TCONS_00062514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062514
Unique NameTCONS_00062514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062514 ID=TCONS_00062514|Name=TCONS_00062514|organism=Clytia hemisphaerica|type=transcript|length=1073bp
CTTTTAGACTTCAAACATGAATCAAATAAAAGGTCGAAATCAAATTCAAT
ACATATTGGTCGGAAGTGTACCAACAggcaatttgaagtttttgttaCAT
CGATTAAGAGGTTTATGTGAAGAAGCAGCCCTGCAGGACAAATACTTTGA
AGACCATGAATCTGTGTATGTTATGAAGGATTCAtcaaattcgtcgaaaa
atttcCATCTTCGTGTACGAAGGTCGCTTATACAGTCAGATGCACCTCAT
CAATTGAGATACCTAGgtaCATCTGAGACTGGTGATAAAAGCCGTGCAGC
ATCTATGAGAAGTTGCATCGAAGTCGATTGTACCGAAAACATACGAGCAT
TTCTTGAACATATTGGTTTTCAATTCGATCATGAGACTATACTACGCggt
tatttattcaaaaaaggTCGCATGAAAATTTGCGTTTCAAGGCTACACAA
GATTCCGGAGAAAGGTGTTTTTCAGAATGCTATGCAAATGACTGATTCTT
ATTTAGTTGAAGTGACTTTGAATACATTAGTTCAACAAGACTCTTTATGT
GAAGATATGAAGGCTTTCGCTGAGTACCTGAAACCCATTGTTGTTTTAGA
TAAACTTGACCAGAAACGTCTATAAACTGGTATTGTGGGTATTTCATGCA
TTTTTAATAGAGGTTGTTCATGTTTGGTTAAGTTACATAAGTTCCACCAT
TAttgaagcaaacgttcgaatatGTAGAGACGATCCATTACgcaaaatcg
aacgtttgcttccaaaACAACGGAAATGGTGTAACgtaacaaaacatgaa
aaatttctATAGATAAGTCATTTCATTGACACATTAATAGGGTTGTATGC
CTTTTGATtgcgaagaagaaaatgatatGAAAATGCTGCTAAGAGATACT
GGTTTTCTTAACGGTCGAGTCAACTATCAGGATAAATAAACATTAGTATT
GCAATGGTGCGATGAAATGGCCGAAAGGTCTGGATAAAGACATAATAgtt
tgaaatgattttgaaatattttgtaatCAAGCAGTACAAGAACTAGCCCA
GAAGCCTGGCAATGAAAAatagt
Run BLAST on NCBI

protein sequence of TCONS_00062514-protein

>TCONS_00062514-protein ID=TCONS_00062514-protein|Name=TCONS_00062514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MNQIKGRNQIQYILVGSVPTGNLKFLLHRLRGLCEEAALQDKYFEDHESV
YVMKDSSNSSKNFHLRVRRSLIQSDAPHQLRYLGTSETGDKSRAASMRSC
IEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKG
VFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQK
RL
Run BLAST on NCBI

transcript from alignment at scaffold_367:147928..159805-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062514 ID=TCONS_00062514|Name=TCONS_00062514|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at scaffold_367:147928..159805- (Clytia hemisphaerica)
CTTTTAGACTTCAAACATGAATCAAATAAAAGGTCGAAATCAAATTCAAT
ACATATTGGTCGGAAGTGTACCAACAGGCAATTTGAAGTTTTTGTTACAT
CGATTAAGAGGTTTATGTGAAGAAGCAGCCCTGCAGGACAAATACTTTGA
AGACCATGAATCTGTGTATGTTATGAAGGTGAGAAAATCTGTTGAAATTC
