TCONS_00064513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064513
Unique NameTCONS_00064513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064513 ID=TCONS_00064513|Name=TCONS_00064513|organism=Clytia hemisphaerica|type=transcript|length=1887bp
TTTCAACAGTTACCAGACAAGAGTATTGGCACCCTGGTCAAATATTACTA
CACGTGGAAAAAGAGTAggaataaaaaaagtttgatggaTAAGAGCGAAG
CAAGAGAGTTGGCCATCATTAATGGTATATTTGCTGATGACAGTCCCAAT
GATGATTCCAGTGACAGCGATTATGAGCCGGTTGAGAAGAAATCGCGCTC
CAATAAAAGTACAGATAAGAACACGCTCAACAATCATACAATGAATCATC
CAATcttccaacaacaacaacaacaacaccaaCAACAGTCTTCACACAAC
AACCTGAACAACAAACCAAGTCCAATGCTGTCCACTAATTGCGTCAATTG
TGCTGGTGTAACACCTCAAATGCATTCCACGCCTAGAGGGAAAATGTGTG
TGCCCTGCTACGAGTACTGGAGACGAACAGGTATTATTCGGCCGCACGAC
AAAGACAATCCTATCTCGTTGTACTCCGCTCCTCAGTATAAATCCAAGAA
AAAACCACCCAAGGGAATGTCATTAGGTACGGAGATGTTGATTGACATTG
CACAAAGTCATGGTGATTCACATGTCAGACCTCTAGAGGTGGAACTTATT
AGCTTGAAGCGTCAAATTATGACCGATAAGCAGATCTTACAAGAACAAAC
ACTGGCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTCTCTCTCGCTC
AAAAGTTGAATTCACGCTGGACAAACGAAGAATTATTAATTGCCGTTCAA
TGTGTTCGAAAATATGGTAAAAATTTCGAAGCAATGGCTGAAGTCTTAGG
CAACAAGAATGAATCTCACTGTCGAAGTTTCTTCATCAACCACCGACGTC
GTTTCAACTTGATGGAAGTCCTTGCAGAGTACGAAAAGGAAAACAATATA
CCACGTGATCAAAGCAAACTCAATGATTGGTCAGATGAAATGCCACAAGA
ACCACACGATGCCTATGGagGTATGGCACCCGAAGGAGGTCCTCCGCCGT
TGGTTAGCAACGCTACTTCCGTCACTGTTTCTTCATAATGGTACCGTTAG
CTGTGGTAAATGCTGAGTGCACCACGATCGAGCTTTAACACTTTGAATTC
TATTTTCTCTCAAGTTCTATTTAAGAGTTGAAATAAATGGAATCTTCTGC
ACTATAAAGAGAGACGAAAACttgattattatttttatgGAGGCGGTGAT
TATTTACCAGTAGTTTTTTGTCAGACCAACACCAATTATATCAGGAAACA
CGTGTTTAAACAGACGATTTTGCTTACCGTACATTTCTCTTCTAAATTTT
CGATAAAACAATGAATTTTAGTTGgaaacaaaaattgatgtaTTTTACCA
TCATTCGAATTTTAAAAGCTGCTTTTTGGACGTTTTTAATCAACATATTG
AGtaaatcttttatgtttaaatCATACCTTTTGATCTACTTGCCCAAATT
CGATAGTAGGCCTatcaaaattcaatcttttcTCTCTCCAATTCGAAAAC
GTTtgaatgaatttatttatttattcaaagTGTTAATTTTTTTGTGGTGC
ACTCGAGACATGATATTATCAGTCTTTTTGATGTCAACATTCAATGACTG
CAGTTTCAACTCATCCAAATTTCTCTCGcaaattgaaagaaactttcttg
GGATCGTAGTCTTTCTCCTCTCAAGGAGATGTACTGATATATATACTGGT
GATAAAACCCCAAAATTAATGATTTAGTCCCATATCTACGAGCAGTTTTG
GTTTCGACTGCCTCTGTCACAAATTTTCGGATCAATAGAGACCCGAATAA
CAGTGTTTTTAACCTTTAGTAGTAGTTTGTAGGCCGGTTTGCTTTGTACA
TACTTTATccagtaaaatgtttttttttatttattta
Run BLAST on NCBI

protein sequence of TCONS_00064513-protein

>TCONS_00064513-protein ID=TCONS_00064513-protein|Name=TCONS_00064513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
FQQLPDKSIGTLVKYYYTWKKSRNKKSLMDKSEARELAIINGIFADDSPN
DDSSDSDYEPVEKKSRSNKSTDKNTLNNHTMNHPIFQQQQQQHQQQSSHN
NLNNKPSPMLSTNCVNCAGVTPQMHSTPRGKMCVPCYEYWRRTGIIRPHD
KDNPISLYSAPQYKSKKKPPKGMSLGTEMLIDIAQSHGDSHVRPLEVELI
SLKRQIMTDKQILQEQTLALSGKVEQLRPLSLAQKLNSRWTNEELLIAVQ
CVRKYGKNFEAMAEVLGNKNESHCRSFFINHRRRFNLMEVLAEYEKENNI
