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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064332 ID=TCONS_00064332|Name=TCONS_00064332|organism=Clytia hemisphaerica|type=transcript|length=601bp
AGCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAGATTAT
CCATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAGATTGT
AAACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaactc
agatGATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAA
AAAGTCAGTATTTTGGTGCTCTTCTAGatATTCAGGAGTATTATGAGGAG
ATTTTGAAAGATGCCCATGAATCACCGGAGCAAGTGGAACGAGAGGCGCA
AGCACTTGCCAACAAATGGAATATCAACTCCTCTGATTGCTGAAACTTGC
GGAAACCATTTCTAAGATCATtactagattttgtaattttttgtaaaaat
caaccagaattacTAATTTTTACTAATGTTGAATCTAGCTACTAATAATC
ATTCAAGTGAGATTCTCTCAATAATGCAGTAATATCTGAGAATGTTATGA
AATAACTTTTTATACACAGAATCTAAATGGATTTTACCTTTTTATTTAAC
ATTCTTTTTTTAagttgtaaatatttttcaatcaataTTTCTAACATATG
C Run BLAST on NCBI protein sequence of TCONS_00064332-protein >TCONS_00064332-protein ID=TCONS_00064332-protein|Name=TCONS_00064332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
ADSSSEAWLLLVRSRLSIYIKKNIIMSLTRKDCKQVLVLLEDYNNKISNS
DDDELKQSFQKIINVLKSQYFGALLDIQEYYEEILKDAHESPEQVEREAQ
ALANKWNINSSDC Run BLAST on NCBI transcript from alignment at scaffold_411:16508..25122+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064332 ID=TCONS_00064332|Name=TCONS_00064332|organism=Clytia hemisphaerica|type=transcript|length=8615bp|location=Sequence derived from alignment at scaffold_411:16508..25122+ (Clytia hemisphaerica)
AGCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAGATTAT
CCATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAGGTATA
TCACTATTCTTTTGTGTCTTCCAATAGTTTTGGATTtgaatatttgaata
aagacatgaaatacaccttttttgGCTTTGTTGTTGGTTTGCCTTTCTGG
GCTTTGTGTTGTGGGTTGGGACGTTATTGTTGGGAGAACGAACAGTATTT
CGAATAACTAGCTAATTACTCCAGCagaatatttttctaataatAACATC
ATACAATTGATTTGTATTTTACATACAACACAGCCTGACAGCTCTGTTTA
ACTTAGATATATACAAGATATATAATATAGAGTCAGTTCGCCAGTGCACG
AACGAGCGTCTTTGAACtcgaaaaaaacaaccaaaaacaaacttctagag
aacttcctttgtgcagcagaatcctcaaactattccttgcaatctctcca
aaaattaaaataaacggagcactagatttttgtaaatatggcTGATCgcg
agagaaaatgttttttataagaaaatttgcgcaagaagagttctgaaaat
gactttcctcttttaaaaaaaaaaaaacttttatcttctatcacacaaaa
tttcattgaaacatgttagCTCATTAATTCAAAACCAATAGatagaaaca
tatcaccagtagttgatataaaaaaggtccaaacaccatattcaaaatga
agacagtgcaacgtcaaaacattcgaaagcgctggcgatctcaattcaaa
aagaagacactacactgccgcgcttttcgatgagcaaaacttgaaaagga
aaacaaaaaaatggacgacaagaaaatatttacaaaaataaacaggttag
taaAACACTAAAGTTCTTATAAAAAAGACGCTTATTTAGTGAAAAAGCGc
gtggttttgaaaagttcaaatacccctgtatcatctcggaagagagttaa
agtattacctgcgagcagagctctaattaattctttcaaaagatcgttTG
CAAACTGGTTCCTCGTTCGCGGACTGGGTTTGAATAGCGCTCCCTTTAAC
gacttattattccaagaagaagctttcaaataaagtgaaaacaaactgaa
agaaggacttcaagcttgtttacgagatggtcaaaaaggatttatgtaaa
aaccaaaagtaagtgagaaaagtgaaaaataagtttACCGTTTGTGCACT
GGGCACCCCCATCTAATTTATCCTAATTTTGTATTGACCAGAGTAATTTT
GTTTATAGTTGTTTTGTAGAACGCGACGCCGACGGCCTAttaaataacaa