TTGATCTTAGATTTTTCTACCAGGTGACCCACGAAAAAGTTCAGACAATT
CTCGACGTCTTGTGGCCGAACAAATCTCCCAAAGTGCTTAGAGTTTAGAT
ATTTAGAAAGTAGATATCCTAACTTAAAATTTGAGCTATCACTTTTTAAA
TTTGACCAATTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTATCAAATTTGGTATTTTTAGACGTT
TTTGATATACAGTTTTTGAAAAAAATCTGAAAAATCTACAAAAGCGCCAA
TTTTTATAAAAACTAGTCTTGTTTAGACAAAAATTACTTTCAAAGGTGTT
TTTATTAATCATTAATGTCATAAAACTCGTTAAGTAAGTCAATTTGTAAG
TGATTTTCTGATTGATTGCATAAATTTAATACCTCTTTTTTACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTCTTAGATTTCGAGAAAATCAGTTTCAAAGAGAGAAACTTTTTTGTG
GCGCACCCGGTACAATATGTCTCTCTTTCTCAAGCTAAAATCTTTATTAA
ATTTTGACCCTATGATTTTTGCCTGAGACCTGCTGAGACCGTCATATTTG
TCCGAAAAACACACCAAAGTGTCCGAAAAAAATTGGAACCTCTGTTATTT
TGATTCCCTACCTCTTAGCTTTCCATAAATGTATAACAAGTGCTTTGACT
AAAAAAGTCGAGCGACCTCAAAAGATCGAACAAATTTCCCCCTACTAATT
CTGACTTTCCTATTTATCCCAGCTCTAAAGATGGGTGTCGGAGCTAGAAA
AGGGATGTCGACATTAGCTTTCCATAAATGTATAACAAGTGCTTTGACTA
AAAAAGTCGAGCGACCTCAAAAAATCGAACAAATTTCCCCCTACTAATTC
TGACTTTCCTATTTATCCCAGCTCTAAAGATAAGGGTGTCGGAGCTAGAA
AAGGGATGTCGACATTAGCTTTCCATAAATGTATAACAAGGGCTTTGACT
AAAAAAGTCGAGCGACCTCAAAAAATCGAACAAATTTCCCCTACTAATTC
TGACTTTCCTATTTATCCCAGCTCTAAAGATGGGTGTCGGAGCTAGAAAA
GGGATGTCGACATTAGACTATCTTATGGTACCAATGCATTGAATCTTATA
TCTTATTTAGTTTTGAGTTTATAATGATAACAATTCTATTCGTCAGAACT
TTATGAATGGTAGCACGTAGGAGACTCTTTATCCTTATCTCCACCACAAA
TATTCAACAGAAATTCGAATAGTAGATATCACGTAGGAGACTCCAGCGGC
GGATCTGAGGGGGTTCAAATGGTTCAGCTGAACCACCCCAACCCTTTTAG
TAAATAAAAAAAACAAAGACCCTTTCTTCAAATCTAGTTTTCTGATCGGA
ACTGATTTTTCTTTTTGGTCATATCTCGATATTATTTTACCAGGGGTTGT
ATGCATGTAGCATGCGTTTCCGTGGTGCGCGCGACAAACTTAGCTTTTTT
CCGCGCTAAAAAATCTTTAGGTTATGTGTGTACGGCGTAGCTAGCTTTCC
CGCGCTGTAAAAAATCTTTATTATAACTTTTTTTTTGCGGGATTAATATC
TAGCTGTGTTCTGTGCTAGGAAAATCTTTGATTTTGAACCTGGTTCAGAA
AATGCATCCAGTGAAATGGCAAATTTGAGGTGGTTCAAAGAAATTTCTCG
AAAATACGAGACCGACCGTTTTAAGCGTAAAAGATTTTCCTACAAAAATA
ACTTTCAGTCGCATGTCGTCGCCGGCAAAATATTGAAATGATTTGAAGGG
TAGCCATTCGTACGGCAAACGACACGACCTCACTTCTTTGCAAGCGTTCA
ATGCAGTGTTTTAAAGAAAGGAATTGAAGATTGAAGTCCTGAAAAGTGGT
TATAATCAGGCAATTACTTATCTTTTTGAGGACATTTTTGGTTCAATTTA
ATCAGTAAATTTGAGAATCACACAACAATATCAATCAATGTAGATGATTT
TGACAAAGACTCTGTGTGATTGAATTTTTATCTGCTTTTGTTTGATGTGG
TGCAGAGTGATAAAAGAAAAAGACTTTCATTCTGAGGAAACATTTTTGTT
TTGGTTTATCTTTAGAGGAAAAGCATTCATACCAACAAAAACAAAACTTA