PRDQSKLNDWSDEMPQEPHDAYGGMAPEGGPPPLVSNATSVTVSS
Run BLAST on NCBI

transcript from alignment at scaffold_418:208739..213837-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064513 ID=TCONS_00064513|Name=TCONS_00064513|organism=Clytia hemisphaerica|type=transcript|length=5099bp|location=Sequence derived from alignment at scaffold_418:208739..213837- (Clytia hemisphaerica)
TTTCAACAGTTACCAGACAAGAGTATTGGCACCCTGGTCAAATATTACTA
CACGTGGAAAAAGAGTAGGAATAAAAAAAGTTTGATGGATAAGAGCGAAG
CAAGAGAGTTGGCCATCATTAATGGTATATTTGCTGATGACAGTCCCAAT
GATGATTCCAGTGACAGCGATTATGAGCCGGTTGAGAAGGTAATATTGTT
TTTGAACCTCCAGAAAAATAGCATTTTCTGAATCCTCGTCATTAGGTCAA
ATTAGAATTTGGGCAAATTTATAATTTGTGACCCAATTTCTGTGTGTGGT
AAATAGCCAAAGAACTCTTTTTTTTCAATCTTTGAAAAAAGGGGGGGGGG
TTCAGACCCCTTTCCTCACAATGGTGATATTATAAGGACCGTTTCGAAAT
GAATATTATTATCTTTTAATTATGTCACCTCCTATTAAATTTTATGGTTG
GTAAAATAGTTATTCAATTTGATTCTGCTACCGAGAAATATAATGTACTG
GTATAATTATAATGTTTGAAAGGTATACTGCATTTTTCGAACGAATTTAG
TAAAATTTGTTTTATTAAAAACTGGCTCTTTTTTTCCTGTTTTAGAAATC
GCGCTCCAATAAAAGTACAGATAAGGTAATGGAATTTTAAAGAATATCAT
CATGGGGTGACACATGTTGCTTTACTTGATAAGTCTGTCTTAATGCTAGG
TTCTATGTTGGCTCGTATTAAATATTCACCCGATAGTAATTTATTTAATT
ACAAAAAAACACAATTTCATAGAAATGTTATAATTGGAGAATTCAATTTT
CAAATCTAAGCTAGGCTACGTCATATCTTCCTTCGTTTCAAGCGTAAAAC
TCCTACTCTTCGAGTAAGACCTAAAAGACTGGAGCTATCTATTGTGTTGA
CTAATCTAAGCTGGCAATGATAATTAAAAACTAGTAAACAAATAAAACAT
CAAAATAGAAGAAACAAATAAAATGTCTTTTTAATTTCTAGAACACGCTC
AACAATCATACAATGAATCATCCAATCTTCCAACAACAACAACAACAACA
CCAACAACAGTCTTCACACAACAACCTGAACAACAAACCAAGTCCAATGC
TGTCCACTAATTGCGTCAATTGTGCTGGTGTAACACCTCAAATGCATTCC
ACGCCTAGAGGGAAAATGTGTGTGCCCTGCTACGAGTACTGGAGGTAGAG
ATGAGTTTTGAATTTTGTCACACGCGGAGTTAAGATTCCATTTGGGTAAT
TTCAAGATTGTCAACCATGATTTGAGTCTATATCCAATTGAACCCCTTCT
ACGGATGCTTTCAAATGCTGGATAGGTGGCGGCGCTTCTAGGTCTCTACT
GACGGTATCCAGTCAAAAAGGAGCGTGACGTAACCACGTACCCTTCCTCT
GGAACGGCCGTACATCTCTCTACATCTTGTGAAATCCGAGTGAAATCAAC
GGAGCAAGTTTAAATCATTTATCGGAATTGAGTGTCTTGACAAAATTCTC
GTGATAAAATTAGATCAACAAGCCATTTTCCACGCCCTTTTAGCCGCCGC
CCCTTCTTAAAATCACCAAAATATTTAGAAAAGCACCCTTGATAGTTGAA
AGGCACTGGAAAAAGTGCAGATTCTGTTTATATACAGTTGTGGCTTGGAT
AAGACGAAAGAAAGGCTATTTCTATAAGTTATCCTATGAGCTATTCCTAT
GAAAAAATTCACAATACTCCATCATTAGATTGGATCGTTCGTTTTTTTTA
AATCTAGCTTTAATGTTTGTTGTTTCTCTTTTAGACGAACAGGTATTATT
CGGCCGCACGACAAAGACAATCCTATCTCGTTGTACTCCGCTCCTCAGTA
TAAATCCAAGAAAAAACCACCCAAGGTATATGATTTAATGATGATTAAAC
CAGACGTCATAACTTTTACGCAGTAACGTTTATTTCATTCCACTCCAAAC
ATTGGATTTTGTGGCGTCACTTTAAACCTTCCAAGCTCTTGCAGTATAGT
GAAAAAAATCGAATTTGCGTCAGAACACTTTTTTTCAAGAATTTACACTC
TTCAATGAAAGTGTAACAAAGTGTAACTCGTCAAGAAAGGGAATGAAAAA
TCCTGATTTTTGATGAGGTGCCTTTTCAGAAATTTTGAGCGAAGGAAGTT
ATTATTAAAAGTAGATAAAACTTATTATTGCTGATTGCTGGTTTTTCAAT
ACTATACATTCTAAAGAAACACTCAAGTCTTTGGTTGTTCTCCTGAATTT
CATCCAGAAAAATTATTGCATCCCCAAATCAAATCAAATTCAATCAAACT