attactccacatactttacatcagtgtagacctaacttttcatacaaaaa
ttacgggaaacgcatgtttggactttgtaccctatgctgcacgttgctgc
actcaagcactcaAGTCAAAGTCCCgaaaaggcgggacaaaaatcagttt
tttgaagtttgcaaaaaaacgccacatagaagatctttcaaattcagtat
gtgaatagagcaataaaaaatacaactttttttgcaaaagttctaggaat
gaaaataaagggataatgataattgaatacaatCCATTGATGAACCgtgg
cactatcgtaaagctagaatcgttttgcgtactcttcgctttaagaaaat
gattgacagattgaagtttttcacccgcgcaggagttcgcggagcgttct
cggctcaatcctcggaccacgctaaaaatggtagactgagctgtgataga
tcatttcgatggaagttgttgggatgtttacaaggctcttgacagaaaat
cgtttgtgttattgtcaatgatgacagtgtggttattaattttgttagat
ctgacaaattgatgtttgtaagtgcactttatagtttggattcccattga
agaatcataaaCTGGTTTTcctgttattagatgctgttttagagctttag
agctacactgtaCATTACTTTTTTTCAGCCAATAAGAACGTGATAAATTA
TTTTGTCACTAGGTTGTGGAGTaattaggggtcactcacaaatcgattAA
TTAGGTTAGAAAAACGCTAATTGACGTTAGTGGGTGGATGGGTTAAAGGT
TGTTgacgttttttttcaaatccagAAACATCGATTTTCCATTCCatttt
gtgaacaagtttagaaattatctctgtttcttttttttcaaatataaact
atgcgagccgtagtgaagaaaatcaagatggctgacgaaacagcgATGAA
GGCAGCTTTTCATCGATTTTCAGGGATTTCAGGTGTTTGACGTCATAGAG
TGTAGGTGGGTGggtcagcttttaaaacgtcaatttacgtttttctaacc
taaaatcgatttgtgagtgaccccttaccTTATTACTACACAagtattac
tagtcattttattaacacaaattgaaaagttttgtgttaataaaaacccc
cttaattgaaaccacaatcatggtcaaaatctattgaaaaTTCAACTTAT
TTCCGCTTTTTTTTagatttggagttcgggcgagaaagtcgattttgggc
catctctcaaatttaatcagatatttcaatttggctcgggtttatagGCC
Ttcaggctatattatgagcctttttggaccatttttgaacttttggatcc
tcacatcataaggtcctaagtctttaGTCTtgtgttaaaactctaccctt
ccaacctactttagaacacttacaaatcgattgtggttacaaaacttccc
ggtggatttcccttttttctcaaatattacgaccatgattgcagctgtgg
tgtccttgaaaaagcaaataaaatttgtgttaattttttgcatgttattt
ttaaggccgttgaatacttgcctaatAATATTAGTGTTATAAGGTAGTTA
TTCAATAGGAAATCGAGCTCTCCAAACAAAACAACTATTGCATAGGTTTT
GCATATTCTCCTAGGCAGCGGTCACAAATAAGTTCTGTTTGCATAAAAAG
CGCTACGTAACTGCTTTTTGCGCTGTTGCAATATGCAAAATAATCACATT
GCAGCTGGCGCAGGCTCGCGGGCTCGATAAGTCTTGTCGCCTGAACAAAC
CTATGCTCAGTCAGAGCGCATTTGCAGGATGTATTGAACAACAAGGGAGA
GTTACCTCAATCAAGATTCCAAGACAATTATATAACAGAAAAATTGAAAG
CTTGAAagcttgaaacaaaataaaacgtgcagtaACCAGCTAATCAACCA
CAAAAGTTTGTCATTTAATCCTAAGGGAGTGCTTTGACTTGTTAGGCCTT
GATTACATGCTAAAGGTAGGGTGTAAACTGGAaccatgaaaaaatacttt
ttttggattttcaaaattgtcacaattttttatcaaaatttatcatattg
ttAGACTTCTTGCGCAATTTTTAGGTCCATACGTCAAAAATCCACTGTTT
GCCCCAGGGGTATCTGATTCGCGGTAGTAgtaaaaaacggcaaaaatggc
attttttgtccattttaagactataaaaggccaggaaatggtcaaaatgg
tttctaaatgctgtcttgtactaatattcaacacaaaaagacaaaaaaac
cccagcgagatcgctcaatgtttcaatttcaggctaaaaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGGACCTcaaaattgc
gcaaaaagtcttacaatataataaattttgataaaaaattgtgacaattt
tgaaactctaaaattcaaaatccagTTTACACCCTACTAAAGGAAAAATA
ATTCTACACATGTTAAATGGAATGGGTTAGTGTTTGAGGTCTAGCAAAAT
ATTTCCCGGAAATAGCCTATCTGGTacctaccgtaagttggtctaatatc
gacattccccttctaattttgacacccttttttaaagataggaataatCA
GAATGTTGGGatcgctgatggaaactatttttctttacttagcAATCata
gaagaaaaatattttgtctatatATAAGTGATCcccaaccttcctattat
tcctatctctaaagaaaggTGTCAGAATTGGAAGAgggattagaccaact
