TCONS_00063315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063315
Unique NameTCONS_00063315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063315 ID=TCONS_00063315|Name=TCONS_00063315|organism=Clytia hemisphaerica|type=transcript|length=3375bp
GTTTCTTATGTTGCTGAATTTTGAACTGTTTCGATGAGgtcgaaattttt
ttctaaagtctaCTCTTATTTGAGACACCGTCTAACCAAAAGAAATAAGG
AAGATTTTGCATTCATTTATCCAATTCTTCTAATCTCACTGACATATGAA
AccttcaaatttcataaagaatgaCAATTAACCAATTAATGATACTGTAG
ATCAAGTAAAGAATTCGAAAGGAAAGAAATTTCCCAGAAATTATTACAAC
TGAATAagaaaaagattaaatttgatgatgttatattttctttcaaactt
tgaaaataaaaatagaatatAATGAATGAGTTCTTTACTTTCatatttac
aaatatttttacacAAACCATTATTAACTTTTCAAAACTGTATACCAATT
TACATTGTATGTTTATTATTTATGATCATGCCATCTTTGTGTTTGAAGAT
TAGACTCTATATATAATGAAGTTTTGTTAAATAAGTCCGATTTTATAAAA
CTGTTAAGACCCTCTCGTCAGGGACTGcacttgattttatttttccacTA
CTTTTTCTCATACGCGATGCTTTCTTTTGAAGTTGAAGTTTGTCAGTGAA
AAATGTCTTTTTCCAACCAATTTTATTACCCAGTTGTTTGATATCTTCAT
TCATGTTGCTGCAGTAGTGATTAATATAAATGTTTCTCCATAGTTCATTA
CTTTGACAAACAATACGAAAATGACGGCAAACTTGAGATAGTGACATGAC
GTCGCTGAGTTCAAGACCACTAAAAATCTTGATCAATATGTTATCTTTCA
TTCTGTAAAGCCAATCTTTATGAACGATGCACTGGACATAAATAAGCACT
TGCTCTCCTAAAATTCTTTTGATATCGTTAGGTACTACAGTGTCATAGAA
GAAGTCTTCGTAACTTTGCTTGTTTTGAGAAGGTGGTATCCCCATTTGCT
CTTTCCTCAAAGATACTCTCCATGTTCTCCAAATCACATTTCCCTCAGTG
ACAATAAGTTGGTGGAAATCTTTTGAAGGAGAAGGTGCTTGTCCCGTCCT
TTCAAATATTATAGTCTCTCTACCTTTTATCATGGAAGGCATTTTTCAGC
AGTTTCTTTGTGTTTGATGTTTCCTTGCATCCACTGCTCGCTCCAATCAA
CCAAACCTTGTCTACACAAAACAAGACGTGATTTCTCACATGAAAAGACG
CGAAAAAGACTAATCAATCAATCGCGCGATCAAAAGCTACCATTTTGGAT
TTcgaatgaaatcaaaacaaaattccgTGACGTAGGTAACATCTCACATA
ATGCCCTGTCTACATGTAGGAGtgaattcttttttataaaCCTGAGTGCT
AAAAAGGTTTGAGAGGTTTTGAAAATCGTTTTCTATTTATCTTATTTGac
agaaaatgcaaaaattgataaagtttaaattaaaaaataaatagataCGT
TTTTAAGGAATATGAGGGACAATGTATACCAACCTTTAGGaaaggttttt
cttttgttcGAGGATTACTTATCCTTGGTTTAACTTCCTAACTTGAAGTC
CAACAATTCCCCAACTTGTAGCAATGAGGTGTGGTTGTCCTCTATCACGG
GCATCgacaagaaaaattttctttcaagctgACGCCTCTCAAATTTGGCT
GGAGGAAGACGAGCAAAATCTGATAATGGTCATGTGATTGACTTTCTATC
ACGAGGTACATACCAACTTCGAATCAAAATAATCCATCCATCCCATGTGA
TGTAAACTGAGGTAATTCTCAAGAAAAGTGggaattctttaaaatttgaa
caTCGCGAATGACAACCTTATTTGAGGAAGCTGACAACACCGACCCTCCG
TCACCCTCTGAACTCCTGGATGCCCCCTCTATCAAGTCAGAGTTGGTTGG
CCAAAGAAAGGCATCTAATGGTGCCAGTCAGTCAGATGATGGGATAAATT
CAGgaGGCTCACCAGCGGGGGCCAGTCAAGAAGGCACTACTAGTGATTCC
TTTACCACCTTTGTTGGAGACGGGAACTCAATATCAAATAATGTGCGAGT
GGTACATGTACAAGCTGTCGATGACAACCCAAATCCCAATAGCAGTGGCT
CTGTGAATAGTTCTAATTCAGGTGGACTTTATGCAGTAGGAGGTGGTGGA
CAAATTCAACAAGTGATATCACCTGGTGACTCTGCCATTGGTTCAGTGGG
AGTTGACAGTGCATCACAAGATGGGGCTCGTTACACTTATTACCCTGCTG
TCCAAACCAATGAAAATAATCAAGGAGGGCAATTCTACGTTATGATGTCA
CCACAAGAAGTAATTCCAGTCACTGGAGGGAACAGTGCACCAAGAATTAT
TGCTCCTCGTGCTCAGACACTTTCAACGAAATCTGAATCTAGTCGTTCCA
CAAGAGATGAAAGACGACGAGCCACACACAATGAAGttGAGAGACGTCGA
CGCGATAAGATTAATACTTGGATAATGAAGATTGCTGCAGTTGTACCTGA
TTGTCAGATGGACCAATCAAAGCAAGGCACCAGCAAAGGTGGTGTCCTGT
CTAAGGCATTAGACCACATTGTCAAATTACGCCAAGAAAATGACAGGATG