GTTCAAATTTATATTCAATTTCCCATAAATTATATAAAACTTCAGTTTTG
ATTTAAACTCGAATTTTCAGGGAATGTCATTAGGTACGGAGATGTTGATT
GACATTGCACAAAGTCATGGTGATTCACATGTCAGACCTCTAGAGGTGGA
ACTTATTAGCTTGAAGCGTCAAATTATGACCGATAAGCAGATCTTACAAG
AACAAACACTGGCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTCTCT
GTAAGTATCTGATGATTCAAATTTTTAAGGCTTTTCCTACACGGTTTTTT
ATGTTCACACCCATTCATAAAGTTATCATGAAAGTTATATTACAGGAATT
GTGCTGACAAAGAACTTATTAATTTATTAACTTATTAAGTCTCAGAGTTT
GTGGTTTTTGATTCGTTGCGGCTACACCCAGATAAGATGGAGTTTCCATA
AGATACTTTAGTAATTGGTCATTTTCAGTAATAAGAATGACGTGTTCTTT
ACAAAAAGTAACAAAATTGTTTTATTACTAGTTAACGACCAACCAAATCA
AATGAGAGCTTGTAAAAACTCTATCTCGTCCCGCTACACCTAGCTATTTG
TTGGATGTGCCTCATTGATTAAAGAATCTAAAATACTGTTTGAAATCACT
TTTTAGCTCGCTCAAAAGTTGAATTCACGCTGGACAAACGAAGAATTATT
AATTGCCGTTCAATGTAAGATAAGATCCCTAAATAATGGAATTATTGTGA
TGCACTCCAAGCAGAATGCTTATTAATAAGATTTATTGAAAATTTTATCA
CAATGAGAGGCTCATATTAGCATTCCTTTTATGCAGATGTTTACTAGATG
TCGTAATCTCATAACAGATCCATTCTGAGCATATCACACTCTGCTCTAAA
GGGATATGGGACATATGGCGATCTGACCTGGTTGTTCAGCCAAAGCAATC
AAAACGCGTTGCTTTTTGCTTTAAAACGAAAGCGAAAGCGACTTGGTCTA
ATGTTTATGTATTGTTTATCGTCCCTCACATGACTAAAGGTTCAATCTCA
AAAAAGGCAATCTCAATCTCAAAGATGACCACCACAGTAAAACTCTAAAT
TTCATAAGGTATTAATTTTGAGATTAAACCTTAAGTCATGTGAGGGACGT
TATGTAAATGATTGACCTCTGATTTTGATGCGATTGTTTTCCTTTAGCCA
ATCACCGCGCTCATTTTAAATATTCATCCCAAATCTGGATGAAAAAGATC
AAAGCAGTGCGCAAACCTGAGCAGATTCTCTTACGGAGACATGGCCTTTA
GAGTGAATAGTGGTATCAGAATCTGCTCGGCGATAATAGATGTGGCGGCT
TTTTTCTATGCATAAACATAATATTTTCAGTTATTTAGATATTTCTTATT
TTCGGTTTGTTTATACTATCTACACAGGTGTTCGAAAATATGGTAAAAAT
TTCGAAGCAATGGCTGAAGTCTTAGGCAACAAGAATGAATCTCACTGTCG
AAGTTTCTTCATCAACCACCGACGTCGTTTCAACTTGATGGAAGTCCTTG
CAGAGTACGAAAAGGAAAACAATATACCACGTGATCAAAGCAAACTCAAT
GATTGGTCAGATGAAATGCCACAAGAACCACACGATGCCTATGGAGGTAT
TTTGATATTTTTTTATCTTCACCTGTTTTAGACAACGGATCGGCCTTGTC
CAATATTCTGCAATGCTTTTTAAAATCAGGACCCTAGCAGACAATAGACA
ACACGTCATTAAAAAGGCTTTGTTTCTTTCTTTGTTCCACTTTTAAAATT
CTATTTTCTTAAAGGATAGAGTTTGAGAAGCTTCAATTCAAACAGATTCA
AAAAGTTTTGAACATTCTTTTCTCTTTTGAAGGTATGGCACCCGAAGGAG
GTCCTCCGCCGTTGGTTAGCAACGCTACTTCCGTCACTGTTTCTTCATAA
TGGTACCGTTAGCTGTGGTAAATGCTGAGTGCACCACGATCGAGCTTTAA
CACTTTGAATTCTATTTTCTCTCAAGTTCTATTTAAGAGTTGAAATAAAT
GGAATCTTCTGCACTATAAAGAGAGACGAAAACTTGATTATTATTTTTAT
GGAGGCGGTGATTATTTACCAGTAGTTTTTTGTCAGACCAACACCAATTA
TATCAGGAAACACGTGTTTAAACAGACGATTTTGCTTACCGTACATTTCT
CTTCTAAATTTTCGATAAAACAATGAATTTTAGTTGGAAACAAAAATTGA
TGTATTTTACCATCATTCGAATTTTAAAAGCTGCTTTTTGGACGTTTTTA
ATCAACATATTGAGTAAATCTTTTATGTTTAAATCATACCTTTTGATCTA
CTTGCCCAAATTCGATAGTAGGCCTATCAAAATTCAATCTTTTCTCTCTC
CAATTCGAAAACGTTTGAATGAATTTATTTATTTATTCAAAGTGTTAATT
TTTTTGTGGTGCACTCGAGACATGATATTATCAGTCTTTTTGATGTCAAC
ATTCAATGACTGCAGTTTCAACTCATCCAAATTTCTCTCGCAAATTGAAA
GAAACTTTCTTGGGATCGTAGTCTTTCTCCTCTCAAGGAGATGTACTGAT
ATATATACTGGTGATAAAACCCCAAAATTAATGATTTAGTCCCATATCTA