tacagtatagTATGCGGATCTAGGTAGGTGTCTTCTCCCCTGTCTTGTac
atctttttcttgggaagatgttcttcaaattagttttgaaaTTAGCTTGG
TTCAAGTTCTTTCAATTATGAGACCCCccagattttttccaaatccatac
attcacgcaatgtttttcgAAAGTTATAGTTATACAATTTCTGCTCACAT
AAAGCCTTCCAATCCATGAATTCAcgcaactttttaaaaatcttaacaAA
TTCACAAGTAATTCTGAGTAATTTGTAATAGTTCTTTaatgttataattt
tatttaaaagcaCCAGTTTATTTGTTCctaaatccctttagaagttttgc
ggggCTATCCTTTTGCTTGCAAGTCAAGTAAACAATAAAGCAGTTTCACA
GCATTAATTTTTGATACGCAATTCTGCGGAaccctagtgtgactaactga
cattATGATAAGAATTAGACACATGGAAATTGATCTACTATCTGGCTATT
TTGTGAGTCATTGCGTAGTGTTTTAATCGCTGGAGTCATAATGGTATTGC
CCCTAGCATAAAGTCTATACCttttttacttttgatataagcaggtcaga
atcactgatagacaaaagatttttcctctgaGTGCTCAGCAAGGAATTAT
AGTTCCTATCAGCAATTCTGACCGCGTTTTATTCCAAACTCTAAgtaggg
tgtcgaaattagatgaGGGGtgttgatattagaccaacttatggtactAA
TGActccaaaaatctaaaaaaaggtAAATAACCTGACAGATGTCTCAGTG
TATGaccttaactttttgaatttttccatttATTAAAGAAATcccagttt
gcagagtgtggCACATTTGCTCGAGATCTCGAGTGCACAACACGGGAAAA
GTCGAGTgcaggtgcaaaatttgaggttttcaggtgcaagtgCAGACGGT
TTTTTAACCCCAAGTGCAGAGTTCCACTATTTTCTTCTCAAGTGCAACTA
ACTTTAGCAATGTTTTGCCTTTGTTGGGCCAATTTCCGAGGAGGTGCACC
TTTTCCGgacgccaaaatttatcaggtgcgCTCTTCCAGTGCAGAACTTG
GTATTTCCGAATTTTTCCTCGAGTGCAGCCTTACCATACTCTGCAAACTA
AATCTAGTTCTGTCTTTACAAAGTGTCATTAGCTACACTTGTCTTTAAAT
ATATACAATACAACCCATTCTTTGTNGACAGATGTCTCAGTGTATGACCt
gaactttttcaatttttccattTATTAAAGAAATCTAGTTCTGCCTTTAC
AAAGTGTCATTAGCTACACTTGTCTTTAAATATATACAATACAACCCATT
CTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGATTGTAAACAAGTA
TTGGTATTACTGGAGGATTacaacaacaaaatttcaaactcagatGATGA
TGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAAAAGTCAGT
ATTTTGGTGCTCTTCTAGGTAAATATGATTCGAATAttcgttttattttg
atttatctAAGACTTTTAATACTTTAGTAAGAAATTACCTTCCATGACAT
TTGCATTTTATATGCAAGTTTTCAGGCAgtaattatatgactgattGAAA
AGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGAGGGAAGTATGATGG
TTtgattccaattttttttggtgTGATGGCTGGTAGGGACAAAATTTGAG
GACATTGTTTGATTTGGGCTATCTTTAATTTTNGACAGATGTCTCAGTGT
ATGACCtgaactttttcaatttttccattTATTAAAGAAATCTAGTTCTG
CCTTTACAAAGTGTCATTAGCTACACTTGTCTTTAAATATATACAATACA
ACCCATTCTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGATTGTAA
ACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaactcag
atGATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAAA
AGTCAGTACTTTGGTGCTCTTCTAGGTAAATATGATTCGAATATTCGTTT
TATTTTGACTTATCTAAGACTTAGTATTAAAAGTAGTAAGAAATTACCTT
CCATGACATTTGCATTTTATATGCAAGTTTTCAGGCAgtaattatatgac
tgattGAAAAGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGAGGGAA
GTATGATGGTTtgattccaattttttttggtgTGATGGCTGGTAGGGACA
AAATTTGAGGACATTGTTTGATTTGGGctatctttaatttttttgtatga
TAAAGGGTAATCCAAAATTACCCTCCAAACCCAAACCTGGTATTACTAAC
TAAAAATCACTTCACCTCAACGTcccattttttaaatctagatATTCAGG
AGTATTATGAGGAGATTTTGAAAGATGCCCATGAATCACCGGAGCAAGTG
GAACGAGAGGCGCAAGCACTTGCCAACAAATGGAATATCAACTCCTCTGA
TTGCTGAAACTTGCGGAAACCATTTCTAAGATCATtactagattttgtaa
ttttttgtaaaaatcaaccagaattacTAATTTTTACTAATGTTGAATCT
AGCTACTAATAATCATTCAAGTGAGATTCTCTCAATAATGCAGTAATATC