AATCAATTTTGCTTGATAAATTAAGTTTGGAATTTATTTATGGGAAAGGA
CTTATTTGTGAATATTTGGTGGAAGTTTATTGTGTCTTGAATATAACCAC
GAATTTACGTTTGGCTCTTCTCCCATCATCGGGCATCGGGAATATCACGG
GGAAAAATCTACTTAGCTACATATGGATCACAAGATTTGCGATTGGCTAC
GTTTTGAGAGGTTCTTCTCTGTATATTTATTTGCATAAATTCATTAGAAT
TACTTTCGCAAATAGTTTCTCCCATCATTGGACATTGATGAATTTCACAT
TGCTACGTGTCGAGAGATTCTTCTCCCATCATTGGACATTGATGAATTTC
ACATGGAAAAAAAGCTAGCTAGCTTTATTTTTGAAAACTATTACAGTATA
GAAAAACAAAACAAAATTTCTTTTATAACAGAGACTGGAAGAAAGGTTAG
GGAACAAAAGTTTAGCAATTTGATTGAATTTGGTTGAAGAATGAAATTTC
TGGAAAGGTGAACCTTCATGCATGCTTCAAGATAATGTGATGCGAGGAAA
TATTTTTGGTTTCGTTTCGTCATGTCATAAGAAGAGAGTTCATACCGCTT
TATACTTGCAAAACAAAACTAAGATTACTTTTACGTGATCATATGAAAAT
GTGGTGTACTTTTATAAAAATTATACAAAAAGAGACATTAGTGACCTCTG
AAAAAATTACCCTGTTGTGCTTAATTGTAGGTGGACATTTTGCAATTTTT
TGGAAAAAATCAACCAATTAGCATTTTGTAATGACCTCCAATTTATGAAA
TTTTCCTGATAAAGTGCCAAACCTTTATTTTCCTTGGGTTTTTTTTGGAA
AATCACCCCAAAATCAGTTAATAATGACCCCCCATTTTATGCACAGAAGA
GTACGGTTGAATGCAGAGTTTATGAAATGATATATAACAACAATCTCTAC
CAAAAGAATTATAAACAACACTCCATACAATTGTGAAAGTTGAAAAAGTG
CTTTCCTACAGATTGTTGATGATTACTGTTAGTACCTCCTTTAATAATGC
TTAAAAACATCAAACTTTTTACTTTGAATGTAAAAAGTACTTTTTTATGA
GATTATTCATCTAATTTGTCGAGAGCTAGAATTTCTTGAGTCTATTTGAG
TACATTATATCTCCACTTTTTGGCAATCTTTTATTTTTCCATCTTAAGAA
TATTGTATTCCCTTGTATGTATTATATAAGTAATCTCCTTTATTTTTTAA
CTTGATCACTGTTTTCAAAATATTATCCATTTCTGGTTATAATGTAAACA
TACTCAACATGAAAAGTTTTTGCTTGATTGTCAGCCTTAATTAATTCGCT
ACAAAGAAATTCCATAAAAAAATGGTTATAAGAATAAATTATCGAACTTT
TTTAAATATTCACGAAATGAAACTGAAGTGTGTAAAGTATTTAATATTAT
AAGTTGTCTTATTTTTTCTTCAAACTTTTCTTCAAAACCAATTATTTGCT
CTATGGCTTTCTCAAAAACATTTTTTGCAAGAACAATATGAATATATAAA
AGAATATACACCAAACAAGCAGTTCTGAGCATGCTCTGGGTGTCTGTTTT
ATCAAAATAAAAGGTCATTCCAAAGAAATATAAGAAATATAATACTAACT
ATATTTCCGTTTTATGAATGTTTTGTGTGATAAGATTGAAAAGAAGAAAC
TAGATGTGCGCAATTGCAGTTAGGGAATTTCCCAATGTATATATGAATAT
CACCACAAACGATTATTACACGTTCAGCCTCTGGCTGTTCAAGCCGGGAC
AAAAAAAAATTGGCCTACCGCCCTCCTTTCAACGCATGGGACCATTCAAA
AAGTACGTACGCTCGAGAGGGGGGTACTCCCAAAAGCGTACGAGGGGGAG
GGGGTCCTTGAGGAGAAGTACGTACGCTCGTAAGTTTTCCTAAACTGTCT
TTTTTGAGAGAAACGCAATATTTTCACATCAAAGAATGGTTTTTGCGATT
GTTATTTTCATTTCTCCTTTGGTATTTTTGTTCATCTTATAGATTCTTTT
AATTTCTTGAGACTTGAGACTTGTTATAAATACGATTGGATACCTACATA
TTCTACTGTTACAAGAGTTACAAGTTTCGACTTTGGTTAGGGGATGTACT
AAAAAGCGTACGTACGCTAAAGGGGGGGCGGGGTACACATAAAGCGTACA