CGAGCAGTTTTGGTTTCGACTGCCTCTGTCACAAATTTTCGGATCAATAG
AGACCCGAATAACAGTGTTTTTAACCTTTAGTAGTAGTTTGTAGGCCGGT
TTGCTTTGTACATACTTTATCCAGTAAAATGTTTTTTTTTATTTATTTA

Coding sequence (CDS) from alignment at scaffold_418:208739..213837-

>TCONS_00064513 ID=TCONS_00064513|Name=TCONS_00064513|organism=Clytia hemisphaerica|type=CDS|length=8304bp|location=Sequence derived from alignment at scaffold_418:208739..213837- (Clytia hemisphaerica)
GTATGGCACCCGAAGGAGGTCCTCCGCCGTTGGTTAGCAACGCTACTTCC
GTCACTGTTTCTTCATAAGTGTTCGAAAATATGGTAAAAATTTCGAAGCA
ATGGCTGAAGTCTTAGGCAACAAGAATGAATCTCACTGTCGAAGTTTCTT
CATCAACCACCGACGTCGTTTCAACTTGATGGAAGTCCTTGCAGAGTACG
AAAAGGAAAACAATATACCACGTGATCAAAGCAAACTCAATGATTGGTCA
GATGAAATGCCACAAGAACCACACGATGCCTATGGAGCTCGCTCAAAAGT
TGAATTCACGCTGGACAAACGAAGAATTATTAATTGCCGTTCAATGGAAT
GTCATTAGGTACGGAGATGTTGATTGACATTGCACAAAGTCATGGTGATT
CACATGTCAGACCTCTAGAGGTGGAACTTATTAGCTTGAAGCGTCAAATT
ATGACCGATAAGCAGATCTTACAAGAACAAACACTGGCTCTGTCTGGTAA
AGTGGAACAGTTACGACCCCTCTCTACGAACAGGTATTATTCGGCCGCAC
GACAAAGACAATCCTATCTCGTTGTACTCCGCTCCTCAGTATAAATCCAA
GAAAAAACCACCCAAGAACACGCTCAACAATCATACAATGAATCATCCAA
TCTTCCAACAACAACAACAACAACACCAACAACAGTCTTCACACAACAAC
CTGAACAACAAACCAAGTCCAATGCTGTCCACTAATTGCGTCAATTGTGC
TGGTGTAACACCTCAAATGCATTCCACGCCTAGAGGGAAAATGTGTGTGC
CCTGCTACGAGTACTGGAGAAATCGCGCTCCAATAAAAGTACAGATAAGT
TTCAACAGTTACCAGACAAGAGTATTGGCACCCTGGTCAAATATTACTAC
ACGTGGAAAAAGAGTAGGAATAAAAAAAGTTTGATGGATAAGAGCGAAGC
AAGAGAGTTGGCCATCATTAATGGTATATTTGCTGATGACAGTCCCAATG
ATGATTCCAGTGACAGCGATTATGAGCCGGTTGAGAAGGTATGGCACCCG
AAGGAGGTCCTCCGCCGTTGGTTAGCAACGCTACTTCCGTCACTGTTTCT
TCATAAGTGTTCGAAAATATGGTAAAAATTTCGAAGCAATGGCTGAAGTC
TTAGGCAACAAGAATGAATCTCACTGTCGAAGTTTCTTCATCAACCACCG
ACGTCGTTTCAACTTGATGGAAGTCCTTGCAGAGTACGAAAAGGAAAACA
ATATACCACGTGATCAAAGCAAACTCAATGATTGGTCAGATGAAATGCCA
CAAGAACCACACGATGCCTATGGAGCTCGCTCAAAAGTTGAATTCACGCT
GGACAAACGAAGAATTATTAATTGCCGTTCAATGGAATGTCATTAGGTAC
GGAGATGTTGATTGACATTGCACAAAGTCATGGTGATTCACATGTCAGAC
CTCTAGAGGTGGAACTTATTAGCTTGAAGCGTCAAATTATGACCGATAAG
CAGATCTTACAAGAACAAACACTGGCTCTGTCTGGTAAAGTGGAACAGTT
ACGACCCCTCTCTACGAACAGGTATTATTCGGCCGCACGACAAAGACAAT
CCTATCTCGTTGTACTCCGCTCCTCAGTATAAATCCAAGAAAAAACCACC
CAAGAACACGCTCAACAATCATACAATGAATCATCCAATCTTCCAACAAC
AACAACAACAACACCAACAACAGTCTTCACACAACAACCTGAACAACAAA
CCAAGTCCAATGCTGTCCACTAATTGCGTCAATTGTGCTGGTGTAACACC
TCAAATGCATTCCACGCCTAGAGGGAAAATGTGTGTGCCCTGCTACGAGT
ACTGGAGAAATCGCGCTCCAATAAAAGTACAGATAAGTTTCAACAGTTAC
CAGACAAGAGTATTGGCACCCTGGTCAAATATTACTACACGTGGAAAAAG
AGTAGGAATAAAAAAAGTTTGATGGATAAGAGCGAAGCAAGAGAGTTGGC
CATCATTAATGGTATATTTGCTGATGACAGTCCCAATGATGATTCCAGTG
ACAGCGATTATGAGCCGGTTGAGAAGGTATGGCACCCGAAGGAGGTCCTC
CGCCGTTGGTTAGCAACGCTACTTCCGTCACTGTTTCTTCATAAGTGTTC
GAAAATATGGTAAAAATTTCGAAGCAATGGCTGAAGTCTTAGGCAACAAG
AATGAATCTCACTGTCGAAGTTTCTTCATCAACCACCGACGTCGTTTCAA