CGTGAAAATATGAAAGAACAGGAACGTGTACTGGTTGAAAATCAAGTCTT
GAGACAGCAAGTTGAGAAACTGAGGCAAGAGAACTCTATACTTCAAGCTA
ATTTGAATTTGCACATGAGGCAAGGAGAACAGATGGAGGATGATGGGAAA
TTGGACGAGGATTGATGAAGTAAATgtacgaaaaatgttttgttataatt
ttGCAGGAAAATAAAGcctttcatttttgtatttatttgtaTTAGTGATG
GTTGGTTGGTACGTATTTTTGACATAATAAATCAATTAATACAGCTTTCA
ATTAGTTTTTTATGGAATGGTTCATTATCCTGATATCTATTCAAAGTGTT
GGGTATCTATGGCTAATTTGTTTGCCTATAAGATGTTTCTGTATAGAAGG
GGCAACTGTTGAGGAATTTGTCGAGTCAGgagaaatttgttttataaaag
CAACTTATATTATAGCACTTTGAATAGAtgccttgttttttttttcattt
ttaaatacaACCAGTCACTTTTTTTGTATATACCTTTAGAATATTATCAC
TTTGCTTTAGGGAatgtatattttattttttaatattattcTTACAACtt
agacattttttttttagaaatttttgtttctacTGTTTTGAAGTAGCCGA
GAAAATGTAATGATGTAAGAATgacgttttttatttgaccaaAAAATGCG
TTACTGTttgtttcatttgaaaattttcaaaatattgaagattATGAATC
GAACCTGATTTTGAACCTTTTAACG
Run BLAST on NCBI

protein sequence of USF

>TCONS_00063315-protein ID=TCONS_00063315-protein|Name=USF|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MTTLFEEADNTDPPSPSELLDAPSIKSELVGQRKASNGASQSDDGINSGG
SPAGASQEGTTSDSFTTFVGDGNSISNNVRVVHVQAVDDNPNPNSSGSVN
SSNSGGLYAVGGGGQIQQVISPGDSAIGSVGVDSASQDGARYTYYPAVQT
NENNQGGQFYVMMSPQEVIPVTGGNSAPRIIAPRAQTLSTKSESSRSTRD
ERRRATHNEVERRRRDKINTWIMKIAAVVPDCQMDQSKQGTSKGGVLSKA
LDHIVKLRQENDRMRENMKEQERVLVENQVLRQQVEKLRQENSILQANLN
LHMRQGEQMEDDGKLDED
Run BLAST on NCBI

transcript from alignment at scaffold_385:547263..557753-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063315 ID=TCONS_00063315|Name=TCONS_00063315|organism=Clytia hemisphaerica|type=transcript|length=10491bp|location=Sequence derived from alignment at scaffold_385:547263..557753- (Clytia hemisphaerica)
GTTTCTTATGTTGCTGAATTTTGAACTGTTTCGATGAGGTCGAAATTTTT
TTCTAAAGTCTACTCTTATTTGAGACACCGTCTAACCAAAAGAAATAAGG
AAGATTTTGCATTCATTTATCCAATTCTTCTAATCTCACTGACATATGAA
ACCTTCAAATTTCATAAAGAATGACAATTAACCAATTAATGATACTGTAG
ATCAAGTAAAGAATTCGAAAGGAAAGAAATTTCCCAGAAATTATTACAAC
TGAATAAGAAAAAGATTAAATTTGATGATGTTATATTTTCTTTCAAACTT
TGAAAATAAAAATAGAATATAATGAATGAGTTCTTTACTTTCATATTTAC
AAATATTTTTACACAAACCATTATTAACTTTTCAAAACTGTATACCAATT
TACATTGTATGTTTATTATTTATGATCATGCCATCTTTGTGTTTGAAGAT
TAGACTCTATATATAATGAAGTTTTGTTAAATAAGTCCGATTTTATAAAA
CTGTTAAGACCCTCTCGTCAGGGACTGCACTTGATTTTATTTTTCCACTA
CTTTTTCTCATACGCGATGCTTTCTTTTGAAGTTGAAGTTTGTCAGTGAA
AAATGTCTTTTTCCAACCAATTTTATTACCCAGTTGTTTGATATCTTCAT
TCATGTTGCTGCAGTAGTGATTAATATAAATGTTTCTCCATAGTTCATTA
CTTTGACAAACAATACGAAAATGACGGCAAACTTGAGATAGTGACATGAC
GTCGCTGAGTTCAAGACCACTAAAAATCTTGATCAATATGTTATCTTTCA
TTCTGTAAAGCCAATCTTTATGAACGATGCACTGGACATAAATAAGCACT
TGCTCTCCTAAAATTCTTTTGATATCGTTAGGTACTACAGTGTCATAGAA
GAAGTCTTCGTAACTTTGCTTGTTTTGAGAAGGTGGTATCCCCATTTGCT
CTTTCCTCAAAGATACTCTCCATGTTCTCCAAATCACATTTCCCTCAGTG
ACAATAAGTTGGTGGAAATCTTTTGAAGGAGAAGGTGCTTGTCCCGTCCT
TTCAAATATTATAGTCTCTCTACCTTTTATCATGGAAGGCATTTTTCAGC
AGTTTCTTTGTGTTTGATGTTTCCTTGCATCCACTGCTCGCTCCAATCAA
CCAAACCTTGTCTACACAAAACAAGACGTGATTTCTCACATGAAAAGACG
CGAAAAAGACTAATCAATCAATCGCGCGATCAAAAGCTACCATTTTGGAT
TTCGAATGAAATCAAAACAAAATTCCGTGACGTAGGTAACATCTCACATA