AGGGGGAGGGGGAGTTTGCCTTTTTCGAGCGTACGTACTTTTTGAATGGC
CCCCAGCCGAGGCCTATGTTTGGAGTTCATAGGTAATGGGAACTGCAGAC
GTGCAGGCGCTCATCAACGTCCCCCATGTTGAATGGAAAAAAGGTGACAC
CGCCCAAACAGGGCGGGTGCAAAATTTACGCCCAAAACGTTTGTTTCGAA
AATTTTTTTTTGAAAAGAGATTTTTGAACCCCCTCAGAAAAATCCCAGAT
CCGCCTCTGGACTCTACTACTACTACAAATACTCAATAGAAATTCGAAAA
CCCTTCGCGTTCAATTTTGTTTTCCTTTTGTTTCAGGATTCATCAAATTC
GTCGAAAAATTTCCATCTTCGTGTACGAAGGTCGCTTATACAGTCAGATG
CACCTCATCAATTGAGATACCTAGGTATGTGAGCATTTTATTTTTTGTCT
TTGGTACTAACCTACTAAGAAAAGTTTTAAATTATCATAGTCGAGTCGTG
GCCTAATGGAAGATACCAAAAATCTTTTGGGGAAAGCCTGCTTTTTCCAG
GATTGGTCAAGAATTTTAGTGGATTTCGGTTATATTTTTTAAAAGTTTCA
TTTCTTTGCTCTATAATTTGAAAAATGGAAAGTCAAAGTTCAAAAACTCT
TTAAAAATATTTTTTTTCAAGGGTTGATCTAAAGTGACGCCATCTAAATA
AGTCTCTTTTTCCTCCTCTAACCCATTTGGATATTCAGTCTTAATTCAGT
CTAAACCTTTTAATTTAAAAATCTCTTCGTTAAACAAAAGAATCAATATT
GCTCAAAACGTTATCCAGATCCAAATTCATGCACCTTTCCTTTTAACAAT
ATTAACGAAATTGTGCGTTAAAACATCTCATAAGGCGAAGTGGTATGGTT
GTCGTCGCTCTCGGCTCTCGCCTAAGCGTCCCGAGTTCGATTCCCACCGT
GGTACTTCGACTCACTTGGTAAGCGAGTGTACCGTCGTCCGGGTCAACCG
ATAACATGTGAGGAGAATAGAGTACCACAGGGTATCTGTATGTCGCGTAC
ATATGATCAGCAACGAGTAGAGCTTTAAAATTCCTACTCGTAAGTGAGGA
AATGTTGCTCTGAAGGGAGTAGGACCCACCCCGGTAATCTGGTTTAATAT
CTCTATATATCTACATTTCATATCTGATTCAAACATTGTTCAAAACCTCA
ATTATGTCACCAACAACGGGAATGGAAAATGCTCTAACCTTCGATGAAAT
TTGAATATGATTGTTTTCGAGATCTAAGATTGTTTTCGTCGAAGATTTAG
TATTCGTGCATAAATTTATCATTATGATCTATAAGAAGTCAGTTTACTCG
TAGAAAACCACACATTAAATGAGATGGAATGAATTTCAGCTTTAGTTGGT
ATTTTTTCCTTTTACAAAATATAGATGTTAACAAAGTATGAGATCTTATG
CGTTTTTTTTTTTTCAAAATGGTGCTGATGATTTTTTTTCGGTAGGCCTT
TCTCGAGATAGAATTCTTAGAAACGCAAACATGTACCTTTTTTTCTATGT
AACATTGTGATCATATATCTTATCAGAAAAATGAAAAATGTAATTTTGTT
GCTATGCGTAGTTTCAAAGAATGTCGATCTTAATCATCATCTTAATCTCG
TCGAATACTCCCTTACTGGCCCTTGTAAGAACGGAAAATGAAAAATAACC
AAAATCGAAATTCTTGGCCCGAGAAACTTAAAAAGCATTTCCTCTCCTGA
AAAAGCTATATATACAAAAAAGATCCATAACCAACAATTTTGGCACTGGT
ACATTTTAGTGATTTTTTATGGTTTGCATTTTTATCTCGAGAAAGGCCTT
AGTGTCAACTGCTGCCGTTAAAATACAAATACAGTATAGATCTCATCCGG
TCTGATTTTTGGTGGCGCTCGTCTTCGGCATTCGATATGATGGTGGATCT
CCTTTTGGCGTCAATGGGTAGGTTCTCTCTATCCGCCAATCGTTCACGAT
CAGAATTCTTAGCTATCCGGTCCACATCAGTTTTTACTGCCAATATATAT
GAAATTGTATATAGTTTGTATATATAGTTTTGTGTATAGAACCTGACCTG
TGCTGACAAATAAATTAATAAGGTAAAAAGATTAATAATGAAGACCGCGC
CATATTGTCCATCATGGTCTACACAAGACTTTTTCTTTGTAAAAAACTTC