CTTGATGGAAGTCCTTGCAGAGTACGAAAAGGAAAACAATATACCACGTG
ATCAAAGCAAACTCAATGATTGGTCAGATGAAATGCCACAAGAACCACAC
GATGCCTATGGAGCTCGCTCAAAAGTTGAATTCACGCTGGACAAACGAAG
AATTATTAATTGCCGTTCAATGGAATGTCATTAGGTACGGAGATGTTGAT
TGACATTGCACAAAGTCATGGTGATTCACATGTCAGACCTCTAGAGGTGG
AACTTATTAGCTTGAAGCGTCAAATTATGACCGATAAGCAGATCTTACAA
GAACAAACACTGGCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTCTC
TACGAACAGGTATTATTCGGCCGCACGACAAAGACAATCCTATCTCGTTG
TACTCCGCTCCTCAGTATAAATCCAAGAAAAAACCACCCAAGAACACGCT
CAACAATCATACAATGAATCATCCAATCTTCCAACAACAACAACAACAAC
ACCAACAACAGTCTTCACACAACAACCTGAACAACAAACCAAGTCCAATG
CTGTCCACTAATTGCGTCAATTGTGCTGGTGTAACACCTCAAATGCATTC
CACGCCTAGAGGGAAAATGTGTGTGCCCTGCTACGAGTACTGGAGAAATC
GCGCTCCAATAAAAGTACAGATAAGTTTCAACAGTTACCAGACAAGAGTA
TTGGCACCCTGGTCAAATATTACTACACGTGGAAAAAGAGTAGGAATAAA
AAAAGTTTGATGGATAAGAGCGAAGCAAGAGAGTTGGCCATCATTAATGG
TATATTTGCTGATGACAGTCCCAATGATGATTCCAGTGACAGCGATTATG
AGCCGGTTGAGAAGGTATGGCACCCGAAGGAGGTCCTCCGCCGTTGGTTA
GCAACGCTACTTCCGTCACTGTTTCTTCATAAGTGTTCGAAAATATGGTA
AAAATTTCGAAGCAATGGCTGAAGTCTTAGGCAACAAGAATGAATCTCAC
TGTCGAAGTTTCTTCATCAACCACCGACGTCGTTTCAACTTGATGGAAGT
CCTTGCAGAGTACGAAAAGGAAAACAATATACCACGTGATCAAAGCAAAC
TCAATGATTGGTCAGATGAAATGCCACAAGAACCACACGATGCCTATGGA
GCTCGCTCAAAAGTTGAATTCACGCTGGACAAACGAAGAATTATTAATTG
CCGTTCAATGGAATGTCATTAGGTACGGAGATGTTGATTGACATTGCACA
AAGTCATGGTGATTCACATGTCAGACCTCTAGAGGTGGAACTTATTAGCT
TGAAGCGTCAAATTATGACCGATAAGCAGATCTTACAAGAACAAACACTG
GCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTCTCTACGAACAGGTA
TTATTCGGCCGCACGACAAAGACAATCCTATCTCGTTGTACTCCGCTCCT
CAGTATAAATCCAAGAAAAAACCACCCAAGAACACGCTCAACAATCATAC
AATGAATCATCCAATCTTCCAACAACAACAACAACAACACCAACAACAGT
CTTCACACAACAACCTGAACAACAAACCAAGTCCAATGCTGTCCACTAAT
TGCGTCAATTGTGCTGGTGTAACACCTCAAATGCATTCCACGCCTAGAGG
GAAAATGTGTGTGCCCTGCTACGAGTACTGGAGAAATCGCGCTCCAATAA
AAGTACAGATAAGTTTCAACAGTTACCAGACAAGAGTATTGGCACCCTGG
TCAAATATTACTACACGTGGAAAAAGAGTAGGAATAAAAAAAGTTTGATG
GATAAGAGCGAAGCAAGAGAGTTGGCCATCATTAATGGTATATTTGCTGA
TGACAGTCCCAATGATGATTCCAGTGACAGCGATTATGAGCCGGTTGAGA
AGGTATGGCACCCGAAGGAGGTCCTCCGCCGTTGGTTAGCAACGCTACTT
CCGTCACTGTTTCTTCATAAGTGTTCGAAAATATGGTAAAAATTTCGAAG
CAATGGCTGAAGTCTTAGGCAACAAGAATGAATCTCACTGTCGAAGTTTC
TTCATCAACCACCGACGTCGTTTCAACTTGATGGAAGTCCTTGCAGAGTA
CGAAAAGGAAAACAATATACCACGTGATCAAAGCAAACTCAATGATTGGT
CAGATGAAATGCCACAAGAACCACACGATGCCTATGGAGCTCGCTCAAAA
GTTGAATTCACGCTGGACAAACGAAGAATTATTAATTGCCGTTCAATGGA
ATGTCATTAGGTACGGAGATGTTGATTGACATTGCACAAAGTCATGGTGA
TTCACATGTCAGACCTCTAGAGGTGGAACTTATTAGCTTGAAGCGTCAAA
TTATGACCGATAAGCAGATCTTACAAGAACAAACACTGGCTCTGTCTGGT
AAAGTGGAACAGTTACGACCCCTCTCTACGAACAGGTATTATTCGGCCGC
ACGACAAAGACAATCCTATCTCGTTGTACTCCGCTCCTCAGTATAAATCC
AAGAAAAAACCACCCAAGAACACGCTCAACAATCATACAATGAATCATCC
AATCTTCCAACAACAACAACAACAACACCAACAACAGTCTTCACACAACA