ATGCCCTGTCTACATGTAGGAGTGAATTCTTTTTTATAAACCTGAGTGCT
AAAAAGGTTTGAGAGGTTTTGAAAATCGTTTTCTATTTATCTTATTTGAC
AGAAAATGCAAAAATTGATAAAGTTTAAATTAAAAAATAAATAGATACGT
TTTTAAGGAATATGAGGGACAATGTATACCAACCTTTAGGAAAGGTTTTT
CTTTTGTTCGAGGATTACTTATCCTTGGTTTAACTTCCTAACTTGAAGTC
CAACAATTCCCCAACTTGTAGCAATGAGGTGTGGTTGTCCTCTATCACGG
GCATCGACAAGAAAAATTTTCTTTCAAGCTGACGCCTCTCAAATTTGGCT
GGAGGAAGACGAGCAAAATCTGATAATGGTCATGTGATTGACTTTCTATC
ACGAGGTACATACCAACTTCGAATCAAAATAATCCATCCATCCCATGTGA
TGTAAACTGAGGTAATTCTCAAGAAAAGTGGGAATTCTTTAAAATTTGAA
CATCGCGAATGACAACCTTATTTGAGGAAGCTGACAACACCGACCCTCCG
TCACCCTCTGAACTCCTGGATGCCCCCTCTATCAAGTCAGAGTTGGTTGG
CCAAAGAAAGGCATCTAATGGTGCCAGTCAGTCAGATGATGGGATAAATT
CAGGTATATTATTTTACTAGACGCTTGTTAAGATGATTACTACTTGCAAC
AAAATGACACATTGTTTCCAAAAAATGACTGTTAAAACTGTTGTCTTTTG
ATTCATTTACTCTAGTAACTATAAATTTTGGGGCATATTATCCCTCTAGG
TGCCGTGGTATAGTGGTAGTCGACCTTGGCTTCTGTGCAGGGGCCAGGGT
TCGATTCCCACTCACGGCAGTTCACTTGGCAAGTGAACATTCCTTCGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATGTGAGGGGAA
TTGGGTAGTCAGTTCAAGGTGCTGACGGGACGCTCATTAGTAAGCGTCTA
TAGTTGCGAAAATAGGCCTCTAAAGCCTCCTGCAGCTCAACCAAATAGAA
ATACATCTAAAGTTCTGACGCCCTTTTTTAGAGCTTATAAAATGATAGAA
AGGTCTCTAGAAGATAAATGCTTTTTCAATCATGATTCCAAATTTGATAT
CTTTTCTGTCTCCAAAAAAGGATAGTGTTGCTTTTCAATCAGTAGTACAG
TACTGTCCAGACGTTACTAATACACCTTTCCCGTAATTCTTAAAACTTAT
GCTCGCGCATTATGATGCTCTCCACCGTTAGGGCTCTGGAGATAAACAAA
CCCGTTTTTGCCTGCGTTTCCGGGTTAGAGAAAGTTGGTTTTTTGAGCTT
TTCTTAAGTTCTGTCGAACAAAATCCCCTCAAATTTTAGTATGTTCAATC
TATTCATAATATTATACCACCCTGAAATTTTTTTGCTAAAAGAAGATCGC
TATCAAAAGTTAGAAGCTGAAAATCCATTTTCCCTAACCCCTCGCAGGCA
AAAACGCGTTCGTCTACCTCCCAAACAATTTTATACACAGCTGTGCAGAG
CTGTGAAGTGCACATTTTCCCGGGCCATTTCTGAGAAGTCTGAAGTTTAA
AATCAATAGCTAATCAATAATCAATCGATTGATTAAATATCCATTAAAAA
TGATAAGGTCAGGGTTAGAGCTTGAAACAAGCTTTTTTTTAATCTTCTCT
TTATATGTTTTAGTCTGTGGTTTGTACAATATAAATGGCAGNACTGTTGG
TGATACAAATGTTGCTAGTCGAAGGAAGCGACGATTTTGCAGTGTCACCC
TCCCTGAGCCATTGGTTCTAACTCTGTATTGTCTGTTAGGGAGTGTTTCT
ACAATCATCCCAGAGCGAATCCATCGGCGTTGATGCTTCGTACTACGGTT
TTGGATGACGACAGTGATTCCAACGGATAGGGACGGTAATGTTTTGGCGT
GTCTGTTGTNGTATAGTGTCATAGTTACCAAGTATCCCACATCCTGCGGG
ACACGTACGCCAAGCGACCTTTTGTCCCGCTTTACGCCTGCATCCTTTCT
ATGTCCCGTATTTTCAAAAATTCATTAGAATTATGCTGAAAGTCAGGCTA
AATACAACCAATAACATGTGAAAAATGATTGATTAATGATAAAAAAAGTA
AAATATTATATATATATGTNNNTCTCACTGATGACATGGTTTCGTTTGGA
GAATGCTTCTTCCCGTTGTCTTGCGTCTATCACCCATGATGAGTGAAGCT
GATAGTGGGATGGGTGTGTGGGTATTTGGTCACGCAGCTGGCGGTGAAAT
AGGATTTGGGCAGGACTGAGCTTGAGATCTGGTAGAGGAGTATTTCTGTA
TTGTAAGATTGCTTGAGAAACCTTGTTGTTGTCGATTGTGCCATTTGGTG
ATACGTTATCGAGTAGAATTCTTTTTGCAGCTTTCACCCCTATTTCTGCT
CTGCCTTTAGACTGGGGGTACTCTGCTGATGATAGACGGTGTTTGACTCC
CCAATCTGATAAGAATTGTTGGAACTTGTTTGCAGTTAACTGAGGTCCTC
CATCTGAACTGAATTCTTCTGGAACGCCGTAGTTAGTGAAGAGGGTGCGA
CAAGTGGATATCAGGGCGGCACTGGTGGCTTCATTGGGTCCGAAATGATA
CAGGCAGTTCCAGCCGCTATATTTATCAATGATCGTCAGATAGTGGTGAC
TTGCAATAATGAAATAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTGCAGCCGAGGACGAACATCTTGGCG
TGATCAAGTGACCAGGCAACGGCAAGTGCTTCTCCTTCTGTTGGGCTGTA
TCGGCTCTCGGAGTCAGATGTGAATGTTGAGCCTGCATAGATGAGCTTTC
