCCATTTCATATCAGACACA
TATTTTATATCAGGACAGTGTCTGCTTATTGTTATATTATGCTGATACAA
GCGAAAAAATGTTTTTCTTTTCCTCTCTTTGACCAATCTTGCTCCACATC
CGTGTCAATCCAATGTGAAATTGAGCGAAAAAGCTTGCGATATAAAATTG
ACGAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTTAAGCT
CGGCATGATTATTCATTTCTTCTGTTTATATTTATTTATAGTAAATGCCA
TTTTGTGGCTTTTTAAATTTTTTATTAAATATTTGTAAATTCTAACCGAA
TTTTAAACAAACTTAACCCCCTTCGATATTTGCACTCCAACAAAATGGCG
GTACTTGTTTATTACGTTGCTAGGAAGTAGACACCCGTTTGTTGCTATGT
AAACCAGACATTAAAATACCAAACGTTTTGACCAATGAGGTTTAAATTTA
TTTTTTTGGTACCACATTCAAAGTATTTTCTTAATGGGAAATACTCCCAC
GGTTATGGCCAACACTTCCCTGTCTGATAATTTCATTCATACCCACGTTA
TAGGTAGCCATCAAAACCGGGGGTAAATGACAGTTATATAAACTTACGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039170XLOC_039170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062508-exon-scaffold_367-1575043694:34186..34378TCONS_00062508-exon-scaffold_367-1575043694:34186..34378Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1575043694:33380..33510TCONS_00062508-exon-scaffold_367-1575043694:33380..33510Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1575043694:32097..32271TCONS_00062508-exon-scaffold_367-1575043694:32097..32271Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1575043694:31612..31734TCONS_00062508-exon-scaffold_367-1575043694:31612..31734Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1575043694:29229..31124TCONS_00062508-exon-scaffold_367-1575043694:29229..31124Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1510915933:34186..34378TCONS_00062508-exon-scaffold_367-1510915933:34186..34378Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1510915933:33380..33510TCONS_00062508-exon-scaffold_367-1510915933:33380..33510Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1510915933:32097..32271TCONS_00062508-exon-scaffold_367-1510915933:32097..32271Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1510915933:31612..31734TCONS_00062508-exon-scaffold_367-1510915933:31612..31734Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1510915933:29229..31124TCONS_00062508-exon-scaffold_367-1510915933:29229..31124Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1491911889:34186..34378TCONS_00062508-exon-scaffold_367-1491911889:34186..34378Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1491911889:33380..33510TCONS_00062508-exon-scaffold_367-1491911889:33380..33510Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1491911889:32097..32271TCONS_00062508-exon-scaffold_367-1491911889:32097..32271Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1491911889:31612..31734TCONS_00062508-exon-scaffold_367-1491911889:31612..31734Clytia hemisphaericaexon
TCONS_00062508-exon-scaffold_367-1491911889:29229..31124TCONS_00062508-exon-scaffold_367-1491911889:29229..31124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_367supercontigscaffold_367:29229..34378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26495	1.89344	1.27681	2.47886	2.56459	2.21865	10.5581	10.6892	5.9147	4.55618	5.72693	5.3477	2.70008	1.9638	2.2934	4.81585	3.23768	2.85198	0.196468	0.723772	1.9116	2.18188	2.71029	2.12132	1.73468	2.63486	0.767844	0.270203	0.870614	1.23049
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top