TTCCTGAATGTCAAGTCACTCTGGCTTTCTACTTCGACCTCTAAGTCCAT
CTCCATTTCGAAACACTCATTATTGGATTCGCACTTCCCAACGTGACTCA
CTTTTTCGTCATCGCCATCATTTAAGAACAACACACTTGATAGATCTATT
TCTTCTTCATCCTCCTCCTCTCCGGAAGCGATATTTTCCATTTCAATCAA
TGGATTATTATATGATTCTTCTTCGAGCACTAGTCCATTGCCTTCTTCAA
AATTGGATGGCAATATTTCATGGAACCTTTCATCTCGGTCTCTCTCGAGA
GCATCTTCTCCTTCGATTAATGGTTGATAATTCTCTAAGGCTTGTGTAAG
TAATATATCTCCTTGCCGTATTCGTTCCCTTTGTTCTTGCATCAGTTGGA
TCAAATAATTCCTTTCAGCCATGAGATCTTCCAGCGGCATGGTATTGTAC
TGTTCTAGAACTACATATGTTGGAGTGCACAAACCTTTTTCGTAAAGAGG
CGTGAACTCGTTAACAACGGTCTGCTCATATTCATAAAGATCGCTGTCCT
GGTGATGAGAAGTCATCGCGAACTCGTACTCTATTATCGGTGCCTCCATC
CTAAAAGGAAAAACCGCAATAGAAGTTTTCCCTGTTTTTTAAGTTACGTA
ATTTCCGCCATTATGGAAGAAAACGTTCGAATCACGTAAGAGGTTGCCTC
TACAGGTTCGAACGTTTGCTTCCATAATGGCGGAAATTACGCAAATTAAC
AAAAGATGAAAAAACCTATATATATGAACGGACAGTTGATCTTTTGCTAA
AAACAGATTTTTCTCATCAAAATGATTTTTGTAATGACAGTGAAATTTTA
GCTAGTTTGCAAATTATCATTCAACTGAAAACAGACCTCGCATACCTTGG
ATGGAGAAACTCTTCGAATTCGTCGAAATCGTCAACTATTGATAAACCAG
GATAAACTTGCGCGTTTGTGTGAAACTAACTTCCAAAACAATGTCTAGAT
GCGTATTGAACGCCAATTTAAAAGTATTCGTTTTGTTGAAATTTTTAATT
GACGTCAAAATGAAAAATTTTTTAATTCGACGTCACACTTTTTCAAAAAT
CAAAAAGGCTTTACAAACGTTTCAAAATAAAAAGAAATTGCCTGGTCATC
GTACCTATATAAGACTATTTTACAAAACAACTATAGGTAGATGTGAGTTA
AAAGTCAAATATCTTAAGATATAACCATGTACTCTCAGCTGTCTAATAAA
CGCCCCCTAACGCCCCTTTCTAAAAAGTACACCTTTTAGTCTATAATTAC
CTTATTTCGGAGGTATTTAGTTGTACAATTTCCAACCCCCACAATGATAA
TCAGCCCTCCCCCACCCCTATTAATTAAAAATGGAAGATTTTTCAAACAC
TAGAAACTGTACCTCTAATCGAAAGTACTCTTTGAGATTCATTGCCGAAA
AATATGTTTTCATCTAATTATGTTTGAAAGTCAGTAGGAAATTTAACATT
AGTCGACCAAATTAGACAAACGACCTGATTTTGAAGATCCTCTTTTCAAG
CTTTGAGACGGTAAAATCAGTATTAACCAATAAAGAAGTTTAAAAAATTC
TAAGAGTTTCTAGGCCTAAAAATTTTTTTTCTTTATTGAAACAAAGACAC
GTGTACACTACGAACATATATTACAAAACATTACTTAAACATAAAATAAT
ATAGTTCCTCCCCCCGCTAGGAACTAACGTCGCCATAGGTACTAGACTAT
GTAAAAAATAAATAAATAAGTAAATTCAAAAAAAAATCTTGGAGAAGGAA
GCTACAATTGTTAGGTAAAAGCCTAAAATAAAGCACCACTCAACCTTCCA
GTTTCGTTAAGAAATTCAACAACAGAACAAAGAATGGATTTATTTAGATT
TGAAGTCAAACTTTCATCCCATATAATAAAAGCCGACAGAAAAAAGGAGG
GTTAAGTGGATGAAAAACAATGCCTAGGGTCTGAAGTTTGTCGAACAAAG
ATTGTCTTGCATGGGAATATATAGAGCAGTGCAGAAGAAAGTACCGAGTG
TTTTCAACAGAGTTAGTTCGGCAACCACAGAAAGGGTCTAAAGTGTCGCG
GAAGTCATGTCTAAATCTGTGCTCGTTGAGATGGCTGAAACCGACCCGAA
GTCGATTAAGAAAGATCACTCCTTGAATGTCAGGAACATCAAAAACATGA
GATTGCTTGGGTCTCAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAGTCTTACTGGCAGGTAGTTACGTAAATACGAA
GGGGCTAAATTGTTAATAATTCCATAGAAGAATGTCATTCTTCTAGCAAA
GCGCCTGTCAGCAAGACCTTCAAGACCAAGTTCTGAATATAGTTTTTCTT
GAGACGTTCCACGAAAACAGCCTGTTATAGCTAGACAGGCATTATATTGA
ATAGATTCAAGCTTCTGCACAAAGGTATCATTTCCTGGGCGGTCATATAC
GATATCACCTTAATCTAGGCCTAAATGACCTTACTTTCTTCATTCAATGT
TTAATAGCATTGAATCGCCAGCTTGGCAACTGATTTTGAAGTACCATGGG
ACCAAATAGTGAGAAAATAAAACAAAAACCTATATATTTTACTTATTAGG
GTCAACCAAGACCGCCCCGGACCATTGGTACCTGAGAGTTATAGACTTGT
TTTAACCCCTTAAAGATTGACAAGAAATTTTGGCCTGTCTAGTTAGTACT
TTCCAGACCAGAATGTAAATTTGACCGTAGTCATGTATTGACTGATTGAC
TCGTTCTATTTGACTGAAATTCATTCCTGAAGGCTGATTTGTCAAATGAA
AGAGACTAGTAACAGAACAAATCCGTTTCTATAAGTATTTGGTACTTTGC
AGACCGGTCTTTAAAATACACGTTGACCACCTGCTGGAACTCGGGAACTA
CTGGAGCGTTGACGTGAAATCCCCCCAAGATGCTCGAAGGGTTAACTTAA
AAGTTCAGCTAAACAGTTTCTTTGGCCGACACTGGATTGCTTGTTGATTT
AATTTCATTTGTATTTTTCAGGTACATCTGAGACTGGTGATAAAAGCCGT
GCAGCATCTATGAGAAGTTGCATCGAAGTCGATTGTACCGAAAACATACG
AGCATTTCTTGAACATATTGGTTTTCAATTCGATCATGAGACTATACTAC
GCGGTTATTTATTCAAAAAAGGTCGCATGAAAATTTGCGTTTCAAGGCTA
CACAAGATTCCGGAGAAAGGTGTTTTTCAGAATGCTATGCAAATGACTGA
TTCTTATTTAGTTGAAGTGACTTTGAATACATTAGTTCAACAAGACTCTT
TATGTGAAGATATGAAGGCTTTCGCTGAGTACCTGAAACCCATTGTTGTT
TTAGATAAACTTGACCAGAAACGTCTATAAACTGGTATTGTGGGTATTTC
ATGCATTTTTAATAGAGGTTGTTCATGTTTGGTTAAGTTACATAAGTTCC
ACCATTATTGAAGCAAACGTTCGAATATGTAGAGACGATCCATTACGCAA
AATCGAACGTTTGCTTCCAAAACAACGGAAATGGTGTAACGTAACAAAAC
ATGAAAAATTTCTATAGATAAGTCATTTCATTGACACATTAATAGGGTTG
TATGCCTTTTGATTGCGAAGAAGAAAATGATATGAAAATGCTGCTAAGAG
ATACTGGTTTTCTTAACGGTCGAGTCAACTATCAGGATAAATAAACATTA
GTATTGCAATGGTGCGATGAAATGGCCGAAAGGTCTGGATAAAGACATAA
TAGTTTGAAATGATTTTGAAATATTTTGTAATCAAGCAGTACAAGAACTA
GCCCAGAAGCCTGGCAATGAAAAATAGT

Coding sequence (CDS) from alignment at scaffold_367:147928..159805-

>TCONS_00062514 ID=TCONS_00062514|Name=TCONS_00062514|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_367:147928..159805- (Clytia hemisphaerica)
GTACATCTGAGACTGGTGATAAAAGCCGTGCAGCATCTATGAGAAGTTGC
ATCGAAGTCGATTGTACCGAAAACATACGAGCATTTCTTGAACATATTGG
TTTTCAATTCGATCATGAGACTATACTACGCGGTTATTTATTCAAAAAAG
GTCGCATGAAAATTTGCGTTTCAAGGCTACACAAGATTCCGGAGAAAGGT
GTTTTTCAGAATGCTATGCAAATGACTGATTCTTATTTAGTTGAAGTGAC
TTTGAATACATTAGTTCAACAAGACTCTTTATGTGAAGATATGAAGGCTT