ATCCGTCTGGACAGCATACAGGTGCATTCTTTGTATCACATTTACAATGC
TGTTGTAGTAGTAAATACTGTAGCAGGGCAGGACCGCTAGGGATGTTTGT
AACACGTGATTGTTGTGATATGGAATATTGAAGTGTGAAGTGTGAAGTGT
TCAAACTGAAATGAATACAAAGAAAATAATTTAGAAAAATTGACAATTTG
ACTAAATAAATGAAAACTAGGAATGATGATGCTAATTAGTGAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAT
TTGGTGTGATTCTAAGTCCGGCAAAATCAACTGTGTCTTGACAAAATTGA
AACTTTTCAGCATTGAGGACGATTCCTTTCTCCCCACAAAGTTGAGGGTA
ATCCCATGCATGGTAGAAGGATTCCGTGATTGACATGTCGTATAACAGAG
TATCATCCACACATTTCACCTTTTGTTGTACATCTTTAATAATGTCATCA
TAACGACTGGTGTAGGCATCACCAGATGTTATAAAACCCTGGGGCATACG
GAGATATCTGTATCATCCCCATTTAGTTATAAAAGTCGTGAGATGTTGGC
TCTCTTCATCAATTGGTACAGAATGATATCCGTCAACTGCATCCAAGACA
GTCTTCTTGGTATTGGGAGGTACTTGACATGCGAGTTGGAACGGGGAGGG
ACAATGGTGAGTTTCGCGTTAACACTGTATGTTGAGTTGTTGGAGGTCAA
CTGTCCGACTAATATCGCCGTTTTTCTTTCTGGCTGTGACCATGGTGGTG
CACCACTCGACTGGTGTTCCGATCGGTACAGGTGCTATAATGCCTCTCTT
GACGTTGTTGTCCAGACTCTTCTTGACTGCTTCCTTAAGGTGGAAGGGCA
CTGGGATGGGGTTATGACAAACATGCGGCTTCGCATTAGGTTGAATATGG
ATGTGGGCAGGTTTTGTATCCATGGACGGAAATGGTCAGTCTCTGTTGAA
CATAGTTTTGGAAAATTGTTCTAATAGGTAATGTTTGAATTTTGGAACAT
TTTCCTCTGTAGGTTCAAATGGTAATTTTTCTGAACGTTTAGGTAGATTA
CTTGGAAAGGGTGTCAACGGAGGAAACGGTTGCTGATATGGGATATGGAA
ATGTCTCTGGTAGAATGTTCAATTCTGTACACCCTGCCTTTACGGCTGGC
GTAAATTCTGTCAACTTTTTCACAAATGTATAGCGGTTGAGTAGTAGTGT
GATTGTCTATTGTGAAAGTCATTGGTAGCCAGCCAGAACAATGTAATGTG
GATCCGTCAAGTTTCATTTCAAGAAGATCTATATTATGTTAGATTGATTA
TTAATTTTCTTTTAATTATTTTTTCAGGAGGCTCACCAGCGGGGGCCAGT
CAAGAAGGCACTACTAGTGATTCCTTTACCACCTTTGTTGGAGACGGGAA
CTCAATATCAAATAATGTGCGAGTGGTACATGTACAAGCTGTCGATGACA
ACCCAAATCCCAATAGCAGTGGCTCTGTGAATAGTTCTAATTCAGGTGAG
TCGAGTCAAATTATATGACGAGTATACTAGACATGTGCTAATTTTGAGTT
AGAAATTGTAATTTTTGGTCGAACTCGTTGGAATTAGATTGGGTTTCATG
GTCAAGCAAAAAGAAAATCAAAATTGAGTCTTTCCAACAAGATTTTAAGC
CAAAAAGTCGAAAAATGCAAAAATTTGACAAAAATCCACTTTTTTAAGAT
TTTGACCGTTTTTTCACCATTTTTGGTCAACGAGTCATCCAAGAACCTCC
AAAATTGGCCGACCTTACTTGATTCTGTCCTCTAGCGAATTAATTTGAAG
TTTTGCTACTGGACACCTTTCTATCATTCGGGCAGGTCCGCGCAGCGGGC
GACGCCAANGCTACTGGACAGCTTTCTATCATTCGGGCAGGTCCGCGCAG
CGGGCGACGCCAAATGCGCCTAAAAGAAAGAAGAGACTCGAAGCTATCCA
ACGAACTATAAACGAGCTTCTAACTCCTTCTAGATCCGGAGATATAAGCC
TTTAAAGTTTGAACCAGCAATTTTCTTTAAAAAACTTAGAAAAAAATGAC
CGTGGTACTTAAAGGGTTAATGGCATTAGGACATATTTTTCCTCAAAAAA
TATTACGGACTGCACGTCACTTCCAAAAATTGAAACAAAAAATAAGATTC
ATCATATTATCATTGCTTCATTGTAATTACTTCTATCTTTTCCATATTCT
AGGTGGACTTTATGCAGTAGGAGGTGGTGGACAAATTCAACAAGTGATAT
CACCTGGTGACTCTGCCATTGGTTCAGTGGGAGTTGACAGTGCATCACAA
GATGGGGCTCGTTACACTTATTACCCTGCTGTCCAAACCAATGAAAATAA
TCAAGGAGGTAGTGTTTAGTTTATTATTTTTTATCATTTGCAAAATTATG
CTCCCTCAATTCAAACAAACAAAGTTTACTGCATTTGTCACTTTGAAACT
TCCCCTGCTACCCTTAAACTACATTATCTTTTCTTTGAAAAAAAATATCT
AGATTCATTTTTTGTAGTTTCAATGTTTTTTTTTAGAGAGTGATCATTGG
TCACCAAATCACCTGATTGTCCAGTTGATTTCGTTTATTCTCATGCTCTC
TTATTTGATGTTTTTTTTCAGGGCAATTCTACGTTATGATGTCACCACAA
GAAGTAATTCCAGTCACTGGAGGGAACAGTGCACCAAGAATTATTGCTCC
TCGTGCTCAGACACTTTCAACGTAATTTATATATTTTCTTTATTACAGTT
TTGTCATTTTTAGTTTAATTGCTCTTGCTTCAGTCCCTCTAAGTAAGTCT