TGAGAATGTTATGAAATAACTTTTTATACACAGAATCTAAATGGATTTTA
CCTTTTTATTTAACATTCTTTTTTTAagttgtaaatatttttcaatcaat
aTTTCTAACATATGC Coding sequence (CDS) from alignment at scaffold_411:16508..25122+ >TCONS_00064332 ID=TCONS_00064332|Name=TCONS_00064332|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_411:16508..25122+ (Clytia hemisphaerica)
GCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAGATTATC
CATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAGATTGTA
AACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaactca
gatGATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAA
AAGTCAGTATTTTGGTGCTCTTCTAGatATTCAGGAGTATTATGAGGAGA
TTTTGAAAGATGCCCATGAATCACCGGAGCAAGTGGAACGAGAGGCGCAA
GCACTTGCCAACAAATGGAATATCAACTCCTCTGATTGCTGAGCAGACAG
CAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAGATTATCCATTTACA
TTAAGAAGAATATCATTATGTCACTCACAAGGAAAGATTGTAAACAAGTA
TTGGTATTACTGGAGGATTacaacaacaaaatttcaaactcagatGATGA
TGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAAAAGTCAGT
ATTTTGGTGCTCTTCTAGatATTCAGGAGTATTATGAGGAGATTTTGAAA
GATGCCCATGAATCACCGGAGCAAGTGGAACGAGAGGCGCAAGCACTTGC
CAACAAATGGAATATCAACTCCTCTGATTGCTGAGCAGACAGCAGTAGTG
AGGCTTGGCTTCTCCTCGTCAGATCCAGATTATCCATTTACATTAAGAAG
AATATCATTATGTCACTCACAAGGAAAGATTGTAAACAAGTATTGGTATT
ACTGGAGGATTacaacaacaaaatttcaaactcagatGATGATGAACTGA
AgcaatcatttcaaaaaattattaatgTCTTAAAAAGTCAGTATTTTGGT
GCTCTTCTAGatATTCAGGAGTATTATGAGGAGATTTTGAAAGATGCCCA
TGAATCACCGGAGCAAGTGGAACGAGAGGCGCAAGCACTTGCCAACAAAT
GGAATATCAACTCCTCTGATTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064332-exon-scaffold_411-1491911889:16508..16602 | TCONS_00064332-exon-scaffold_411-1491911889:16508..16602 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1510915933:16508..16602 | TCONS_00064332-exon-scaffold_411-1510915933:16508..16602 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1575043694:16508..16602 | TCONS_00064332-exon-scaffold_411-1575043694:16508..16602 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1491911889:23694..23825 | TCONS_00064332-exon-scaffold_411-1491911889:23694..23825 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1510915933:23694..23825 | TCONS_00064332-exon-scaffold_411-1510915933:23694..23825 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1575043694:23694..23825 | TCONS_00064332-exon-scaffold_411-1575043694:23694..23825 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1491911889:24749..25122 | TCONS_00064332-exon-scaffold_411-1491911889:24749..25122 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1510915933:24749..25122 | TCONS_00064332-exon-scaffold_411-1510915933:24749..25122 | Clytia hemisphaerica | exon |
| TCONS_00064332-exon-scaffold_411-1575043694:24749..25122 | TCONS_00064332-exon-scaffold_411-1575043694:24749..25122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_411 | supercontig | scaffold_411:16508..25122 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