ACCTGAACAACAAACCAAGTCCAATGCTGTCCACTAATTGCGTCAATTGT
GCTGGTGTAACACCTCAAATGCATTCCACGCCTAGAGGGAAAATGTGTGT
GCCCTGCTACGAGTACTGGAGAAATCGCGCTCCAATAAAAGTACAGATAA
GTTTCAACAGTTACCAGACAAGAGTATTGGCACCCTGGTCAAATATTACT
ACACGTGGAAAAAGAGTAGGAATAAAAAAAGTTTGATGGATAAGAGCGAA
GCAAGAGAGTTGGCCATCATTAATGGTATATTTGCTGATGACAGTCCCAA
TGATGATTCCAGTGACAGCGATTATGAGCCGGTTGAGAAGGTATGGCACC
CGAAGGAGGTCCTCCGCCGTTGGTTAGCAACGCTACTTCCGTCACTGTTT
CTTCATAAGTGTTCGAAAATATGGTAAAAATTTCGAAGCAATGGCTGAAG
TCTTAGGCAACAAGAATGAATCTCACTGTCGAAGTTTCTTCATCAACCAC
CGACGTCGTTTCAACTTGATGGAAGTCCTTGCAGAGTACGAAAAGGAAAA
CAATATACCACGTGATCAAAGCAAACTCAATGATTGGTCAGATGAAATGC
CACAAGAACCACACGATGCCTATGGAGCTCGCTCAAAAGTTGAATTCACG
CTGGACAAACGAAGAATTATTAATTGCCGTTCAATGGAATGTCATTAGGT
ACGGAGATGTTGATTGACATTGCACAAAGTCATGGTGATTCACATGTCAG
ACCTCTAGAGGTGGAACTTATTAGCTTGAAGCGTCAAATTATGACCGATA
AGCAGATCTTACAAGAACAAACACTGGCTCTGTCTGGTAAAGTGGAACAG
TTACGACCCCTCTCTACGAACAGGTATTATTCGGCCGCACGACAAAGACA
ATCCTATCTCGTTGTACTCCGCTCCTCAGTATAAATCCAAGAAAAAACCA
CCCAAGAACACGCTCAACAATCATACAATGAATCATCCAATCTTCCAACA
ACAACAACAACAACACCAACAACAGTCTTCACACAACAACCTGAACAACA
AACCAAGTCCAATGCTGTCCACTAATTGCGTCAATTGTGCTGGTGTAACA
CCTCAAATGCATTCCACGCCTAGAGGGAAAATGTGTGTGCCCTGCTACGA
GTACTGGAGAAATCGCGCTCCAATAAAAGTACAGATAAGTTTCAACAGTT
ACCAGACAAGAGTATTGGCACCCTGGTCAAATATTACTACACGTGGAAAA
AGAGTAGGAATAAAAAAAGTTTGATGGATAAGAGCGAAGCAAGAGAGTTG
GCCATCATTAATGGTATATTTGCTGATGACAGTCCCAATGATGATTCCAG
TGACAGCGATTATGAGCCGGTTGAGAAGGTATGGCACCCGAAGGAGGTCC
TCCGCCGTTGGTTAGCAACGCTACTTCCGTCACTGTTTCTTCATAAGTGT
TCGAAAATATGGTAAAAATTTCGAAGCAATGGCTGAAGTCTTAGGCAACA
AGAATGAATCTCACTGTCGAAGTTTCTTCATCAACCACCGACGTCGTTTC
AACTTGATGGAAGTCCTTGCAGAGTACGAAAAGGAAAACAATATACCACG
TGATCAAAGCAAACTCAATGATTGGTCAGATGAAATGCCACAAGAACCAC
ACGATGCCTATGGAGCTCGCTCAAAAGTTGAATTCACGCTGGACAAACGA
AGAATTATTAATTGCCGTTCAATGGAATGTCATTAGGTACGGAGATGTTG
ATTGACATTGCACAAAGTCATGGTGATTCACATGTCAGACCTCTAGAGGT
GGAACTTATTAGCTTGAAGCGTCAAATTATGACCGATAAGCAGATCTTAC
AAGAACAAACACTGGCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTC
TCTACGAACAGGTATTATTCGGCCGCACGACAAAGACAATCCTATCTCGT
TGTACTCCGCTCCTCAGTATAAATCCAAGAAAAAACCACCCAAGAACACG
CTCAACAATCATACAATGAATCATCCAATCTTCCAACAACAACAACAACA
ACACCAACAACAGTCTTCACACAACAACCTGAACAACAAACCAAGTCCAA
TGCTGTCCACTAATTGCGTCAATTGTGCTGGTGTAACACCTCAAATGCAT
TCCACGCCTAGAGGGAAAATGTGTGTGCCCTGCTACGAGTACTGGAGAAA
TCGCGCTCCAATAAAAGTACAGATAAGTTTCAACAGTTACCAGACAAGAG
TATTGGCACCCTGGTCAAATATTACTACACGTGGAAAAAGAGTAGGAATA
AAAAAAGTTTGATGGATAAGAGCGAAGCAAGAGAGTTGGCCATCATTAAT
GGTATATTTGCTGATGACAGTCCCAATGATGATTCCAGTGACAGCGATTA
TGAGCCGGTTGAGAAGGTATGGCACCCGAAGGAGGTCCTCCGCCGTTGGT
TAGCAACGCTACTTCCGTCACTGTTTCTTCATAAGTGTTCGAAAATATGG
TAAAAATTTCGAAGCAATGGCTGAAGTCTTAGGCAACAAGAATGAATCTC
ACTGTCGAAGTTTCTTCATCAACCACCGACGTCGTTTCAACTTGATGGAA
GTCCTTGCAGAGTACGAAAAGGAAAACAATATACCACGTGATCAAAGCAA