GCAACCGCAGTCGGAGGCAACTCGGAGGCTCTTATTTCAAAGGTAGGGGA
GGGTGCCACTCTTTCTCCCTGGATTGCTTCACTTACCCTTGATCCTATCC
TTCCTTCTCTTAGCATCAAGCAGAGAGGCATCAAGTACCGTTTTGAGAAT
CTTTGGTATGACCCAGCTTGGGGTTGAACCCTCAACCTTGCAAACCGTTA
CTAAGTCCCTTTTATAATGTCTTAATTCCGTAATACATTAAAATGAGCCT
AGCCAGCATAGCTCAATCATGAGCCCCATCGTAAAGGAGATAATTTTTTT
TTCTCAATATAATCAACTGATATATCCTTCTTTGGAATTTTAGGAAATCT
GAATCTAGTCGTTCCACAAGAGATGAAAGACGACGAGCCACACACAATGA
AGGTAATCTTATATTTCCCTTCACCAGTGAGCCAAACTTAACGTTCCTTT
TTTGCCAGCAATAAAAATAGCAATATGATTACATATATAGATTTTTTCTA
AGCATTCAACTGTGCATTAAGTGAAACCCCTCCCTTACTGAGGTATATAT
TTTGTCTTACTATTTTGATTTAACTAGGCTATCTAGGAGGTTCGAGAAAT
AAAATTCGAGGCTTAAAAAAATTATTTTTCATAACTTTTTATTTCATTTT
AGTTGAGAGACGTCGACGCGATAAGATTAATACTTGGATAATGAAGATTG
CTGCAGTTGTACCTGATTGTCAGATGGACCAATCAAAGCAAGGCACCAGC
AAAGGTGGTGTCCTGTCTAAGGCATTAGACCACATTGTCAAATTACGCCA
AGAAAATGACAGGATGCGTGAAAATATGAAAGAACAGGAACGTGTACTGG
TTGAAAATCAAGTCTTGAGACAGCAAGTTGAGAAACTGAGGCAAGAGAAC
TCTATACTTCAAGCTAATTTGAATTTGCACATGAGGCAAGGAGAACAGAT
GGAGGATGATGGGAAATTGGACGAGGATTGATGAAGTAAATGTACGAAAA
ATGTTTTGTTATAATTTTGCAGGAAAATAAAGCCTTTCATTTTTGTATTT
ATTTGTATTAGTGATGGTTGGTTGGTACGTATTTTTGACATAATAAATCA
ATTAATACAGCTTTCAATTAGTTTTTTATGGAATGGTTCATTATCCTGAT
ATCTATTCAAAGTGTTGGGTATCTATGGCTAATTTGTTTGCCTATAAGAT
GTTTCTGTATAGAAGGGGCAACTGTTGAGGAATTTGTCGAGTCAGGAGAA
ATTTGTTTTATAAAAGCAACTTATATTATAGCACTTTGAATAGATGCCTT
GTTTTTTTTTTCATTTTTAAATACAACCAGTCACTTTTTTTGTATATACC
TTTAGAATATTATCACTTTGCTTTAGGGAATGTATATTTTATTTTTTAAT
ATTATTCTTACAACTTAGACATTTTTTTTTTAGAAATTTTTGTTTCTACT
GTTTTGAAGTAGCCGAGAAAATGTAATGATGTAAGAATGACGTTTTTTAT
TTGACCAAAAAATGCGTTACTGTTTGTTTCATTTGAAAATTTTCAAAATA
TTGAAGATTATGAATCGAACCTGATTTTGAACCTTTTAACG

Coding sequence (CDS) from alignment at scaffold_385:547263..557753-

>TCONS_00063315 ID=TCONS_00063315|Name=TCONS_00063315|organism=Clytia hemisphaerica|type=CDS|length=5742bp|location=Sequence derived from alignment at scaffold_385:547263..557753- (Clytia hemisphaerica)
TTGAGAGACGTCGACGCGATAAGATTAATACTTGGATAATGAAGATTGCT
GCAGTTGTACCTGATTGTCAGATGGACCAATCAAAGCAAGGCACCAGCAA
AGGTGGTGTCCTGTCTAAGGCATTAGACCACATTGTCAAATTACGCCAAG
AAAATGACAGGATGCGTGAAAATATGAAAGAACAGGAACGTGTACTGGTT
GAAAATCAAGTCTTGAGACAGCAAGTTGAGAAACTGAGGCAAGAGAACTC
TATACTTCAAGCTAATTTGAATTTGCACATGAGGCAAGGAGAACAGATGG
AGGATGATGGGAAATTGGACGAGGATTGAGAAATCTGAATCTAGTCGTTC
CACAAGAGATGAAAGACGACGAGCCACACACAATGAAGGGCAATTCTACG
TTATGATGTCACCACAAGAAGTAATTCCAGTCACTGGAGGGAACAGTGCA
CCAAGAATTATTGCTCCTCGTGCTCAGACACTTTCAACGTGGACTTTATG
CAGTAGGAGGTGGTGGACAAATTCAACAAGTGATATCACCTGGTGACTCT
GCCATTGGTTCAGTGGGAGTTGACAGTGCATCACAAGATGGGGCTCGTTA
CACTTATTACCCTGCTGTCCAAACCAATGAAAATAATCAAGGAGGAGGCT
CACCAGCGGGGGCCAGTCAAGAAGGCACTACTAGTGATTCCTTTACCACC
TTTGTTGGAGACGGGAACTCAATATCAAATAATGTGCGAGTGGTACATGT
ACAAGCTGTCGATGACAACCCAAATCCCAATAGCAGTGGCTCTGTGAATA
GTTCTAATTCAGATGACAACCTTATTTGAGGAAGCTGACAACACCGACCC
TCCGTCACCCTCTGAACTCCTGGATGCCCCCTCTATCAAGTCAGAGTTGG
TTGGCCAAAGAAAGGCATCTAATGGTGCCAGTCAGTCAGATGATGGGATA
AATTCAGTTGAGAGACGTCGACGCGATAAGATTAATACTTGGATAATGAA