TCGCTGAGTACCTGAAACCCATTGTTGTTTTAGATAAACTTGACCAGAAA
CGTCTATAAGATTCATCAAATTCGTCGAAAAATTTCCATCTTCGTGTACG
AAGGTCGCTTATACAGTCAGATGCACCTCATCAATTGAGATACCTAGATG
AATCAAATAAAAGGTCGAAATCAAATTCAATACATATTGGTCGGAAGTGT
ACCAACAGGCAATTTGAAGTTTTTGTTACATCGATTAAGAGGTTTATGTG
AAGAAGCAGCCCTGCAGGACAAATACTTTGAAGACCATGAATCTGTGTAT
GTTATGAAGGTACATCTGAGACTGGTGATAAAAGCCGTGCAGCATCTATG
AGAAGTTGCATCGAAGTCGATTGTACCGAAAACATACGAGCATTTCTTGA
ACATATTGGTTTTCAATTCGATCATGAGACTATACTACGCGGTTATTTAT
TCAAAAAAGGTCGCATGAAAATTTGCGTTTCAAGGCTACACAAGATTCCG
GAGAAAGGTGTTTTTCAGAATGCTATGCAAATGACTGATTCTTATTTAGT
TGAAGTGACTTTGAATACATTAGTTCAACAAGACTCTTTATGTGAAGATA
TGAAGGCTTTCGCTGAGTACCTGAAACCCATTGTTGTTTTAGATAAACTT
GACCAGAAACGTCTATAAGATTCATCAAATTCGTCGAAAAATTTCCATCT
TCGTGTACGAAGGTCGCTTATACAGTCAGATGCACCTCATCAATTGAGAT
ACCTAGATGAATCAAATAAAAGGTCGAAATCAAATTCAATACATATTGGT
CGGAAGTGTACCAACAGGCAATTTGAAGTTTTTGTTACATCGATTAAGAG
GTTTATGTGAAGAAGCAGCCCTGCAGGACAAATACTTTGAAGACCATGAA
TCTGTGTATGTTATGAAGGTACATCTGAGACTGGTGATAAAAGCCGTGCA
GCATCTATGAGAAGTTGCATCGAAGTCGATTGTACCGAAAACATACGAGC
ATTTCTTGAACATATTGGTTTTCAATTCGATCATGAGACTATACTACGCG
GTTATTTATTCAAAAAAGGTCGCATGAAAATTTGCGTTTCAAGGCTACAC
AAGATTCCGGAGAAAGGTGTTTTTCAGAATGCTATGCAAATGACTGATTC
TTATTTAGTTGAAGTGACTTTGAATACATTAGTTCAACAAGACTCTTTAT
GTGAAGATATGAAGGCTTTCGCTGAGTACCTGAAACCCATTGTTGTTTTA
GATAAACTTGACCAGAAACGTCTATAAGATTCATCAAATTCGTCGAAAAA
TTTCCATCTTCGTGTACGAAGGTCGCTTATACAGTCAGATGCACCTCATC
AATTGAGATACCTAGATGAATCAAATAAAAGGTCGAAATCAAATTCAATA
CATATTGGTCGGAAGTGTACCAACAGGCAATTTGAAGTTTTTGTTACATC
GATTAAGAGGTTTATGTGAAGAAGCAGCCCTGCAGGACAAATACTTTGAA
GACCATGAATCTGTGTATGTTATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039174XLOC_039174Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062514-proteinTCONS_00062514-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062514-exon-scaffold_367-1575043694:159628..159805TCONS_00062514-exon-scaffold_367-1575043694:159628..159805Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1575043694:154032..154119TCONS_00062514-exon-scaffold_367-1575043694:154032..154119Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1575043694:147928..148734TCONS_00062514-exon-scaffold_367-1575043694:147928..148734Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1510915933:159628..159805TCONS_00062514-exon-scaffold_367-1