ACTCAATGATTGGTCAGATGAAATGCCACAAGAACCACACGATGCCTATG
GAGCTCGCTCAAAAGTTGAATTCACGCTGGACAAACGAAGAATTATTAAT
TGCCGTTCAATGGAATGTCATTAGGTACGGAGATGTTGATTGACATTGCA
CAAAGTCATGGTGATTCACATGTCAGACCTCTAGAGGTGGAACTTATTAG
CTTGAAGCGTCAAATTATGACCGATAAGCAGATCTTACAAGAACAAACAC
TGGCTCTGTCTGGTAAAGTGGAACAGTTACGACCCCTCTCTACGAACAGG
TATTATTCGGCCGCACGACAAAGACAATCCTATCTCGTTGTACTCCGCTC
CTCAGTATAAATCCAAGAAAAAACCACCCAAGAACACGCTCAACAATCAT
ACAATGAATCATCCAATCTTCCAACAACAACAACAACAACACCAACAACA
GTCTTCACACAACAACCTGAACAACAAACCAAGTCCAATGCTGTCCACTA
ATTGCGTCAATTGTGCTGGTGTAACACCTCAAATGCATTCCACGCCTAGA
GGGAAAATGTGTGTGCCCTGCTACGAGTACTGGAGAAATCGCGCTCCAAT
AAAAGTACAGATAAGTTTCAACAGTTACCAGACAAGAGTATTGGCACCCT
GGTCAAATATTACTACACGTGGAAAAAGAGTAGGAATAAAAAAAGTTTGA
TGGATAAGAGCGAAGCAAGAGAGTTGGCCATCATTAATGGTATATTTGCT
GATGACAGTCCCAATGATGATTCCAGTGACAGCGATTATGAGCCGGTTGA
GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040460XLOC_040460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064513-exon-scaffold_418-1575043694:213649..213837TCONS_00064513-exon-scaffold_418-1575043694:213649..213837Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:213213..213242TCONS_00064513-exon-scaffold_418-1575043694:213213..213242Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:212644..212846TCONS_00064513-exon-scaffold_418-1575043694:212644..212846Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:211963..212053TCONS_00064513-exon-scaffold_418-1575043694:211963..212053Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:211288..211467TCONS_00064513-exon-scaffold_418-1575043694:211288..211467Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:210824..210881TCONS_00064513-exon-scaffold_418-1575043694:210824..210881Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:209892..210110TCONS_00064513-exon-scaffold_418-1575043694:209892..210110Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1575043694:208739..209655TCONS_00064513-exon-scaffold_418-1575043694:208739..209655Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:213649..213837TCONS_00064513-exon-scaffold_418-1510915933:213649..213837Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:213213..213242TCONS_00064513-exon-scaffold_418-1510915933:213213..213242Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:212644..212846TCONS_00064513-exon-scaffold_418-1510915933:212644..212846Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:211963..212053TCONS_00064513-exon-scaffold_418-1510915933:211963..212053Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:211288..211467TCONS_00064513-exon-scaffold_418-1510915933:211288..211467Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:210824..210881TCONS_00064513-exon-scaffold_418-1510915933:210824