GATTGCTGCAGTTGTACCTGATTGTCAGATGGACCAATCAAAGCAAGGCA
CCAGCAAAGGTGGTGTCCTGTCTAAGGCATTAGACCACATTGTCAAATTA
CGCCAAGAAAATGACAGGATGCGTGAAAATATGAAAGAACAGGAACGTGT
ACTGGTTGAAAATCAAGTCTTGAGACAGCAAGTTGAGAAACTGAGGCAAG
AGAACTCTATACTTCAAGCTAATTTGAATTTGCACATGAGGCAAGGAGAA
CAGATGGAGGATGATGGGAAATTGGACGAGGATTGAGAAATCTGAATCTA
GTCGTTCCACAAGAGATGAAAGACGACGAGCCACACACAATGAAGGGCAA
TTCTACGTTATGATGTCACCACAAGAAGTAATTCCAGTCACTGGAGGGAA
CAGTGCACCAAGAATTATTGCTCCTCGTGCTCAGACACTTTCAACGTGGA
CTTTATGCAGTAGGAGGTGGTGGACAAATTCAACAAGTGATATCACCTGG
TGACTCTGCCATTGGTTCAGTGGGAGTTGACAGTGCATCACAAGATGGGG
CTCGTTACACTTATTACCCTGCTGTCCAAACCAATGAAAATAATCAAGGA
GGAGGCTCACCAGCGGGGGCCAGTCAAGAAGGCACTACTAGTGATTCCTT
TACCACCTTTGTTGGAGACGGGAACTCAATATCAAATAATGTGCGAGTGG
TACATGTACAAGCTGTCGATGACAACCCAAATCCCAATAGCAGTGGCTCT
GTGAATAGTTCTAATTCAGATGACAACCTTATTTGAGGAAGCTGACAACA
CCGACCCTCCGTCACCCTCTGAACTCCTGGATGCCCCCTCTATCAAGTCA
GAGTTGGTTGGCCAAAGAAAGGCATCTAATGGTGCCAGTCAGTCAGATGA
TGGGATAAATTCAGTTGAGAGACGTCGACGCGATAAGATTAATACTTGGA
TAATGAAGATTGCTGCAGTTGTACCTGATTGTCAGATGGACCAATCAAAG
CAAGGCACCAGCAAAGGTGGTGTCCTGTCTAAGGCATTAGACCACATTGT
CAAATTACGCCAAGAAAATGACAGGATGCGTGAAAATATGAAAGAACAGG
AACGTGTACTGGTTGAAAATCAAGTCTTGAGACAGCAAGTTGAGAAACTG
AGGCAAGAGAACTCTATACTTCAAGCTAATTTGAATTTGCACATGAGGCA
AGGAGAACAGATGGAGGATGATGGGAAATTGGACGAGGATTGAGAAATCT
GAATCTAGTCGTTCCACAAGAGATGAAAGACGACGAGCCACACACAATGA
AGGGCAATTCTACGTTATGATGTCACCACAAGAAGTAATTCCAGTCACTG
GAGGGAACAGTGCACCAAGAATTATTGCTCCTCGTGCTCAGACACTTTCA
ACGTGGACTTTATGCAGTAGGAGGTGGTGGACAAATTCAACAAGTGATAT
CACCTGGTGACTCTGCCATTGGTTCAGTGGGAGTTGACAGTGCATCACAA
GATGGGGCTCGTTACACTTATTACCCTGCTGTCCAAACCAATGAAAATAA
TCAAGGAGGAGGCTCACCAGCGGGGGCCAGTCAAGAAGGCACTACTAGTG
ATTCCTTTACCACCTTTGTTGGAGACGGGAACTCAATATCAAATAATGTG
CGAGTGGTACATGTACAAGCTGTCGATGACAACCCAAATCCCAATAGCAG
TGGCTCTGTGAATAGTTCTAATTCAGATGACAACCTTATTTGAGGAAGCT
GACAACACCGACCCTCCGTCACCCTCTGAACTCCTGGATGCCCCCTCTAT
CAAGTCAGAGTTGGTTGGCCAAAGAAAGGCATCTAATGGTGCCAGTCAGT
CAGATGATGGGATAAATTCAGTTGAGAGACGTCGACGCGATAAGATTAAT
ACTTGGATAATGAAGATTGCTGCAGTTGTACCTGATTGTCAGATGGACCA
ATCAAAGCAAGGCACCAGCAAAGGTGGTGTCCTGTCTAAGGCATTAGACC
ACATTGTCAAATTACGCCAAGAAAATGACAGGATGCGTGAAAATATGAAA
GAACAGGAACGTGTACTGGTTGAAAATCAAGTCTTGAGACAGCAAGTTGA
GAAACTGAGGCAAGAGAACTCTATACTTCAAGCTAATTTGAATTTGCACA
TGAGGCAAGGAGAACAGATGGAGGATGATGGGAAATTGGACGAGGATTGA
GAAATCTGAATCTAGTCGTTCCACAAGAGATGAAAGACGACGAGCCACAC
ACAATGAAGGGCAATTCTACGTTATGATGTCACCACAAGAAGTAATTCCA
GTCACTGGAGGGAACAGTGCACCAAGAATTATTGCTCCTCGTGCTCAGAC
ACTTTCAACGTGGACTTTATGCAGTAGGAGGTGGTGGACAAATTCAACAA
GTGATATCACCTGGTGACTCTGCCATTGGTTCAGTGGGAGTTGACAGTGC
ATCACAAGATGGGGCTCGTTACACTTATTACCCTGCTGTCCAAACCAATG
AAAATAATCAAGGAGGAGGCTCACCAGCGGGGGCCAGTCAAGAAGGCACT
ACTAGTGATTCCTTTACCACCTTTGTTGGAGACGGGAACTCAATATCAAA
TAATGTGCGAGTGGTACATGTACAAGCTGTCGATGACAACCCAAATCCCA
ATAGCAGTGGCTCTGTGAATAGTTCTAATTCAGATGACAACCTTATTTGA
GGAAGCTGACAACACCGACCCTCCGTCACCCTCTGAACTCCTGGATGCCC
CCTCTATCAAGTCAGAGTTGGTTGGCCAAAGAAAGGCATCTAATGGTGCC
AGTCAGTCAGATGATGGGATAAATTCAGTTGAGAGACGTCGACGCGATAA
GATTAATACTTGGATAATGAAGATTGCTGCAGTTGTACCTGATTGTCAGA