510915933:159628..159805Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1510915933:154032..154119TCONS_00062514-exon-scaffold_367-1510915933:154032..154119Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1510915933:147928..148734TCONS_00062514-exon-scaffold_367-1510915933:147928..148734Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1491911889:159628..159805TCONS_00062514-exon-scaffold_367-1491911889:159628..159805Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1491911889:154032..154119TCONS_00062514-exon-scaffold_367-1491911889:154032..154119Clytia hemisphaericaexon
TCONS_00062514-exon-scaffold_367-1491911889:147928..148734TCONS_00062514-exon-scaffold_367-1491911889:147928..148734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_367supercontigscaffold_367:147928..159805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.562	23.4601	10.2659	7.55771	12.4422	7.74372	11.7303	12.587	18.2084	15.4149	31.534	20.4421	26.5115	29.4335	24.5076	21.8859	20.1182	27.466	24.7514	19.6502	25.8828	22.1628	39.9465	37.9855	17.0847	22.9758	14.7147	15.1489	17.6404	20.8053
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019095Mediator_Med18_met/fun
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
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BLAST of TCONS_00062514 vs. Swiss-Prot (Human)
Match: MED18 (Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.196e-48
Identity = 86/195 (44.10%), Postives = 130/195 (66.67%), Query Frame = 2 
Query:   38 NQIQYILVGSVPTGNLKFLLHRLRGLCEEAALQDKYFEDHESVYVMKDSSNSSKNFHLRVRRSLIQSDAPHQLRYLGTSETGDKSRAASMRSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQKRL 622
            N ++Y+L GSV   +L+ L+HRLRGLC+   ++ + F DHE V+++K    S   F LR RRS+ ++ AP  LRYLG  E GDK+R A +R+C+++  +EN+  FL  +GF+ DHE + +G+LF+KG MKI V ++ +I   G   +   ++ SYLVE+++     QD + +DMK FAE LKP+V L+K+D KRL
Sbjct:   17 NMMEYLLQGSVLDHSLESLIHRLRGLCDN--MEPETFLDHEMVFLLKGQQASP--FVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
The following BLAST results are available for this feature:
BLAST of TCONS_00062514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED181.196e-4844.10Mediator of RNA polymerase II transcription subuni... [more]
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