..210881Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:209892..210110TCONS_00064513-exon-scaffold_418-1510915933:209892..210110Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1510915933:208739..209655TCONS_00064513-exon-scaffold_418-1510915933:208739..209655Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:213649..213837TCONS_00064513-exon-scaffold_418-1491911889:213649..213837Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:213213..213242TCONS_00064513-exon-scaffold_418-1491911889:213213..213242Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:212644..212846TCONS_00064513-exon-scaffold_418-1491911889:212644..212846Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:211963..212053TCONS_00064513-exon-scaffold_418-1491911889:211963..212053Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:211288..211467TCONS_00064513-exon-scaffold_418-1491911889:211288..211467Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:210824..210881TCONS_00064513-exon-scaffold_418-1491911889:210824..210881Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:209892..210110TCONS_00064513-exon-scaffold_418-1491911889:209892..210110Clytia hemisphaericaexon
TCONS_00064513-exon-scaffold_418-1491911889:208739..209655TCONS_00064513-exon-scaffold_418-1491911889:208739..209655Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064513-proteinTCONS_00064513-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:208739..213837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.51829	4.84514	3.37541	3.77072	38.121	33.8188	31.6948	33.9984	22.0571	22.7971	19.6212	16.0946	11.7694	13.6976	12.5099	12.9869	20.9667	17.3419	8.09112	10.5364	11.5702	9.0636	17.5755	18.2487	18.5233	16.4506	8.40741	7.05433	12.6487	14.5128
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR013088Znf_NHR/GATA
IPR017884SANT_dom
IPR009057Homeobox-like
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00064513 vs. Swiss-Prot (Human)
Match: RCOR3 (REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.585e-33
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  490 KSKKKPPKGMSLGTEMLIDIAQS--HGDSHVRPLEVELISLKRQIMTDKQILQEQTLALSGKVEQLRPLSLAQKLNSRWTNEELLIAVQCVRKYGKNFEAMAEVLGNKNESHCRSFFINHRRRFNLMEVLAEYEKE 891
            +SK +PPKGM L  E ++ ++ S    ++ +R L++ELISLKRQ+   KQ+       + G +E+ +P    QK+N+RWT EE L+AVQ VRKYGK+F+A+A+V+GNK     ++FF+N+RRRFNL EVL E+E E
Sbjct:  212 RSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAE 347
The following BLAST results are available for this feature:
BLAST of TCONS_00064513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCOR34.585e-3347.79REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 S... [more]
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