TGGACCAATCAAAGCAAGGCACCAGCAAAGGTGGTGTCCTGTCTAAGGCA
TTAGACCACATTGTCAAATTACGCCAAGAAAATGACAGGATGCGTGAAAA
TATGAAAGAACAGGAACGTGTACTGGTTGAAAATCAAGTCTTGAGACAGC
AAGTTGAGAAACTGAGGCAAGAGAACTCTATACTTCAAGCTAATTTGAAT
TTGCACATGAGGCAAGGAGAACAGATGGAGGATGATGGGAAATTGGACGA
GGATTGAGAAATCTGAATCTAGTCGTTCCACAAGAGATGAAAGACGACGA
GCCACACACAATGAAGGGCAATTCTACGTTATGATGTCACCACAAGAAGT
AATTCCAGTCACTGGAGGGAACAGTGCACCAAGAATTATTGCTCCTCGTG
CTCAGACACTTTCAACGTGGACTTTATGCAGTAGGAGGTGGTGGACAAAT
TCAACAAGTGATATCACCTGGTGACTCTGCCATTGGTTCAGTGGGAGTTG
ACAGTGCATCACAAGATGGGGCTCGTTACACTTATTACCCTGCTGTCCAA
ACCAATGAAAATAATCAAGGAGGAGGCTCACCAGCGGGGGCCAGTCAAGA
AGGCACTACTAGTGATTCCTTTACCACCTTTGTTGGAGACGGGAACTCAA
TATCAAATAATGTGCGAGTGGTACATGTACAAGCTGTCGATGACAACCCA
AATCCCAATAGCAGTGGCTCTGTGAATAGTTCTAATTCAGATGACAACCT
TATTTGAGGAAGCTGACAACACCGACCCTCCGTCACCCTCTGAACTCCTG
GATGCCCCCTCTATCAAGTCAGAGTTGGTTGGCCAAAGAAAGGCATCTAA
TGGTGCCAGTCAGTCAGATGATGGGATAAATTCAGTTGAGAGACGTCGAC
GCGATAAGATTAATACTTGGATAATGAAGATTGCTGCAGTTGTACCTGAT
TGTCAGATGGACCAATCAAAGCAAGGCACCAGCAAAGGTGGTGTCCTGTC
TAAGGCATTAGACCACATTGTCAAATTACGCCAAGAAAATGACAGGATGC
GTGAAAATATGAAAGAACAGGAACGTGTACTGGTTGAAAATCAAGTCTTG
AGACAGCAAGTTGAGAAACTGAGGCAAGAGAACTCTATACTTCAAGCTAA
TTTGAATTTGCACATGAGGCAAGGAGAACAGATGGAGGATGATGGGAAAT
TGGACGAGGATTGAGAAATCTGAATCTAGTCGTTCCACAAGAGATGAAAG
ACGACGAGCCACACACAATGAAGGGCAATTCTACGTTATGATGTCACCAC
AAGAAGTAATTCCAGTCACTGGAGGGAACAGTGCACCAAGAATTATTGCT
CCTCGTGCTCAGACACTTTCAACGTGGACTTTATGCAGTAGGAGGTGGTG
GACAAATTCAACAAGTGATATCACCTGGTGACTCTGCCATTGGTTCAGTG
GGAGTTGACAGTGCATCACAAGATGGGGCTCGTTACACTTATTACCCTGC
TGTCCAAACCAATGAAAATAATCAAGGAGGAGGCTCACCAGCGGGGGCCA
GTCAAGAAGGCACTACTAGTGATTCCTTTACCACCTTTGTTGGAGACGGG
AACTCAATATCAAATAATGTGCGAGTGGTACATGTACAAGCTGTCGATGA
CAACCCAAATCCCAATAGCAGTGGCTCTGTGAATAGTTCTAATTCAGATG
ACAACCTTATTTGAGGAAGCTGACAACACCGACCCTCCGTCACCCTCTGA
ACTCCTGGATGCCCCCTCTATCAAGTCAGAGTTGGTTGGCCAAAGAAAGG
CATCTAATGGTGCCAGTCAGTCAGATGATGGGATAAATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039668XLOC_039668Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
USFTCONS_00063315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063315-exon-scaffold_385-1575043694:555801..557753TCONS_00063315-exon-scaffold_385-1575043694:555801..557753Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1575043694:550159..550326TCONS_00063315-exon-scaffold_385-1575043694:550159..550326Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1575043694:549296..549451TCONS_00063315-exon-scaffold_385-1575043694:549296..549451Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1575043694:548933..549032TCONS_00063315-exon-scaffold_385-1575043694:548933..549032Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1575043694:548452..548510TCONS_00063315-exon-scaffold_385-1575043694:548452..548510Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1575043694:547263..548201TCONS_00063315-exon-scaffold_385-1575043694:547263..548201Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:555801..557753TCONS_00063315-exon-scaffold_385-1510915933:555801..557753Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:550159..550326TCONS_00063315-exon-scaffold_385-1510915933:550159..550326Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:549296..549451TCONS_00063315-exon-scaffold_385-1510915933:549296..549451Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:548933..549032TCONS_00063315-exon-scaffold_385-1510915933:548933..549032Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:548452..548510TCONS_00063315-exon-scaffold_385-1510915933:548452..548510Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1510915933:547263..548201TCONS_00063315-exon-scaffold_385-1510915933:547263..548201Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:555801..557753TCONS_00063315-exon-scaffold_385-1491911889:555801..557753Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:550159..550326TCONS_00063315-exon-scaffold_385-1491911889:550159..550326Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:549296..549451TCONS_00063315-exon-scaffold_385-1491911889:549296..549451Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:548933..549032TCONS_00063315-exon-scaffold_385-1491911889:548933..549032Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:548452..548510TCONS_00063315-exon-scaffold_385-1491911889:548452..548510Clytia hemisphaericaexon
TCONS_00063315-exon-scaffold_385-1491911889:547263..548201TCONS_00063315-exon-scaffold_385-1491911889:547263..548201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:547263..557753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5789	27.7162	97.7345	109.384	130.443	103.127	101.82	103.797	48.7585	59.9113	44.9648	41.092	29.0078	29.6197	30.6827	34.3885	38.1157	37.2566	18.3565	19.3583	25.1901	24.3835	51.7678	41.7598	37.0654	33.8771	29.0714	23.3842	29.7632	34.0243
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
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BLAST of TCONS_00063315 vs. Swiss-Prot (Human)
Match: USF2 (Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.736e-43
Identity = 92/175 (52.57%), Postives = 123/175 (70.29%), Query Frame = 3 
Query: 2226 ARYTYYPA----------VQTNENN--QGGQFYVMMSPQEVIPVTGGNSAPRIIAPRAQTLXXXXXXXXXXXXXXXXATHNEVERRRRDKINTWIMKIAAVVPDCQMDQSKQGTSKGGVLSKALDHIVKLRQENDRMRENMKEQERVLVENQVLRQQVEKLRQENSILQANLNLH 2714
            AR+ Y+PA          VQT + +   GGQFYVMM+PQ+V+  TG     R IAPR    S K + +R+ RDERRRA HNEVERRRRDKIN WI++++ ++PDC  D SK G SKGG+LSKA D+I +LRQ N RM+E  KE ER+ ++N++LRQQ+E+L+ EN++L+A L  H
Sbjct:  165 ARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVL-QTGTQ---RTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQH 335
The following BLAST results are available for this feature:
BLAST of TCONS_00063315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USF25.736e-4352.57Upstream stimulatory factor 2 OS=Homo sapiens GN=U... [more]
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